org.colomoto.biolqm.io.sbml

Class SBMLqualHelper

java.lang.Object

org.colomoto.biolqm.io.sbml.SBMLqualHelper

public class SBMLqualHelper
extends Object

Helper to create new SBML documents from scratch or from files using JSBML. It will create a bundle with a convenient access to the document, its enclosed model and the qualitative part of the model.

Author:

Aurelien Naldi

Constructor Summary

Constructors

Constructor and Description
SBMLqualHelper()

Method Summary

Modifier and Type	Method and Description
static SBMLQualBundle	loadFile(File f)
static SBMLQualBundle	newBundle() Create a new Bundle, with an empty qualitative model
static SBMLQualBundle	newBundle(boolean addLayout)
static org.sbml.jsbml.SBMLDocument	parseFile(File f)
static SBMLQualBundle	parseInputStream(InputStream in)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SBMLqualHelper

public SBMLqualHelper()

Method Detail

loadFile

public static SBMLQualBundle loadFile(File f)
                               throws IOException,
                                      XMLStreamException

Throws:

IOException

XMLStreamException

parseInputStream

public static SBMLQualBundle parseInputStream(InputStream in)
                                       throws XMLStreamException

Throws:

XMLStreamException

parseFile

public static org.sbml.jsbml.SBMLDocument parseFile(File f)
                                             throws IOException,
                                                    XMLStreamException

Throws:

IOException

XMLStreamException

newBundle

public static SBMLQualBundle newBundle()

Create a new Bundle, with an empty qualitative model

Returns:

a new SBML document

newBundle

public static SBMLQualBundle newBundle(boolean addLayout)