Uses of Interface
org.colomoto.biolqm.modifier.ModelModifier

Packages that use ModelModifier

Package	Description
org.colomoto.biolqm.modifier	Modifications of logical models.
org.colomoto.biolqm.modifier.booleanize	Construct Boolean versions of Multi-valued models
org.colomoto.biolqm.modifier.buffer	Expand a model using "buffer components".
org.colomoto.biolqm.modifier.perturbation	Perturbation of logical models: local modifications of its logical functions.
org.colomoto.biolqm.modifier.reduction	model modification: remove components from the core.
org.colomoto.biolqm.modifier.reverse	model modification: creates a new model capable of generating the reverse dynamics.
org.colomoto.biolqm.modifier.sanitize	Cleanups and sanity-checks, preserving the same model
org.colomoto.biolqm.modifier.submodel
org.colomoto.biolqm.modifier.subspace

Uses of ModelModifier in org.colomoto.biolqm.modifier

Classes in org.colomoto.biolqm.modifier that implement ModelModifier

Modifier and Type	Class and Description
class	BaseModifier

Methods in org.colomoto.biolqm.modifier that return ModelModifier

Modifier and Type	Method and Description
ModelModifier	ModelModifierService.getModifier(LogicalModel model) Get a new modifier object.
default ModelModifier	ModelModifierService.getModifier(LogicalModel model, String parameters) Setup a new modifier object.

Uses of ModelModifier in org.colomoto.biolqm.modifier.booleanize

Classes in org.colomoto.biolqm.modifier.booleanize that implement ModelModifier

Modifier and Type	Class and Description
class	BooleanizeModifier Construct a Boolean version of a multi-valued model.

Methods in org.colomoto.biolqm.modifier.booleanize that return ModelModifier

Modifier and Type	Method and Description
ModelModifier	BooleanizeService.getModifier(LogicalModel model)

Uses of ModelModifier in org.colomoto.biolqm.modifier.buffer

Classes in org.colomoto.biolqm.modifier.buffer that implement ModelModifier

Modifier and Type	Class and Description
class	BufferingModifier

Methods in org.colomoto.biolqm.modifier.buffer that return ModelModifier

Modifier and Type	Method and Description
ModelModifier	BufferingService.getModifier(LogicalModel model)

Uses of ModelModifier in org.colomoto.biolqm.modifier.perturbation

Classes in org.colomoto.biolqm.modifier.perturbation that implement ModelModifier

Modifier and Type	Class and Description
class	PerturbationModifier

Methods in org.colomoto.biolqm.modifier.perturbation that return ModelModifier

Modifier and Type	Method and Description
ModelModifier	PerturbationService.getModifier(LogicalModel model)

Uses of ModelModifier in org.colomoto.biolqm.modifier.reduction

Classes in org.colomoto.biolqm.modifier.reduction that implement ModelModifier

Modifier and Type	Class and Description
class	PatternReduction
class	ReductionModifier

Uses of ModelModifier in org.colomoto.biolqm.modifier.reverse

Classes in org.colomoto.biolqm.modifier.reverse that implement ModelModifier

Modifier and Type	Class and Description
class	ReverseModifier Wrap ReverseOperation to properly create a new model capable of generating the reverse dynamics.

Methods in org.colomoto.biolqm.modifier.reverse that return ModelModifier

Modifier and Type	Method and Description
ModelModifier	ReverseService.getModifier(LogicalModel model)

Uses of ModelModifier in org.colomoto.biolqm.modifier.sanitize

Classes in org.colomoto.biolqm.modifier.sanitize that implement ModelModifier

Modifier and Type	Class and Description
class	SanitizeModifier

Methods in org.colomoto.biolqm.modifier.sanitize that return ModelModifier

Modifier and Type	Method and Description
ModelModifier	SanitizeService.getModifier(LogicalModel model)

Uses of ModelModifier in org.colomoto.biolqm.modifier.submodel

Classes in org.colomoto.biolqm.modifier.submodel that implement ModelModifier

Modifier and Type	Class and Description
class	SubmodelModifier Given a list of component names, this modifier will extract a sub-model containing: - the given list of components, - all dependent components of these nodes (involved in the logical functions) as input components (if they are not fixed values).

Methods in org.colomoto.biolqm.modifier.submodel that return ModelModifier

Modifier and Type	Method and Description
ModelModifier	SubmodelService.getModifier(LogicalModel model)

Uses of ModelModifier in org.colomoto.biolqm.modifier.subspace

Classes in org.colomoto.biolqm.modifier.subspace that implement ModelModifier

Modifier and Type	Class and Description
class	SubSpaceModifier Model Modifier to restrict a model into a subspace.

Methods in org.colomoto.biolqm.modifier.subspace that return ModelModifier

Modifier and Type	Method and Description
ModelModifier	SubSpaceService.getModifier(LogicalModel model)