org.encog.solve.genetic.genome
Class BasicGenome

java.lang.Object
  org.encog.solve.genetic.genome.BasicGenome

All Implemented Interfaces:

Comparable<Genome>, Genome

Direct Known Subclasses:

NEATGenome, NeuralGenome

public abstract class BasicGenome
extends Object
implements Genome

A basic abstract genome. Provides base functionality.

Constructor Summary

BasicGenome(GeneticAlgorithm geneticAlgorithm)
Construct a basic genome.

Method Summary

int	calculateGeneCount()
int	compareTo(Genome other)
double	getAdjustedScore() Get the adjusted score, this considers old-age penalties and youth bonuses.
double	getAmountToSpawn()
List<Chromosome>	getChromosomes()
GeneticAlgorithm	getGeneticAlgorithm()
long	getGenomeID()
Object	getOrganism()
double	getScore()
void	mate(Genome father, Genome child1, Genome child2) Mate two genomes.
void	setAdjustedScore(double adjustedScore) Set the adjusted score.
void	setAmountToSpawn(double amountToSpawn) Set the amount to spawn.
void	setGeneticAlgorithm(GeneticAlgorithm ga) Set the genetic algorithm to use.
void	setGenomeID(long genomeID) Set the genome id.
void	setOrganism(Object organism) Set the organism.
void	setScore(double score) Set the score.
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.encog.solve.genetic.genome.Genome

decode, encode

Constructor Detail

BasicGenome

public BasicGenome(GeneticAlgorithm geneticAlgorithm)

Construct a basic genome.

Parameters:

geneticAlgorithm -

Method Detail

calculateGeneCount

public int calculateGeneCount()

Specified by:

calculateGeneCount in interface Genome

Returns:

The number of genes in this genome.

compareTo

public int compareTo(Genome other)

Specified by:

compareTo in interface Comparable<Genome>

getAdjustedScore

public double getAdjustedScore()

Description copied from interface: Genome

Get the adjusted score, this considers old-age penalties and youth bonuses. If there are no such bonuses or penalties, this is the same as the score.

Specified by:

getAdjustedScore in interface Genome

Returns:

The adjusted score, which considers bonuses.

getAmountToSpawn

public double getAmountToSpawn()

Specified by:

getAmountToSpawn in interface Genome

Returns:

The amount this genome will spawn.

getChromosomes

public List<Chromosome> getChromosomes()

Specified by:

getChromosomes in interface Genome

Returns:

The number of chromosomes.

getGeneticAlgorithm

public GeneticAlgorithm getGeneticAlgorithm()

Returns:

The genetic algorithm.

getGenomeID

public long getGenomeID()

Specified by:

getGenomeID in interface Genome

Returns:

The genome id.

getOrganism

public Object getOrganism()

Specified by:

getOrganism in interface Genome

Returns:

The organism produced.

getScore

public double getScore()

Specified by:

getScore in interface Genome

Returns:

The score.

mate

public void mate(Genome father,
                 Genome child1,
                 Genome child2)

Mate two genomes. Will loop over all chromosomes.

Specified by:

mate in interface Genome

Parameters:

father - The father.

child1 - The first child.

child2 - The second child.

setAdjustedScore

public void setAdjustedScore(double adjustedScore)

Set the adjusted score.

Specified by:

setAdjustedScore in interface Genome

Parameters:

adjustedScore - The score.

setAmountToSpawn

public void setAmountToSpawn(double amountToSpawn)

Set the amount to spawn.

Specified by:

setAmountToSpawn in interface Genome

Parameters:

amountToSpawn - The amount to spawn.

setGeneticAlgorithm

public void setGeneticAlgorithm(GeneticAlgorithm ga)

Set the genetic algorithm to use.

Parameters:

ga - The genetic algorithm to use.

setGenomeID

public void setGenomeID(long genomeID)

Set the genome id.

Specified by:

setGenomeID in interface Genome

Parameters:

genomeID - the genome id.

setOrganism

public void setOrganism(Object organism)

Set the organism.

Parameters:

organism - The organism.

setScore

public void setScore(double score)

Set the score.

Specified by:

setScore in interface Genome

Parameters:

score - Set the score.

toString

public String toString()

Overrides:

toString in class Object