org.colomoto.biolqm.tool.simulation.grouping

Class ModelGrouping.RankedClass

java.lang.Object

org.colomoto.biolqm.tool.simulation.grouping.ModelGrouping.RankedClass

Enclosing class:

ModelGrouping

public class ModelGrouping.RankedClass
extends Object

Author:

Pedro T. Monteiro, Pedro L. Varela

Constructor Summary

Constructors

Constructor and Description
RankedClass(LogicalModel m, String textFormat)
RankedClass(ModelGrouping.RankedClassGroup pcg)

Method Summary

Modifier and Type	Method and Description
boolean	add(int idxGrp, int idxVar, int splitFlag)
void	addGrp(int pos, ModelGrouping.RankedClassGroup pcg)
ModelGrouping.RankedClass	clone()
void	collapse()
boolean	equals(Object o) Considers both classes with same ordered groups
void	expand()
int[]	getGroupValues(int idxGrp)
List<List<String>>	getVars(LogicalModel m)
boolean	isEmpty()
boolean	isValid(int idxGrp)
boolean	remove(int idxVar, int splitFlag)
boolean	remove(int idxGrp, int idxVar, int splitFlag) Removes a given variable/split pair from a class, if it exists.
ModelGrouping.RankedClassGroup	removeGrp(int idxGrp)
int	size()
boolean	split(int idxGrp, int idxVar) Splits a variable in two (in the current/selected class).
String	toString()
boolean	unsplit(int idxGrp, int idxVar, int splitFlag) Marks a given variable as not split.

Methods inherited from class java.lang.Object

finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

RankedClass

public RankedClass(ModelGrouping.RankedClassGroup pcg)

RankedClass

public RankedClass(LogicalModel m,
                   String textFormat)

Method Detail

isValid

public boolean isValid(int idxGrp)

size

public int size()

isEmpty

public boolean isEmpty()

removeGrp

public ModelGrouping.RankedClassGroup removeGrp(int idxGrp)

addGrp

public void addGrp(int pos,
                   ModelGrouping.RankedClassGroup pcg)

getGroupValues

public int[] getGroupValues(int idxGrp)

getVars

public List<List<String>> getVars(LogicalModel m)

collapse

public void collapse()

expand

public void expand()

split

public boolean split(int idxGrp,
                     int idxVar)

Splits a variable in two (in the current/selected class).

Parameters:

idxGrp -

idxVar -

unsplit

public boolean unsplit(int idxGrp,
                       int idxVar,
                       int splitFlag)

Marks a given variable as not split. The caller method is responsible for finding the variable complement on the other classes (or the present one).

Parameters:

idxGrp -

idxVar -

splitFlag -

Returns:

remove

public boolean remove(int idxGrp,
                      int idxVar,
                      int splitFlag)

Removes a given variable/split pair from a class, if it exists. Usually called for the complement of a previously unsplit variable.

Parameters:

idxGrp -

idxVar -

splitFlag -

Returns:

remove

public boolean remove(int idxVar,
                      int splitFlag)

add

public boolean add(int idxGrp,
                   int idxVar,
                   int splitFlag)

clone

public ModelGrouping.RankedClass clone()

Overrides:

clone in class Object

equals

public boolean equals(Object o)

Considers both classes with same ordered groups

Overrides:

equals in class Object

toString

public String toString()

Overrides:

toString in class Object