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## org.encog.ml.genetic.genome
Class BasicGenome

    java.lang.Object
      org.encog.ml.genetic.genome.BasicGenome

All Implemented Interfaces:
  Serializable, Comparable<Genome>, Genome

Direct Known Subclasses:
  NEATGenome, NeuralGenome

    public abstract class BasicGenome

extends Object
implements Genome, Serializable

A basic abstract genome. Provides base functionality.

See Also:
  Serialized Form

Constructor Summary
`BasicGenome()`

Method Summary
`int` | `calculateGeneCount()`
`int` | `compareTo(Genome other)`
`double` | `getAdjustedScore()` Get the adjusted score, this considers old-age penalties and youth bonuses.
`double` | `getAmountToSpawn()`
`List<Chromosome>` | `getChromosomes()`
`GeneticAlgorithm` | `getGeneticAlgorithm()`
`long` | `getGenomeID()`
`Object` | `getOrganism()`
`Population` | `getPopulation()`
`double` | `getScore()`
`void` | `mate(Genome father, Genome child1, Genome child2)` Mate two genomes.
`void` | `setAdjustedScore(double theAdjustedScore)` Set the adjusted score.
`void` | `setAmountToSpawn(double theAmountToSpawn)` Set the amount to spawn.
`void` | `setGeneticAlgorithm(GeneticAlgorithm ga)` Set the genetic algorithm to use.
`void` | `setGenomeID(long theGenomeID)` Set the genome id.
`void` | `setOrganism(Object theOrganism)` Set the organism.
`void` | `setPopulation(Population thePopulation)` Set the population that this genome belongs to.
`void` | `setScore(double theScore)` Set the score.
`String` | `toString()`

Methods inherited from class java.lang.Object
`clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait`

Methods inherited from interface org.encog.ml.genetic.genome.Genome
`decode, encode`

Constructor Detail

### BasicGenome

    public BasicGenome()

Method Detail

### calculateGeneCount

    public final int calculateGeneCount()

  Specified by:
    `calculateGeneCount` in interface `Genome`
  Returns:
    The number of genes in this genome.

### compareTo

    public final int compareTo(Genome other)

  Specified by:
    `compareTo` in interface `Comparable<Genome>`

### getAdjustedScore

    public final double getAdjustedScore()

  Description copied from interface: `Genome`
  Get the adjusted score, this considers old-age penalties and youth bonuses. If there are no such bonuses or penalties, this is the same as the score.

  Specified by:
    `getAdjustedScore` in interface `Genome`
  Returns:
    The adjusted score, which considers bonuses.

### getAmountToSpawn

    public final double getAmountToSpawn()

  Specified by:
    `getAmountToSpawn` in interface `Genome`
  Returns:
    The amount this genome will spawn.

### getChromosomes

    public final List<Chromosome> getChromosomes()

  Specified by:
    `getChromosomes` in interface `Genome`
  Returns:
    The number of chromosomes.

### getGeneticAlgorithm

    public final GeneticAlgorithm getGeneticAlgorithm()

  Specified by:
    `getGeneticAlgorithm` in interface `Genome`
  Returns:
    The genetic algorithm.

### getGenomeID

    public final long getGenomeID()

  Specified by:
    `getGenomeID` in interface `Genome`
  Returns:
    The genome id.

### getOrganism

    public final Object getOrganism()

  Specified by:
    `getOrganism` in interface `Genome`
  Returns:
    The organism produced.

### getPopulation

    public final Population getPopulation()

  Specified by:
    `getPopulation` in interface `Genome`
  Returns:
    the population

### getScore

    public final double getScore()

  Specified by:
    `getScore` in interface `Genome`
  Returns:
    The score.

### mate

    public final void mate(Genome father,
                           Genome child1,
                           Genome child2)

  Mate two genomes. Will loop over all chromosomes.

  Specified by:
    `mate` in interface `Genome`
  Parameters:
    `father` - The father.
    `child1` - The first child.
    `child2` - The second child.

### setAdjustedScore

    public final void setAdjustedScore(double theAdjustedScore)

  Set the adjusted score.

  Specified by:
    `setAdjustedScore` in interface `Genome`
  Parameters:
    `theAdjustedScore` - The score.

### setAmountToSpawn

    public final void setAmountToSpawn(double theAmountToSpawn)

  Set the amount to spawn.

  Specified by:
    `setAmountToSpawn` in interface `Genome`
  Parameters:
    `theAmountToSpawn` - The amount to spawn.

### setGeneticAlgorithm

    public final void setGeneticAlgorithm(GeneticAlgorithm ga)

  Set the genetic algorithm to use.

  Specified by:
    `setGeneticAlgorithm` in interface `Genome`
  Parameters:
    `ga` - The genetic algorithm to use.

### setGenomeID

    public final void setGenomeID(long theGenomeID)

  Set the genome id.

  Specified by:
    `setGenomeID` in interface `Genome`
  Parameters:
    `theGenomeID` - the genome id.

### setOrganism

    public final void setOrganism(Object theOrganism)

  Set the organism.

  Parameters:
    `theOrganism` - The organism.

### setPopulation

    public final void setPopulation(Population thePopulation)

  Description copied from interface: `Genome`
  Set the population that this genome belongs to.

  Specified by:
    `setPopulation` in interface `Genome`
  Parameters:
    `thePopulation` - the population to set

### setScore

    public final void setScore(double theScore)

  Set the score.

  Specified by:
    `setScore` in interface `Genome`
  Parameters:
    `theScore` - Set the score.

### toString

    public final String toString()

  Overrides:
    `toString` in class `Object`

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