| Package | Description |
|---|---|
| org.disq_bio.disq |
| Class and Description |
|---|
| BaiWriteOption
An option for for enabling or disabling writing BAI files.
|
| CraiWriteOption
An option for for enabling or disabling writing CRAI files.
|
| FileCardinalityWriteOption
An option for configuring whether to write output in a single file, or multiple files.
|
| HtsjdkReadsRdd
A
HtsjdkReadsRdd is the distributed equivalent of a htsjdk SamReader. |
| HtsjdkReadsRddStorage
The entry point for reading or writing a
HtsjdkReadsRdd. |
| HtsjdkReadsTraversalParameters
Holds parameters controlling which reads get returned when reading a
HtsjdkReadsRdd. |
| HtsjdkVariantsRdd
A
HtsjdkVariantsRdd is the distributed equivalent of a htsjdk VCFFileReader. |
| HtsjdkVariantsRddStorage
The entry point for reading or writing a
HtsjdkVariantsRdd. |
| ReadsFormatWriteOption
An option for configuring which format to write a
HtsjdkReadsRdd as. |
| SbiWriteOption
An option for for enabling or disabling writing SBI files.
|
| TabixIndexWriteOption
An option for for enabling or disabling writing tabix files.
|
| VariantsFormatWriteOption
An option for configuring which format to write a
HtsjdkVariantsRdd as. |
| WriteOption
An option for configuring how to write output.
|
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