org.colomoto.biolqm.tool.simulation.random

Class RandomUpdaterWithRates

java.lang.Object

org.colomoto.biolqm.tool.simulation.BaseUpdater

org.colomoto.biolqm.tool.simulation.random.AbstractRandomUpdater

org.colomoto.biolqm.tool.simulation.random.RandomUpdaterWithRates

All Implemented Interfaces:

LogicalModelUpdater, RandomUpdater

public class RandomUpdaterWithRates
extends AbstractRandomUpdater

Updater picking a random successor in the asynchronous scheme, with optional rates.

Author:

Aurelien Naldi

Field Summary

Fields inherited from class org.colomoto.biolqm.tool.simulation.random.AbstractRandomUpdater

random

Fields inherited from class org.colomoto.biolqm.tool.simulation.BaseUpdater

model, size

Constructor Summary

Constructors

Constructor and Description
RandomUpdaterWithRates(LogicalModel model) Create a new random random
RandomUpdaterWithRates(LogicalModel model, double[] rates)

Method Summary

Modifier and Type	Method and Description
byte[]	pickSuccessor(byte[] state) Get the successor of a state state.

Methods inherited from class org.colomoto.biolqm.tool.simulation.random.AbstractRandomUpdater

setSeed

Methods inherited from class org.colomoto.biolqm.tool.simulation.BaseUpdater

getModel, nodeChange, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.colomoto.biolqm.tool.simulation.LogicalModelUpdater

getModel

Constructor Detail

RandomUpdaterWithRates

public RandomUpdaterWithRates(LogicalModel model)

Create a new random random

Parameters:

model - the model for which the random is constructed

RandomUpdaterWithRates

public RandomUpdaterWithRates(LogicalModel model,
                              double[] rates)

Parameters:

model - the model for which the random is constructed

rates - the rates associated to each component

Method Detail

pickSuccessor

public byte[] pickSuccessor(byte[] state)

Description copied from interface: RandomUpdater

Get the successor of a state state.

Parameters:

state - the current state

Returns:

the successor state