edu.emory.cci.aiw.i2b2etl.dest.table

Class FactHandler

java.lang.Object

edu.emory.cci.aiw.i2b2etl.util.RecordHandler<ObservationFact>

edu.emory.cci.aiw.i2b2etl.dest.table.AbstractFactHandler

edu.emory.cci.aiw.i2b2etl.dest.table.FactHandler

All Implemented Interfaces:

AutoCloseable

Direct Known Subclasses:

PropositionFactHandler

public abstract class FactHandler
extends AbstractFactHandler

Author:

Andrew Post

Field Summary

Fields

Modifier and Type	Field and Description
static String	TEMP_OBSERVATION_COMPLETE_TABLE
static String	TEMP_OBSERVATION_TABLE

Constructor Summary

Constructors

Constructor and Description
FactHandler(org.arp.javautil.sql.ConnectionSpec connSpec, String propertyName, String startConfig, String finishConfig, String unitsPropertyName, Metadata metadata, RejectedFactHandlerFactory rejectedFactHandlerFactory)

Method Summary

Modifier and Type	Method and Description
void	close()
String	getFinishConfig()
String	getPropertyName()
String	getStartConfig()
String	getUnitsPropertyName()
protected Date	handleFinishDate(org.protempa.proposition.Proposition prop, org.protempa.proposition.Proposition encounterProp, org.protempa.proposition.value.Value propertyVal)
abstract void	handleRecord(PatientDimension patient, VisitDimension visit, ProviderDimension provider, org.protempa.proposition.Proposition encounterProp, Map<org.protempa.proposition.Proposition,List<org.protempa.proposition.Proposition>> forwardDerivations, Map<org.protempa.proposition.Proposition,List<org.protempa.proposition.Proposition>> backwardDerivations, Map<org.protempa.proposition.UniqueId,org.protempa.proposition.Proposition> references, Set<org.protempa.proposition.Proposition> derivedPropositions)
protected Date	handleStartDate(org.protempa.proposition.Proposition prop, org.protempa.proposition.Proposition encounterProp, org.protempa.proposition.value.Value propertyVal)
protected String	handleUnits(org.protempa.proposition.Proposition prop)
void	insert(ObservationFact record)
protected ObservationFact	populateObxFact(org.protempa.proposition.Proposition prop, org.protempa.proposition.Proposition encounterProp, PatientDimension patient, VisitDimension visit, ProviderDimension provider, PropertyConceptId conceptId, ModifierConceptId modConceptId)

Methods inherited from class edu.emory.cci.aiw.i2b2etl.dest.table.AbstractFactHandler

setParameters

Methods inherited from class edu.emory.cci.aiw.i2b2etl.util.RecordHandler

getConnection, importTimestamp

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

TEMP_OBSERVATION_TABLE

public static final String TEMP_OBSERVATION_TABLE

See Also:

Constant Field Values

TEMP_OBSERVATION_COMPLETE_TABLE

public static final String TEMP_OBSERVATION_COMPLETE_TABLE

See Also:

Constant Field Values

Constructor Detail

FactHandler

public FactHandler(org.arp.javautil.sql.ConnectionSpec connSpec,
                   String propertyName,
                   String startConfig,
                   String finishConfig,
                   String unitsPropertyName,
                   Metadata metadata,
                   RejectedFactHandlerFactory rejectedFactHandlerFactory)
            throws SQLException

Throws:

SQLException

Method Detail

getStartConfig

public String getStartConfig()

getFinishConfig

public String getFinishConfig()

getUnitsPropertyName

public String getUnitsPropertyName()

getPropertyName

public String getPropertyName()

close

public void close()
           throws SQLException

Specified by:

close in interface AutoCloseable

Overrides:

close in class RecordHandler<ObservationFact>

Throws:

SQLException

handleRecord

public abstract void handleRecord(PatientDimension patient,
                                  VisitDimension visit,
                                  ProviderDimension provider,
                                  org.protempa.proposition.Proposition encounterProp,
                                  Map<org.protempa.proposition.Proposition,List<org.protempa.proposition.Proposition>> forwardDerivations,
                                  Map<org.protempa.proposition.Proposition,List<org.protempa.proposition.Proposition>> backwardDerivations,
                                  Map<org.protempa.proposition.UniqueId,org.protempa.proposition.Proposition> references,
                                  Set<org.protempa.proposition.Proposition> derivedPropositions)
                           throws InvalidFactException

Throws:

InvalidFactException

populateObxFact

protected ObservationFact populateObxFact(org.protempa.proposition.Proposition prop,
                                          org.protempa.proposition.Proposition encounterProp,
                                          PatientDimension patient,
                                          VisitDimension visit,
                                          ProviderDimension provider,
                                          PropertyConceptId conceptId,
                                          ModifierConceptId modConceptId)
                                   throws InvalidFactException

Throws:

InvalidFactException

insert

public void insert(ObservationFact record)
            throws SQLException

Overrides:

insert in class RecordHandler<ObservationFact>

Throws:

SQLException

handleUnits

protected final String handleUnits(org.protempa.proposition.Proposition prop)

handleStartDate

protected final Date handleStartDate(org.protempa.proposition.Proposition prop,
                                     org.protempa.proposition.Proposition encounterProp,
                                     org.protempa.proposition.value.Value propertyVal)
                              throws InvalidFactException

Throws:

InvalidFactException

handleFinishDate

protected final Date handleFinishDate(org.protempa.proposition.Proposition prop,
                                      org.protempa.proposition.Proposition encounterProp,
                                      org.protempa.proposition.value.Value propertyVal)
                               throws InvalidFactException

Throws:

InvalidFactException