org.colomoto.biolqm.tool.simulation.grouping

Class ModelGrouping

java.lang.Object

org.colomoto.biolqm.tool.simulation.grouping.ModelGrouping

public class ModelGrouping
extends Object

Author:

Pedro T. Monteiro, Pedro L. Varela

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	ModelGrouping.RankedClass
class	ModelGrouping.RankedClassGroup

Field Summary

Fields

Modifier and Type	Field and Description
protected LogicalModel	model
static String	SEPCLASS
static String	SEPGROUP
static String	SEPVAR

Constructor Summary

Constructors

Constructor and Description
ModelGrouping(LogicalModel m)
ModelGrouping(LogicalModel m, String textFormat)

Method Summary

Modifier and Type	Method and Description
ModelGrouping	clone()
ModelGrouping	cloneWithModel(LogicalModel modifiedModel)
void	collapseAll()
void	decGroup(int idxPC, int idxGrp, List<String> vars)
void	decPriorities(int idxPC, int idxGrp, List<String> vars)
boolean	equals(Object a)
ModelGrouping.RankedClass	getClass(int idxPC)
List<List<String>>	getClassVars(int idxPC)
int[][]	getDeterministicBlocks()
LogicalModel	getModel()
void	groupCollapse(int idxPC)
void	groupExpand(int idxPC)
void	incGroup(int idxPC, int idxGrp, List<String> vars)
void	incPriorities(int idxPC, int idxGrp, List<String> vars)
int	size() It's the number of classes
void	split(int idxPC, int idxGrp, String var)
void	switchClasses(int i, int j)
String	toString()
void	unsplit(int idxPC, int idxGrp, String varMm)

Methods inherited from class java.lang.Object

finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

SEPVAR

public static final String SEPVAR

See Also:

Constant Field Values

SEPGROUP

public static final String SEPGROUP

See Also:

Constant Field Values

SEPCLASS

public static final String SEPCLASS

See Also:

Constant Field Values

model

protected LogicalModel model

Constructor Detail

ModelGrouping

public ModelGrouping(LogicalModel m)

ModelGrouping

public ModelGrouping(LogicalModel m,
                     String textFormat)

Method Detail

getModel

public LogicalModel getModel()

getDeterministicBlocks

public int[][] getDeterministicBlocks()

clone

public ModelGrouping clone()

Overrides:

clone in class Object

cloneWithModel

public ModelGrouping cloneWithModel(LogicalModel modifiedModel)

switchClasses

public void switchClasses(int i,
                          int j)

getClass

public ModelGrouping.RankedClass getClass(int idxPC)

getClassVars

public List<List<String>> getClassVars(int idxPC)

decPriorities

public void decPriorities(int idxPC,
                          int idxGrp,
                          List<String> vars)

decGroup

public void decGroup(int idxPC,
                     int idxGrp,
                     List<String> vars)

incGroup

public void incGroup(int idxPC,
                     int idxGrp,
                     List<String> vars)

incPriorities

public void incPriorities(int idxPC,
                          int idxGrp,
                          List<String> vars)

groupExpand

public void groupExpand(int idxPC)

groupCollapse

public void groupCollapse(int idxPC)

collapseAll

public void collapseAll()

size

public int size()

It's the number of classes

Returns:

split

public void split(int idxPC,
                  int idxGrp,
                  String var)

unsplit

public void unsplit(int idxPC,
                    int idxGrp,
                    String varMm)

equals

public boolean equals(Object a)

Overrides:

equals in class Object

toString

public String toString()

Overrides:

toString in class Object