org.encog.neural.hyperneat
Class HyperNEATGenome

java.lang.Object
  org.encog.ml.ea.genome.BasicGenome
      org.encog.neural.neat.training.NEATGenome
          org.encog.neural.hyperneat.HyperNEATGenome

All Implemented Interfaces:

Serializable, Cloneable, Genome, MLMethod

public class HyperNEATGenome
extends NEATGenome

A HyperNEAT genome.

See Also:

Serialized Form

Constructor Summary

HyperNEATGenome()
Construct a HyperNEAT genome.

HyperNEATGenome(HyperNEATGenome other)

HyperNEATGenome(List<NEATNeuronGene> neurons, List<NEATLinkGene> links, int inputCount, int outputCount)
Construct a HyperNEAT genome from a list of neurons and links.

HyperNEATGenome(Random rnd, NEATPopulation pop, int inputCount, int outputCount, double connectionDensity)
Construct a random HyperNEAT genome.

Method Summary

static void

buildCPPNActivationFunctions(ChooseObject<ActivationFunction> activationFunctions) Build the CPPN activation functions.

Methods inherited from class org.encog.neural.neat.training.NEATGenome

copy, findNeuron, getInputCount, getLinksChromosome, getNetworkDepth, getNeuronsChromosome, getNumGenes, getOutputCount, setInputCount, setNetworkDepth, setOutputCount, size, sortGenes, toString, validate

Methods inherited from class org.encog.ml.ea.genome.BasicGenome

getAdjustedScore, getBirthGeneration, getPopulation, getScore, getSpecies, setAdjustedScore, setBirthGeneration, setPopulation, setScore, setSpecies

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

HyperNEATGenome

public HyperNEATGenome()

Construct a HyperNEAT genome.

HyperNEATGenome

public HyperNEATGenome(HyperNEATGenome other)

HyperNEATGenome

public HyperNEATGenome(List<NEATNeuronGene> neurons,
                       List<NEATLinkGene> links,
                       int inputCount,
                       int outputCount)

Construct a HyperNEAT genome from a list of neurons and links.

Parameters:

neurons - The neurons.

links - The links.

inputCount - The input count.

outputCount - The output count.

HyperNEATGenome

public HyperNEATGenome(Random rnd,
                       NEATPopulation pop,
                       int inputCount,
                       int outputCount,
                       double connectionDensity)

Construct a random HyperNEAT genome.

Parameters:

rnd - Random number generator.

pop - The target population.

inputCount - The input count.

outputCount - The output count.

connectionDensity - The connection densitoy, 1.0 for fully connected.

Method Detail

buildCPPNActivationFunctions

public static void buildCPPNActivationFunctions(ChooseObject<ActivationFunction> activationFunctions)

Build the CPPN activation functions.

Parameters:

activationFunctions - The activation functions collection to add to.