org.encog.ml.genetic.genome
Class BasicGenome

java.lang.Object
  org.encog.ml.genetic.genome.BasicGenome

All Implemented Interfaces:

Serializable, Comparable<Genome>, Genome

Direct Known Subclasses:

NEATGenome, NeuralGenome

public abstract class BasicGenome
extends Object
implements Genome, Serializable

A basic abstract genome. Provides base functionality.

See Also:

Serialized Form

Constructor Summary

BasicGenome()

Method Summary

int	calculateGeneCount()
int	compareTo(Genome other)
boolean	equals(Genome other)
double	getAdjustedScore() Get the adjusted score, this considers old-age penalties and youth bonuses.
double	getAmountToSpawn()
List<Chromosome>	getChromosomes()
GeneticAlgorithm	getGeneticAlgorithm()
long	getGenomeID()
Object	getOrganism()
Population	getPopulation()
double	getScore()
void	mate(Genome father, Genome child1, Genome child2) Mate two genomes.
void	setAdjustedScore(double theAdjustedScore) Set the adjusted score.
void	setAmountToSpawn(double theAmountToSpawn) Set the amount to spawn.
void	setGeneticAlgorithm(GeneticAlgorithm ga) Set the genetic algorithm to use.
void	setGenomeID(long theGenomeID) Set the genome id.
void	setOrganism(Object theOrganism) Set the organism.
void	setPopulation(Population thePopulation) Set the population that this genome belongs to.
void	setScore(double theScore) Set the score.
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.encog.ml.genetic.genome.Genome

decode, encode

Constructor Detail

BasicGenome

public BasicGenome()

Method Detail

calculateGeneCount

public final int calculateGeneCount()

Specified by:

calculateGeneCount in interface Genome

Returns:

The number of genes in this genome.

equals

public boolean equals(Genome other)

compareTo

public final int compareTo(Genome other)

Specified by:

compareTo in interface Comparable<Genome>

getAdjustedScore

public final double getAdjustedScore()

Description copied from interface: Genome

Get the adjusted score, this considers old-age penalties and youth bonuses. If there are no such bonuses or penalties, this is the same as the score.

Specified by:

getAdjustedScore in interface Genome

Returns:

The adjusted score, which considers bonuses.

getAmountToSpawn

public final double getAmountToSpawn()

Specified by:

getAmountToSpawn in interface Genome

Returns:

The amount this genome will spawn.

getChromosomes

public final List<Chromosome> getChromosomes()

Specified by:

getChromosomes in interface Genome

Returns:

The number of chromosomes.

getGeneticAlgorithm

public final GeneticAlgorithm getGeneticAlgorithm()

Specified by:

getGeneticAlgorithm in interface Genome

Returns:

The genetic algorithm.

getGenomeID

public final long getGenomeID()

Specified by:

getGenomeID in interface Genome

Returns:

The genome id.

getOrganism

public final Object getOrganism()

Specified by:

getOrganism in interface Genome

Returns:

The organism produced.

getPopulation

public final Population getPopulation()

Specified by:

getPopulation in interface Genome

Returns:

the population

getScore

public final double getScore()

Specified by:

getScore in interface Genome

Returns:

The score.

mate

public final void mate(Genome father,
                       Genome child1,
                       Genome child2)

Mate two genomes. Will loop over all chromosomes.

Specified by:

mate in interface Genome

Parameters:

father - The father.

child1 - The first child.

child2 - The second child.

setAdjustedScore

public final void setAdjustedScore(double theAdjustedScore)

Set the adjusted score.

Specified by:

setAdjustedScore in interface Genome

Parameters:

theAdjustedScore - The score.

setAmountToSpawn

public final void setAmountToSpawn(double theAmountToSpawn)

Set the amount to spawn.

Specified by:

setAmountToSpawn in interface Genome

Parameters:

theAmountToSpawn - The amount to spawn.

setGeneticAlgorithm

public final void setGeneticAlgorithm(GeneticAlgorithm ga)

Set the genetic algorithm to use.

Specified by:

setGeneticAlgorithm in interface Genome

Parameters:

ga - The genetic algorithm to use.

setGenomeID

public final void setGenomeID(long theGenomeID)

Set the genome id.

Specified by:

setGenomeID in interface Genome

Parameters:

theGenomeID - the genome id.

setOrganism

public final void setOrganism(Object theOrganism)

Set the organism.

Parameters:

theOrganism - The organism.

setPopulation

public final void setPopulation(Population thePopulation)

Description copied from interface: Genome

Set the population that this genome belongs to.

Specified by:

setPopulation in interface Genome

Parameters:

thePopulation - the population to set

setScore

public final void setScore(double theScore)

Set the score.

Specified by:

setScore in interface Genome

Parameters:

theScore - Set the score.

toString

public final String toString()

Overrides:

toString in class Object