| Package | Description |
|---|---|
| org.colomoto.biolqm.tool |
Tool definition, used to run actions from the command-line interface.
|
| org.colomoto.biolqm.tool.attractor |
Identification of the stable states of a logical model.
|
| org.colomoto.biolqm.tool.fixpoints |
Identification of the stable states of a logical model.
|
| org.colomoto.biolqm.tool.simulation.deterministic |
Implementation of updating schemes: update the state of a model (i.e.
|
| org.colomoto.biolqm.tool.simulation.random |
Implementation of updating schemes: update the state of a model (i.e.
|
| org.colomoto.biolqm.tool.trapspaces |
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractToolService<R,T extends ToolTask<R>>
Base class for the boring parts of tool declaration classes.
|
interface |
ModelToolService<R,T extends ToolTask<R>>
Simple tool description interface.
|
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractToolTask<R> |
| Modifier and Type | Class and Description |
|---|---|
class |
SATAttractorFinder
Identification of synchronous attractors using a SAT solver,
as proposed by E.
|
| Modifier and Type | Class and Description |
|---|---|
class |
FixpointTask |
| Modifier and Type | Class and Description |
|---|---|
class |
TraceTask |
| Modifier and Type | Class and Description |
|---|---|
class |
RandomWalkTask |
| Modifier and Type | Class and Description |
|---|---|
class |
TrapSpaceTask |
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