A B C D E F G H I L M N O P Q R S T U V X

A

AbstractFactHandler - Class in edu.emory.cci.aiw.i2b2etl.dest.table

AbstractRecord - Class in edu.emory.cci.aiw.i2b2etl.dest.table

AbstractSettings - Class in edu.emory.cci.aiw.i2b2etl.dest.config

AbstractSettings() - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.config.AbstractSettings

ActiveStatusCode - Class in edu.emory.cci.aiw.i2b2etl.dest.table

Represents the possible values of the ACTIVE_STATUS_CD attribute in the VISIT_DIMENSION table.

ActiveStatusCodeEndDate - Enum in edu.emory.cci.aiw.i2b2etl.dest.table

ActiveStatusCodeStartDate - Enum in edu.emory.cci.aiw.i2b2etl.dest.table

addHierarchyPath(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

addHierarchyPath(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

addModifierRoot(Concept) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata

addProvider(ProviderDimension) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata

addRejectionReason(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

addRejectionReason(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.AbstractRecord

addToIdCache(Concept) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata

appendStatement(StringBuilder, String) - Method in interface edu.emory.cci.aiw.i2b2etl.ksb.QueryConstructor

asBuilder() - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2B2QueryResultsHandlerSourceId

B

build() - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2B2QueryResultsHandlerSourceIdBuilder

build(Concept) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.DemographicsBuilder

build(Concept) - Method in interface edu.emory.cci.aiw.i2b2etl.dest.metadata.SubtreeBuilder

C

C_FULLNAME_ATTRIBUTE_NAME - Static variable in class edu.emory.cci.aiw.i2b2etl.util.Util

clear() - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2b2Statistics

close() - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2b2QueryResultsHandler

close() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.FactHandler

close() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimensionFactory

close() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler

close() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ProviderDimensionFactory

close() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimensionFactory

close() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

close() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.QueryExecutor

close() - Method in class edu.emory.cci.aiw.i2b2etl.util.RecordHandler

CODE_LENGTH - Static variable in class edu.emory.cci.aiw.i2b2etl.util.CodeUtil

CodeUtil - Class in edu.emory.cci.aiw.i2b2etl.util

CodeUtil() - Constructor for class edu.emory.cci.aiw.i2b2etl.util.CodeUtil

collectPropDefDescendantsUsingAllNarrower(boolean, String[]) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

collectPropDefDescendantsUsingInverseIsA(String[]) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

collectPropIdDescendantsUsingAllNarrower(boolean, String[]) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

collectPropIdDescendantsUsingInverseIsA(String[]) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

Concept - Class in edu.emory.cci.aiw.i2b2etl.dest.metadata

Concept(ConceptId, String, Metadata) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

ConceptDimension - Class in edu.emory.cci.aiw.i2b2etl.dest.table

Represents records in the concept dimension.

ConceptDimension() - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptDimension

ConceptDimensionHandler - Class in edu.emory.cci.aiw.i2b2etl.dest.table

ConceptDimensionHandler(ConnectionSpec) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptDimensionHandler

ConceptDimensionLoader - Class in edu.emory.cci.aiw.i2b2etl.dest.table

ConceptDimensionLoader(ConceptDimensionHandler) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptDimensionLoader

ConceptHierarchyLoader - Class in edu.emory.cci.aiw.i2b2etl.dest.table

ConceptHierarchyLoader() - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptHierarchyLoader

ConceptId - Interface in edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid

ConceptOperator - Enum in edu.emory.cci.aiw.i2b2etl.dest.metadata

ConceptProperty - Class in edu.emory.cci.aiw.i2b2etl.ksb

ConceptProperty(String, String) - Constructor for class edu.emory.cci.aiw.i2b2etl.ksb.ConceptProperty

Concepts - Interface in edu.emory.cci.aiw.i2b2etl.dest.config

Configuration - Interface in edu.emory.cci.aiw.i2b2etl.dest.config

ConfigurationInitException - Exception in edu.emory.cci.aiw.i2b2etl.dest.config

ConfigurationInitException(Throwable) - Constructor for exception edu.emory.cci.aiw.i2b2etl.dest.config.ConfigurationInitException

ConfigurationInitException(String, Throwable) - Constructor for exception edu.emory.cci.aiw.i2b2etl.dest.config.ConfigurationInitException

ConfigurationInitException(String) - Constructor for exception edu.emory.cci.aiw.i2b2etl.dest.config.ConfigurationInitException

ConfigurationInitException() - Constructor for exception edu.emory.cci.aiw.i2b2etl.dest.config.ConfigurationInitException

constantSpecs(String, String, String, String) - Method in class edu.emory.cci.aiw.i2b2etl.dsb.I2B2DataSourceBackend

D

Data - Interface in edu.emory.cci.aiw.i2b2etl.dest.config

Database - Interface in edu.emory.cci.aiw.i2b2etl.dest.config

DatabaseSpec - Class in edu.emory.cci.aiw.i2b2etl.dest.config

DataSourceDatabaseSpec - Class in edu.emory.cci.aiw.i2b2etl.dest.config

DataSourceDatabaseSpec(String, String, String) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.config.DataSourceDatabaseSpec

DataSpec - Class in edu.emory.cci.aiw.i2b2etl.dest.config

DataSpec(String, String, String, String, String, String, String) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.config.DataSpec

DataType - Enum in edu.emory.cci.aiw.i2b2etl.dest.metadata

dataTypeFor(ValueType) - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.metadata.DataType

DEFAULT_CONCEPT_ID_PREFIX_INTERNAL - Static variable in class edu.emory.cci.aiw.i2b2etl.dest.metadata.MetadataUtil

DemographicsBuilder - Class in edu.emory.cci.aiw.i2b2etl.dest.metadata

DemographicsBuilder(KnowledgeSourceCache, Metadata) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.metadata.DemographicsBuilder

DimensionFactory - Class in edu.emory.cci.aiw.i2b2etl.dest.table

DimensionFactory(Data) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.DimensionFactory

DriverManagerDatabaseSpec - Class in edu.emory.cci.aiw.i2b2etl.dest.config

DriverManagerDatabaseSpec(String, String, String) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.config.DriverManagerDatabaseSpec

E

edu.emory.cci.aiw.i2b2etl.dest - package edu.emory.cci.aiw.i2b2etl.dest

edu.emory.cci.aiw.i2b2etl.dest.config - package edu.emory.cci.aiw.i2b2etl.dest.config

edu.emory.cci.aiw.i2b2etl.dest.config.xml - package edu.emory.cci.aiw.i2b2etl.dest.config.xml

edu.emory.cci.aiw.i2b2etl.dest.metadata - package edu.emory.cci.aiw.i2b2etl.dest.metadata

edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid - package edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid

edu.emory.cci.aiw.i2b2etl.dest.table - package edu.emory.cci.aiw.i2b2etl.dest.table

edu.emory.cci.aiw.i2b2etl.dsb - package edu.emory.cci.aiw.i2b2etl.dsb

edu.emory.cci.aiw.i2b2etl.ksb - package edu.emory.cci.aiw.i2b2etl.ksb

edu.emory.cci.aiw.i2b2etl.util - package edu.emory.cci.aiw.i2b2etl.util

EMPTY_CONCEPT_ARRAY - Static variable in interface edu.emory.cci.aiw.i2b2etl.dest.metadata.SubtreeBuilder

EncounterIdeStatusCode - Enum in edu.emory.cci.aiw.i2b2etl.dest.table

EncounterMappingHandler - Class in edu.emory.cci.aiw.i2b2etl.dest.table

EncounterMappingHandler(ConnectionSpec) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.EncounterMappingHandler

equals(Object) - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2B2QueryResultsHandlerSourceIdBuilder

equals(Object) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ModifierConceptId

equals(Object) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ModifierParentConceptId

equals(Object) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId

equals(Object) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.SimpleConceptId

eventSpecs(String, String, String, String) - Method in class edu.emory.cci.aiw.i2b2etl.dsb.I2B2DataSourceBackend

execute(Concept...) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptHierarchyLoader

execute(ResultSetReader<E>) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.QueryExecutor

execute(String, ResultSetReader<E>) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.QueryExecutor

execute(ParameterSetter, ResultSetReader<E>) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.QueryExecutor

extractDerived() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata

F

FactHandler - Class in edu.emory.cci.aiw.i2b2etl.dest.table

FactHandler(ConnectionSpec, String, String, String, String, Metadata, RejectedFactHandlerFactory) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.FactHandler

finish() - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2b2QueryResultsHandler

FolderSpec - Class in edu.emory.cci.aiw.i2b2etl.dest.config

FolderSpec(String, String[], String, String, ValueTypeCode, boolean, ModifierSpec[]) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.config.FolderSpec

fromCode(String) - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.table.VitalStatusCode

G

get(String) - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Data

getActiveStatus() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

getAgeConceptCodePrefix() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getAgeInYears() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

getAgeInYearsPropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getAll() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Data

getAllRoots() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata

getAppliedPath() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getAppliedPath() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

getBirthDate() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

getChildrenToParents() - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2b2Statistics

getChildrenToParents(String[]) - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2b2Statistics

getCode() - Method in enum edu.emory.cci.aiw.i2b2etl.dest.metadata.DataType

getCode() - Method in enum edu.emory.cci.aiw.i2b2etl.dest.metadata.SynonymCode

getCode() - Method in enum edu.emory.cci.aiw.i2b2etl.dest.metadata.ValueTypeCode

getCode() - Method in enum edu.emory.cci.aiw.i2b2etl.dest.table.ActiveStatusCodeEndDate

getCode() - Method in enum edu.emory.cci.aiw.i2b2etl.dest.table.ActiveStatusCodeStartDate

getCode() - Method in enum edu.emory.cci.aiw.i2b2etl.dest.table.EncounterIdeStatusCode

getCode() - Method in enum edu.emory.cci.aiw.i2b2etl.dest.table.PatientIdeStatusCode

getCode() - Method in enum edu.emory.cci.aiw.i2b2etl.dest.table.ValueFlagCode

Gets the code to put into the VALUEFLAG_CD attribute.

getCode() - Method in enum edu.emory.cci.aiw.i2b2etl.dest.table.VitalStatusCode

Gets the code to put into the VITAL_STATUS_CD attribute.

getCodePrefix() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.ModifierSpec

getColumnName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getComment() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getComment() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

getConcept() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

getConcept() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ProviderDimension

Returns the provider's unique id, or null if the provider is not recorded or unknown.

getConceptCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getConceptCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

getConceptCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptDimension

getConceptCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimension

getConceptCodePrefix() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.DataSpec

getConceptCodePrefix() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.FolderSpec

getConceptCodePrefix() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getConceptCodePrefix() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

getConceptRoot() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata

getConcepts() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Configuration

getConcepts() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.xml.XmlFileConfiguration

getConnect() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.DatabaseSpec

getConnection() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.QueryExecutor

getConnection() - Method in class edu.emory.cci.aiw.i2b2etl.util.RecordHandler

getConnectionSpec() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.RejectedFactHandlerFactory

getCounts() - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2b2Statistics

getCounts(String[]) - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2b2Statistics

getCPath() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getCPath() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

getCVisualAttributes() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getData() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Configuration

getData() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.xml.XmlFileConfiguration

getData() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.DimensionFactory

getDatabase() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Configuration

getDatabase() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.xml.XmlFileConfiguration

getDatabaseAPI() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.DatabaseSpec

getDatabaseAPI() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.DataSourceDatabaseSpec

getDatabaseAPI() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.DriverManagerDatabaseSpec

getDatabaseApi() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

Returns which Java database API this backend is configured to use.

getDatabaseId() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getDataRemoveMethod() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getDataSection() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata

getDataSpec() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Database

getDataType() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getDataType() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

getDateOfBirthPropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getDateOfDeathPropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getDeathDate() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

getDeleted() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ProviderDimension

getDeletedDate() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

getDeletedDate() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

getDeletedDate() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

getDimCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getDimensionDataTypes() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.AbstractSettings

getDimensionDataTypes() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getDimensionDataTypes() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.SettingsSupport

getDisplayName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.FolderSpec

getDisplayName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.ModifierSpec

getDisplayName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getDisplayName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

getDisplayName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptDimension

getDisplayName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimension

getDisplayName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

getDownloadDate() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

getDownloaded() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getDownloaded() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

getDownloaded() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptDimension

getDownloaded() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimension

getDownloaded() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

getDownloaded() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ProviderDimension

getDownloaded() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

getEncryptedPatientId() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

getEncryptedPatientId() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

getEncryptedPatientIdSource() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

getEncryptedPatientIdSource() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

getEndDate() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

getEndDate() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

getFactTableColumn() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getField(String, Proposition, Map<UniqueId, Proposition>) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.DimensionFactory

getFields() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitBlob

getFinish() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.DataSpec

getFinishConfig() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.FactHandler

getFolderSpecs() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Concepts

getFolderSpecs() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata

getFromConceptIdCache(List<Object>) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata

getFromIdCache(ConceptId) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata

getFromIdCache(String, String, Value) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata

getFullName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getFullName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

getGender() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

getGenderPropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getGenderPropertySource() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getGenderPropertyValueSet() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getGenderPropertyValueSetDelimiter() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getGenderPropertyValueSetDescriptionColumn() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getGenderPropertyValueSetDisplayNameColumn() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getGenderPropertyValueSetFile() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getGenderPropertyValueSetHasHeader() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getGenderPropertyValueSetIdColumn() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getGranularityFactory() - Method in class edu.emory.cci.aiw.i2b2etl.dsb.I2B2DataSourceBackend

getHierarchyPaths() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getHierarchyPaths() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

getId() - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2b2QueryResultsHandler

getId() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getId() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ConceptId

getId() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ModifierConceptId

getId() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ModifierParentConceptId

getId() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId

getId() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.SimpleConceptId

getId() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

getInOut() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

getInoutPropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getInoutPropertySource() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getInoutPropertyValueSet() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getInoutPropertyValueSetDelimiter() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getInoutPropertyValueSetDescriptionColumn() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getInoutPropertyValueSetDisplayNameColumn() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getInoutPropertyValueSetFile() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getInoutPropertyValueSetHasHeader() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getInoutPropertyValueSetIdColumn() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getInstance() - Static method in class edu.emory.cci.aiw.i2b2etl.dest.I2B2QueryResultsHandlerSourceId

getInstance(String, String, Value, Metadata) - Static method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ModifierConceptId

Returns a concept propId with the given proposition propId and property name and value.

getInstance(String, Metadata) - Static method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ModifierParentConceptId

Returns a concept propId with the given string identifier.

getInstance(String, String, Metadata) - Static method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId

Returns a concept propId with the given proposition propId and property name.

getInstance(String, String, Value, Metadata) - Static method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId

Returns a concept propId with the given proposition propId, property name and value.

getInstance(String, Metadata) - Static method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.SimpleConceptId

Returns a concept propId with the given string identifier.

getInstance(String, KnowledgeSourceCache, KnowledgeSource, PropositionDefinition[], FolderSpec[], Settings, Data, ConnectionSpec) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.MetadataFactory

getInstance(Date, Granularity, Date, Granularity) - Static method in class edu.emory.cci.aiw.i2b2etl.dest.table.ActiveStatusCode

Infer the correct active status code given what dates are available and whether or not the encounter information is finalized.

getInstance() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.IncrNumFactory

getInstance() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.table.NumFactory

getInstance(String, Proposition, Map<UniqueId, Proposition>) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimensionFactory

getInstance(Proposition, String, String, String, String, String, String, String, String, Map<UniqueId, Proposition>) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ProviderDimensionFactory

getInstance() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.RejectedFactHandlerFactory

getInstance(String, String, TemporalProposition, Map<UniqueId, Proposition>) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimensionFactory

getInstance(Boolean) - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.table.VitalStatusCode

getInstanceNum() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

getKey() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.DataSpec

getKeyType() - Method in class edu.emory.cci.aiw.i2b2etl.dsb.I2B2DataSourceBackend

getKnowledgeSourceSearchResults(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getLanguage() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

getLanguagePropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getLanguagePropertySource() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getLanguagePropertyValueSet() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getLanguagePropertyValueSetDelimiter() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getLanguagePropertyValueSetDescriptionColumn() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getLanguagePropertyValueSetDisplayNameColumn() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getLanguagePropertyValueSetFile() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getLanguagePropertyValueSetHasHeader() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getLanguagePropertyValueSetIdColumn() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getLengthOfStayInDays() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

getLevel() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getManageCTotalNum() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getMaritalStatus() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

getMaritalStatusPropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getMaritalStatusPropertySource() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getMaritalStatusPropertyValueSet() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getMaritalStatusPropertyValueSetDelimiter() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getMaritalStatusPropertyValueSetDescriptionColumn() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getMaritalStatusPropertyValueSetDisplayNameColumn() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getMaritalStatusPropertyValueSetFile() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getMaritalStatusPropertyValueSetHasHeader() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getMaritalStatusPropertyValueSetIdColumn() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getMergeOnUpdate() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getMetaConnectionSpec() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata

Returns connection information for the i2b2 metadata schema.

getMetadataSpec() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Database

getMetadataXml() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getMetadataXml() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

getMetaRemoveMethod() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getMetaTableName() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getModifierCd() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

getModifierRoots() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata

getModifiers() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.FolderSpec

getName() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Configuration

getName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.xml.XmlFileConfiguration

getNumberOfKeys() - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2b2Statistics

getOperator() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getOperator() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

Returns which operator will be used to query this concept ( EQUAL or LIKE).

getParent() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

getPasswd() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.DatabaseSpec

getPassword() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getPath() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptDimension

getPath() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimension

getPatient() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

getPatientDetailsDisplayName() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getPatientDetailsPatientIdPropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getPatientDetailsPropositionId() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getPatientDimensionBirthdate() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getPatientDimensionDeathDate() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getPatientDimensionGender() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getPatientDimensionLanguage() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getPatientDimensionMaritalStatus() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getPatientDimensionMRN() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getPatientDimensionRace() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getPatientDimensionReligion() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getPatientDimensionVital() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getPatientDimensionZipCode() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getPatientPatientIdPropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getPatientPropositionId() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getPhenotypeDefinitions() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata

getProperty() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.FolderSpec

getProperty() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.ModifierSpec

getPropertyBaseCode() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.ConceptProperty

getPropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.DataSpec

getPropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ModifierConceptId

getPropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId

getPropertyName() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropertyConceptId

getPropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.FactHandler

getPropositionId() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.ConceptProperty

getPropositions() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.FolderSpec

getProvider() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

getProviderDisplayName() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getProviderFirstName() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getProviderFullName() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getProviderLastName() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getProviderMiddleName() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getProviderNamePropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getProviderPropositionId() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getQueryResultsHandler(Query, DataSource, KnowledgeSource) - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2b2Destination

getRace() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

getRacePropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getRacePropertySource() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getRacePropertyValueSet() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getRacePropertyValueSetDelimiter() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getRacePropertyValueSetDescriptionColumn() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getRacePropertyValueSetDisplayNameColumn() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getRacePropertyValueSetFile() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getRacePropertyValueSetHasHeader() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getRacePropertyValueSetIdColumn() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getReferenceName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.DataSpec

getRejectionReasons() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getRejectionReasons() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.AbstractRecord

getRejectionReasons() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.table.Record

getReligion() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

getReligionPropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getReligionPropertySource() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getReligionPropertyValueSet() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getReligionPropertyValueSetDelimiter() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getReligionPropertyValueSetDescriptionColumn() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getReligionPropertyValueSetDisplayNameColumn() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getReligionPropertyValueSetFile() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getReligionPropertyValueSetHasHeader() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getReligionPropertyValueSetIdColumn() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getResultInstanceId() - Method in class edu.emory.cci.aiw.i2b2etl.dsb.I2B2DataSourceBackend

getRootNodeName() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getRoots() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.DemographicsBuilder

getRoots() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.metadata.SubtreeBuilder

getSelectedKeySetSpecs() - Method in class edu.emory.cci.aiw.i2b2etl.dsb.I2B2DataSourceBackend

getSettings() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Configuration

getSettings() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.SettingsSupport

getSettings() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.xml.XmlFileConfiguration

getSettings() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata

getSkipDemographicsHierarchy() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getSkipProviderHierarchy() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getSourceSystem() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.table.NumFactory

getSourceSystem() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

getSourceSystem() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

getSourceSystem() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ProviderDimension

Returns the source system of this provider, or null if it is not recorded.

getSourceSystemCode() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getSourceSystemCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getSourceSystemCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata

Returns the source system code used for concepts created by this query results handler.

getSourceSystemCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptDimension

getSourceSystemCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimension

getSourceSystemId() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

getSQLOperator() - Method in enum edu.emory.cci.aiw.i2b2etl.dest.metadata.ConceptOperator

getStart() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.DataSpec

getStartConfig() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.FactHandler

getStartDate() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

getStartDate() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

getStatistics() - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2b2Destination

getStringRepresentation() - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2B2QueryResultsHandlerSourceId

getSupportedPropositionIds(DataSource, KnowledgeSource) - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2b2Destination

getSymbol() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getSymbol() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

getSynonymCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getTableName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getTableName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.RejectedFactHandlerFactory

getTargetTable() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getToolTip() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getToolTip() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

getToolTipInt() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

getUnitFactory() - Method in class edu.emory.cci.aiw.i2b2etl.dsb.I2B2DataSourceBackend

getUnits() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.DataSpec

getUnits() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

getUnitsPropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.FactHandler

getUpdated() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getUpdated() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptDimension

getUpdated() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimension

getUpdated() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

getUpdated() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ProviderDimension

getUpdated() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

getUpdateDate() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

getUser() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.DatabaseSpec

getUsername() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getUserObject() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getValue() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.ModifierSpec

getValue() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ModifierConceptId

getValue() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId

getValue() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

getValueFlagCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

getValueType() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.FolderSpec

getValueTypeCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

getValueTypeCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

getVisit() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

getVisitAgePropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getVisitDimension() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getVisitDimensionId() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getVisitDimensionInOut() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.config.Settings

getVisitDisplayName() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getVisitId() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

getVisitIdSource() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

getVisitPropositionId() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getVisitSourceSystem() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

getVital() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

getVitalStatusPropertyName() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

getZip() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

H

handleFinishDate(Proposition, Proposition, Value) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.FactHandler

handleQueryResult(String, List<Proposition>, Map<Proposition, List<Proposition>>, Map<Proposition, List<Proposition>>, Map<UniqueId, Proposition>) - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2b2QueryResultsHandler

handleRecord(PatientDimension, VisitDimension, ProviderDimension, Proposition, Map<Proposition, List<Proposition>>, Map<Proposition, List<Proposition>>, Map<UniqueId, Proposition>, Set<Proposition>) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.FactHandler

handleRecord(PatientDimension, VisitDimension, ProviderDimension, Proposition, Map<Proposition, List<Proposition>>, Map<Proposition, List<Proposition>>, Map<UniqueId, Proposition>, Set<Proposition>) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler

handleStartDate(Proposition, Proposition, Value) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.FactHandler

handleUnits(Proposition) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.FactHandler

hashCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2B2QueryResultsHandlerSourceIdBuilder

hashCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ModifierConceptId

hashCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ModifierParentConceptId

hashCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId

hashCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.SimpleConceptId

I

I2B2DataSourceBackend - Class in edu.emory.cci.aiw.i2b2etl.dsb

I2B2DataSourceBackend() - Constructor for class edu.emory.cci.aiw.i2b2etl.dsb.I2B2DataSourceBackend

I2b2Destination - Class in edu.emory.cci.aiw.i2b2etl.dest

I2b2Destination(Configuration) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.I2b2Destination

Creates a new query results handler that will use the provided configuration file.

I2b2Destination(Configuration, boolean) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.I2b2Destination

Creates a new query results handler that will use the provided configuration file.

I2b2ETLUtil - Class in edu.emory.cci.aiw.i2b2etl.dest

I2b2ETLUtil() - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.I2b2ETLUtil

I2b2KnowledgeSourceBackend - Class in edu.emory.cci.aiw.i2b2etl.ksb

Implements using an i2b2 metadata schema to store proposition definitions.

I2b2KnowledgeSourceBackend() - Constructor for class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

I2b2QueryResultsHandler - Class in edu.emory.cci.aiw.i2b2etl.dest

I2B2QueryResultsHandlerSourceId - Class in edu.emory.cci.aiw.i2b2etl.dest

I2B2QueryResultsHandlerSourceIdBuilder - Class in edu.emory.cci.aiw.i2b2etl.dest

I2B2QueryResultsHandlerSourceIdBuilder() - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.I2B2QueryResultsHandlerSourceIdBuilder

I2b2Statistics - Class in edu.emory.cci.aiw.i2b2etl.dest

I2b2Statistics(Configuration) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.I2b2Statistics

importTimestamp() - Method in class edu.emory.cci.aiw.i2b2etl.util.RecordHandler

IncrNumFactory - Class in edu.emory.cci.aiw.i2b2etl.dest.table

IncrNumFactory() - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.IncrNumFactory

initialize(BackendInstanceSpec) - Method in class edu.emory.cci.aiw.i2b2etl.dsb.I2B2DataSourceBackend

initialize(BackendInstanceSpec) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

insert(ObservationFact) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.FactHandler

insert(E) - Method in class edu.emory.cci.aiw.i2b2etl.util.RecordHandler

InvalidConceptCodeException - Exception in edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid

InvalidFactException - Exception in edu.emory.cci.aiw.i2b2etl.dest.table

InvalidPatientRecordException - Exception in edu.emory.cci.aiw.i2b2etl.dest.table

InvalidPromoteArgumentException - Exception in edu.emory.cci.aiw.i2b2etl.dest.metadata

isAlreadyLoaded() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.FolderSpec

isAlreadyLoaded() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

isDerived() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

isDerived() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

isGetStatisticsSupported() - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2b2Destination

isInDataSource() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

Gets whether this concept should be queried with = or LIKE.

isInDataSource() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

Gets whether this concept should be queried with = or LIKE.

isInUse() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

isInUse() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

isModifier() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

isRejected() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

isRejected() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.AbstractRecord

isRejected() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.table.Record

L

loadConcept(Concept) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptDimensionLoader

loadConcept(Concept) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptHierarchyLoader

loadConcept(Concept) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.MetaTableConceptLoader

loadConcept(Concept) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimensionLoader

M

Metadata - Class in edu.emory.cci.aiw.i2b2etl.dest.metadata

Maintains the concepts for the data being loaded into i2b2.

MetadataFactory - Class in edu.emory.cci.aiw.i2b2etl.dest.metadata

MetadataFactory() - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.metadata.MetadataFactory

MetadataUtil - Class in edu.emory.cci.aiw.i2b2etl.dest.metadata

MetadataUtil() - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.metadata.MetadataUtil

MetaTableConceptHandler - Class in edu.emory.cci.aiw.i2b2etl.dest.table

MetaTableConceptHandler(ConnectionSpec, String) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.MetaTableConceptHandler

MetaTableConceptLoader - Class in edu.emory.cci.aiw.i2b2etl.dest.table

MetaTableConceptLoader(MetaTableConceptHandler) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.MetaTableConceptLoader

ModifierConceptId - Class in edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid

ModifierDimension - Class in edu.emory.cci.aiw.i2b2etl.dest.table

ModifierDimension() - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimension

ModifierDimensionHandler - Class in edu.emory.cci.aiw.i2b2etl.dest.table

ModifierDimensionHandler(ConnectionSpec) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimensionHandler

ModifierDimensionLoader - Class in edu.emory.cci.aiw.i2b2etl.dest.table

ModifierDimensionLoader(ModifierDimensionHandler) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimensionLoader

ModifierParentConceptId - Class in edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid

ModifierSpec - Class in edu.emory.cci.aiw.i2b2etl.dest.config

ModifierSpec(String, String, String, String) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.config.ModifierSpec

N

newConcept(ConceptId, String, String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata

NumFactory - Interface in edu.emory.cci.aiw.i2b2etl.dest.table

O

ObservationFact - Class in edu.emory.cci.aiw.i2b2etl.dest.table

ObservationFact() - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

OntologyBuildException - Exception in edu.emory.cci.aiw.i2b2etl.dest.metadata

OntologyBuildException(Throwable) - Constructor for exception edu.emory.cci.aiw.i2b2etl.dest.metadata.OntologyBuildException

OntologyBuildException(String, Throwable) - Constructor for exception edu.emory.cci.aiw.i2b2etl.dest.metadata.OntologyBuildException

OntologyBuildException(String) - Constructor for exception edu.emory.cci.aiw.i2b2etl.dest.metadata.OntologyBuildException

OntologyBuildException() - Constructor for exception edu.emory.cci.aiw.i2b2etl.dest.metadata.OntologyBuildException

P

ParameterSetter - Interface in edu.emory.cci.aiw.i2b2etl.ksb

parseDatabaseApi(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

Configures which Java database API to use (DriverManager or DataSource by parsing a DatabaseAPI's name.

parseGenderPropertyValueSet(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

parseInoutPropertyValueSet(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

parseLanguagePropertyValueSet(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

parseMaritalStatusPropertyValueSet(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

parseRacePropertyValueSet(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

parseReligionPropertyValueSet(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

PatientDimension - Class in edu.emory.cci.aiw.i2b2etl.dest.table

Represents records in the patient dimension.

PatientDimension() - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

PatientDimensionFactory - Class in edu.emory.cci.aiw.i2b2etl.dest.table

PatientDimensionFactory(Metadata, Settings, Data, ConnectionSpec) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimensionFactory

PatientDimensionHandler - Class in edu.emory.cci.aiw.i2b2etl.dest.table

PatientDimensionHandler(ConnectionSpec) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimensionHandler

PatientIdeStatusCode - Enum in edu.emory.cci.aiw.i2b2etl.dest.table

PatientMappingHandler - Class in edu.emory.cci.aiw.i2b2etl.dest.table

PatientMappingHandler(ConnectionSpec) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.PatientMappingHandler

populateObxFact(Proposition, Proposition, PatientDimension, VisitDimension, ProviderDimension, PropertyConceptId, ModifierConceptId) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.FactHandler

prepare() - Method in class edu.emory.cci.aiw.i2b2etl.ksb.QueryExecutor

primitiveParameterSpecs(String, String, String, String) - Method in class edu.emory.cci.aiw.i2b2etl.dsb.I2B2DataSourceBackend

PropDefConceptId - Class in edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid

An unique identifier for a concept in an i2b2 ontology.

PropertyConceptId - Interface in edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid

PropositionFactHandler - Class in edu.emory.cci.aiw.i2b2etl.dest.table

PropositionFactHandler(ConnectionSpec, Link[], String, String, String, String, String[], Metadata, KnowledgeSourceCache, RejectedFactHandlerFactory) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler

ProviderDimension - Class in edu.emory.cci.aiw.i2b2etl.dest.table

Represents records in the i2b2 provider dimension.

ProviderDimension() - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.ProviderDimension

ProviderDimensionFactory - Class in edu.emory.cci.aiw.i2b2etl.dest.table

ProviderDimensionFactory(Metadata, Settings, ConnectionSpec) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.ProviderDimensionFactory

ProviderDimensionHandler - Class in edu.emory.cci.aiw.i2b2etl.dest.table

ProviderDimensionHandler(ConnectionSpec) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.ProviderDimensionHandler

putInConceptIdCache(List<Object>, ConceptId) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Metadata

Q

QueryConstructor - Interface in edu.emory.cci.aiw.i2b2etl.ksb

QueryExecutor - Class in edu.emory.cci.aiw.i2b2etl.ksb

QueryExecutor(Connection, QueryConstructor, TableAccessReader) - Constructor for class edu.emory.cci.aiw.i2b2etl.ksb.QueryExecutor

QueryExecutor(Connection, QueryConstructor, String...) - Constructor for class edu.emory.cci.aiw.i2b2etl.ksb.QueryExecutor

R

read(ResultSet) - Method in interface edu.emory.cci.aiw.i2b2etl.ksb.ResultSetReader

read(Connection) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.TableAccessReader

readAbstractedInto(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

readAbstractionDefinition(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

readAbstractionDefinitions(String[]) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

readContextDefinition(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

readContextDefinitions(String[]) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

readInduces(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

readIsA(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

readPropositionDefinition(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

readPropositionDefinitions(String[]) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

readSubContextOfs(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

readTemporalPropositionDefinition(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

readTemporalPropositionDefinitions(String[]) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

readValueSet(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

Record - Interface in edu.emory.cci.aiw.i2b2etl.dest.table

RecordHandler<E> - Class in edu.emory.cci.aiw.i2b2etl.util

Inserts a record into a database using prepared statements in batch mode.

RecordHandler(Connection, String) - Constructor for class edu.emory.cci.aiw.i2b2etl.util.RecordHandler

RecordHandler(Connection, String, boolean) - Constructor for class edu.emory.cci.aiw.i2b2etl.util.RecordHandler

RecordHandler(ConnectionSpec, String) - Constructor for class edu.emory.cci.aiw.i2b2etl.util.RecordHandler

RecordHandlerCloseException - Exception in edu.emory.cci.aiw.i2b2etl.util

RecordHandlerCloseException() - Constructor for exception edu.emory.cci.aiw.i2b2etl.util.RecordHandlerCloseException

RecordHandlerCloseException(String, Throwable) - Constructor for exception edu.emory.cci.aiw.i2b2etl.util.RecordHandlerCloseException

RecordHandlerCloseException(String) - Constructor for exception edu.emory.cci.aiw.i2b2etl.util.RecordHandlerCloseException

RecordHandlerCloseException(Throwable) - Constructor for exception edu.emory.cci.aiw.i2b2etl.util.RecordHandlerCloseException

REJECTED_FACT_TABLE - Static variable in class edu.emory.cci.aiw.i2b2etl.dest.table.RejectedFactHandler

RejectedFactHandler - Class in edu.emory.cci.aiw.i2b2etl.dest.table

RejectedFactHandler(ConnectionSpec, String) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.RejectedFactHandler

RejectedFactHandlerFactory - Class in edu.emory.cci.aiw.i2b2etl.dest.table

RejectedFactHandlerFactory(ConnectionSpec, String) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.RejectedFactHandlerFactory

RemoveMethod - Enum in edu.emory.cci.aiw.i2b2etl.dest

reset() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.AbstractRecord

reset() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

ResultSetReader<E> - Interface in edu.emory.cci.aiw.i2b2etl.ksb

S

set(PreparedStatement, int) - Method in interface edu.emory.cci.aiw.i2b2etl.ksb.ParameterSetter

setActiveStatus(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

setAgeInYears(Long) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

setAgeInYearsPropertyName(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setAlreadyLoaded(boolean) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setAppliedPath(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setAppliedPath(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

setBirthDate(Date) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

setColumnName(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setComment(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setComment(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

setConcept(Concept) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

setConcept(Concept) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ProviderDimension

setConceptCode(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptDimension

setConceptCode(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimension

setCVisualAttributes(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setDatabaseApi(DatabaseAPI) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

Configures which Java database API to use (DriverManager or DataSource.

setDatabaseId(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setDataType(DataType) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setDataType(DataType) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

setDateAttribute(Date) - Static method in class edu.emory.cci.aiw.i2b2etl.dest.table.TableUtil

setDateOfBirthPropertyName(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setDateOfDeathPropertyName(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setDeathDate(Date) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

setDeleted(Timestamp) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ProviderDimension

setDeletedDate(Timestamp) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

setDeletedDate(Timestamp) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

setDeletedDate(Timestamp) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

setDerived(boolean) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setDerived(boolean) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

setDimCode(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setDisplayName(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setDisplayName(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

setDisplayName(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptDimension

setDisplayName(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimension

setDisplayName(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

setDownloadDate(Timestamp) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

setDownloaded(Date) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setDownloaded(Date) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

setDownloaded(Timestamp) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptDimension

setDownloaded(Timestamp) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimension

setDownloaded(Timestamp) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

setDownloaded(Timestamp) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ProviderDimension

setDownloaded(Timestamp) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

setEncryptedPatientId(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

setEncryptedPatientId(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

setEncryptedPatientIdSource(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

setEncryptedPatientIdSource(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

setEndDate(Timestamp) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

setEndDate(Date) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

setFactTableColumn(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setGender(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

setGenderPropertyName(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setGenderPropertySource(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setGenderPropertyValueSet(ValueSet) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setGenderPropertyValueSetDelimiter(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setGenderPropertyValueSetDescriptionColumn(Integer) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setGenderPropertyValueSetDisplayNameColumn(Integer) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setGenderPropertyValueSetFile(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setGenderPropertyValueSetHasHeader(Boolean) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setGenderPropertyValueSetIdColumn(Integer) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setInDataSource(boolean) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

Sets whether this concept should be queried with = or LIKE.

setInDataSource(boolean) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

Sets whether this concept should be queried with = or LIKE.

setInOut(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

setInoutPropertyName(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setInoutPropertySource(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setInoutPropertyValueSet(ValueSet) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setInoutPropertyValueSetDelimiter(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setInoutPropertyValueSetDescriptionColumn(Integer) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setInoutPropertyValueSetDisplayNameColumn(Integer) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setInoutPropertyValueSetFile(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setInoutPropertyValueSetHasHeader(Boolean) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setInoutPropertyValueSetIdColumn(Integer) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setInstanceNum(long) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

setInUse(boolean) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setInUse(boolean) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

setLanguage(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

setLanguagePropertyName(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setLanguagePropertySource(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setLanguagePropertyValueSet(ValueSet) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setLanguagePropertyValueSetDelimiter(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setLanguagePropertyValueSetDescriptionColumn(Integer) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setLanguagePropertyValueSetDisplayNameColumn(Integer) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setLanguagePropertyValueSetFile(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setLanguagePropertyValueSetHasHeader(Boolean) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setLanguagePropertyValueSetIdColumn(Integer) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setMaritalStatus(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

setMaritalStatusPropertyName(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setMaritalStatusPropertySource(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setMaritalStatusPropertyValueSet(ValueSet) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setMaritalStatusPropertyValueSetDelimiter(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setMaritalStatusPropertyValueSetDescriptionColumn(Integer) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setMaritalStatusPropertyValueSetDisplayNameColumn(Integer) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setMaritalStatusPropertyValueSetFile(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setMaritalStatusPropertyValueSetHasHeader(Boolean) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setMaritalStatusPropertyValueSetIdColumn(Integer) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setMetadataXml(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setMetadataXml(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

setModifierCd(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

setNullableStringAttribute(String, int) - Static method in class edu.emory.cci.aiw.i2b2etl.dest.table.TableUtil

setOperator(ConceptOperator) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setOperator(ConceptOperator) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

setParameters(PreparedStatement, ObservationFact) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.AbstractFactHandler

setParameters(PreparedStatement, ConceptDimension) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptDimensionHandler

setParameters(PreparedStatement, VisitDimension) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.EncounterMappingHandler

setParameters(PreparedStatement, Concept) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.MetaTableConceptHandler

setParameters(PreparedStatement, ModifierDimension) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimensionHandler

setParameters(PreparedStatement, PatientDimension) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimensionHandler

setParameters(PreparedStatement, PatientDimension) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientMappingHandler

setParameters(PreparedStatement, ProviderDimension) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ProviderDimensionHandler

setParameters(PreparedStatement, ObservationFact) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.RejectedFactHandler

setParameters(PreparedStatement, VisitDimension) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimensionHandler

setParameters(PreparedStatement, String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.UniqueIdTempTableHandler

setParameters(PreparedStatement, E) - Method in class edu.emory.cci.aiw.i2b2etl.util.RecordHandler

setPassword(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setPath(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptDimension

setPath(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimension

setPatient(PatientDimension) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

setPatientDetailsDisplayName(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setPatientDetailsPatientIdPropertyName(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setPatientDetailsPropositionId(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setPatientPatientIdPropertyName(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setPatientPropositionId(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setProvider(ProviderDimension) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

setProviderDisplayName(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setProviderNamePropertyName(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setProviderPropositionId(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setRace(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

setRacePropertyName(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setRacePropertySource(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setRacePropertyValueSet(ValueSet) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setRacePropertyValueSetDelimiter(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setRacePropertyValueSetDescriptionColumn(Integer) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setRacePropertyValueSetDisplayNameColumn(Integer) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setRacePropertyValueSetFile(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setRacePropertyValueSetHasHeader(Boolean) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setRacePropertyValueSetIdColumn(Integer) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setRejected(boolean) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setRejected(boolean) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.AbstractRecord

setReligion(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

setReligionPropertyName(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setReligionPropertySource(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setReligionPropertyValueSet(ValueSet) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setReligionPropertyValueSetDelimiter(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setReligionPropertyValueSetDescriptionColumn(Integer) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setReligionPropertyValueSetDisplayNameColumn(Integer) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setReligionPropertyValueSetFile(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setReligionPropertyValueSetHasHeader(Boolean) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setReligionPropertyValueSetIdColumn(Integer) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setResultInstanceId(Long) - Method in class edu.emory.cci.aiw.i2b2etl.dsb.I2B2DataSourceBackend

setSourceSystem(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

setSourceSystem(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

setSourceSystem(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ProviderDimension

setSourceSystemCode(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setSourceSystemCode(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptDimension

setSourceSystemCode(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimension

setSourceSystemId(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

setStartDate(Timestamp) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

setStartDate(Date) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

setStringAttribute(String, int) - Static method in class edu.emory.cci.aiw.i2b2etl.dest.table.TableUtil

setStringAttribute(String) - Static method in class edu.emory.cci.aiw.i2b2etl.dest.table.TableUtil

setSynonymCode(SynonymCode) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setTableName(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setTargetTable(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setTimestampAttribute(Date) - Static method in class edu.emory.cci.aiw.i2b2etl.dest.table.TableUtil

Settings - Interface in edu.emory.cci.aiw.i2b2etl.dest.config

SettingsSupport - Class in edu.emory.cci.aiw.i2b2etl.dest.config

SettingsSupport(Settings) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.config.SettingsSupport

setUnits(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

setUpdated(Date) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setUpdated(Timestamp) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptDimension

setUpdated(Timestamp) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimension

setUpdated(Timestamp) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

setUpdated(Timestamp) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ProviderDimension

setUpdated(Timestamp) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

setUpdateDate(Timestamp) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

setUsername(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setValue(Value) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

setValueFlagCode(ValueFlagCode) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

setValueTypeCode(ValueTypeCode) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

setValueTypeCode(ValueTypeCode) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

setVisit(VisitDimension) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

setVisitAgePropertyName(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setVisitDisplayName(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setVisitId(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

setVisitIdSource(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

setVisitPropositionId(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setVisitSourceSystem(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

setVital(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

setVitalStatusPropertyName(String) - Method in class edu.emory.cci.aiw.i2b2etl.ksb.I2b2KnowledgeSourceBackend

setZip(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

SimpleConceptId - Class in edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid

stagedSpecs(String, String, String, String) - Method in class edu.emory.cci.aiw.i2b2etl.dsb.I2B2DataSourceBackend

start(Collection<PropositionDefinition>) - Method in class edu.emory.cci.aiw.i2b2etl.dest.I2b2QueryResultsHandler

Builds most of the concept tree, truncates the data tables, opens a connection to the i2b2 project database, and does some other prep.

SubtreeBuilder - Interface in edu.emory.cci.aiw.i2b2etl.dest.metadata

SynonymCode - Enum in edu.emory.cci.aiw.i2b2etl.dest.metadata

T

TableAccessReader - Class in edu.emory.cci.aiw.i2b2etl.ksb

Queries an i2b2 metadata schema for all of the tables in TABLE_ACCESS that have a EK_UNIQUE_ID column (note case!) and thus are an Eureka metadata table.

TableAccessReader(String) - Constructor for class edu.emory.cci.aiw.i2b2etl.ksb.TableAccessReader

TableUtil - Class in edu.emory.cci.aiw.i2b2etl.dest.table

TEMP_CONCEPT_TABLE - Static variable in class edu.emory.cci.aiw.i2b2etl.dest.table.ConceptDimensionHandler

TEMP_ENC_MAPPING_TABLE - Static variable in class edu.emory.cci.aiw.i2b2etl.dest.table.EncounterMappingHandler

TEMP_MODIFIER_TABLE - Static variable in class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimensionHandler

TEMP_OBSERVATION_COMPLETE_TABLE - Static variable in class edu.emory.cci.aiw.i2b2etl.dest.table.FactHandler

TEMP_OBSERVATION_TABLE - Static variable in class edu.emory.cci.aiw.i2b2etl.dest.table.FactHandler

TEMP_PATIENT_MAPPING_TABLE - Static variable in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientMappingHandler

TEMP_PATIENT_TABLE - Static variable in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimensionHandler

TEMP_PROVIDER_TABLE - Static variable in class edu.emory.cci.aiw.i2b2etl.dest.table.ProviderDimensionHandler

TEMP_VISIT_TABLE - Static variable in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimensionHandler

toConceptCode() - Method in interface edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ConceptId

toConceptCode(String) - Method in interface edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ConceptId

toConceptCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ModifierConceptId

toConceptCode(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ModifierConceptId

toConceptCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ModifierParentConceptId

toConceptCode(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ModifierParentConceptId

toConceptCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId

toConceptCode(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId

toConceptCode() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.SimpleConceptId

toConceptCode(String) - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.SimpleConceptId

toConnectionSpec() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.DatabaseSpec

Gets a connection spec configured with the user, password and connection string specified.

toSourceSystemCode(String) - Static method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.MetadataUtil

toString() - Method in class edu.emory.cci.aiw.i2b2etl.dest.config.ModifierSpec

toString() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.Concept

toString() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ModifierConceptId

toString() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.ModifierParentConceptId

toString() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.PropDefConceptId

toString() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.conceptid.SimpleConceptId

toString() - Method in class edu.emory.cci.aiw.i2b2etl.dest.metadata.UserObject

toString() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ModifierDimension

toString() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ObservationFact

toString() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PatientDimension

toString() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.PropositionFactHandler

toString() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.ProviderDimension

toString() - Method in class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

toString(Value) - Static method in class edu.emory.cci.aiw.i2b2etl.util.CodeUtil

truncateCodeStringIfNeeded(String) - Static method in class edu.emory.cci.aiw.i2b2etl.util.CodeUtil

U

UniqueIdTempTableHandler - Class in edu.emory.cci.aiw.i2b2etl.ksb

UniqueIdTempTableHandler(DatabaseProduct, Connection) - Constructor for class edu.emory.cci.aiw.i2b2etl.ksb.UniqueIdTempTableHandler

UniqueIdTempTableHandler(DatabaseProduct, Connection, boolean) - Constructor for class edu.emory.cci.aiw.i2b2etl.ksb.UniqueIdTempTableHandler

UnknownPropositionDefinitionException - Exception in edu.emory.cci.aiw.i2b2etl.dest.metadata

UnknownPropositionDefinitionException(Throwable) - Constructor for exception edu.emory.cci.aiw.i2b2etl.dest.metadata.UnknownPropositionDefinitionException

UnknownPropositionDefinitionException(Proposition) - Constructor for exception edu.emory.cci.aiw.i2b2etl.dest.metadata.UnknownPropositionDefinitionException

UnknownPropositionDefinitionException(String, Throwable) - Constructor for exception edu.emory.cci.aiw.i2b2etl.dest.metadata.UnknownPropositionDefinitionException

UnknownPropositionDefinitionException(String) - Constructor for exception edu.emory.cci.aiw.i2b2etl.dest.metadata.UnknownPropositionDefinitionException

UserObject - Class in edu.emory.cci.aiw.i2b2etl.dest.metadata

Util - Class in edu.emory.cci.aiw.i2b2etl.util

Util() - Constructor for class edu.emory.cci.aiw.i2b2etl.util.Util

V

ValueFlagCode - Enum in edu.emory.cci.aiw.i2b2etl.dest.table

Represents the possible values of the VALUEFLAG_CD attribute of the OBSERVATION_FACT table.

valueOf(String) - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.metadata.ConceptOperator

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.metadata.DataType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.metadata.SynonymCode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.metadata.ValueTypeCode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.RemoveMethod

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.table.ActiveStatusCodeEndDate

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.table.ActiveStatusCodeStartDate

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.table.EncounterIdeStatusCode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.table.PatientIdeStatusCode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.table.ValueFlagCode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.table.VitalStatusCode

Returns the enum constant of this type with the specified name.

values() - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.metadata.ConceptOperator

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.metadata.DataType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.metadata.SynonymCode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.metadata.ValueTypeCode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.RemoveMethod

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.table.ActiveStatusCodeEndDate

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.table.ActiveStatusCodeStartDate

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.table.EncounterIdeStatusCode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.table.PatientIdeStatusCode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.table.ValueFlagCode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.i2b2etl.dest.table.VitalStatusCode

Returns an array containing the constants of this enum type, in the order they are declared.

ValueTypeCode - Enum in edu.emory.cci.aiw.i2b2etl.dest.metadata

VisitBlob - Class in edu.emory.cci.aiw.i2b2etl.dest.table

VisitBlob() - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.VisitBlob

VisitDimension - Class in edu.emory.cci.aiw.i2b2etl.dest.table

VisitDimension() - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimension

VisitDimensionFactory - Class in edu.emory.cci.aiw.i2b2etl.dest.table

VisitDimensionFactory(Metadata, Settings, Data, ConnectionSpec) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimensionFactory

VisitDimensionHandler - Class in edu.emory.cci.aiw.i2b2etl.dest.table

VisitDimensionHandler(ConnectionSpec) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.table.VisitDimensionHandler

VitalStatusCode - Enum in edu.emory.cci.aiw.i2b2etl.dest.table

Represents the possible values of the VITAL_STATUS_CD attribute in the PATIENT_DIMENSION table.

X

XmlFileConfiguration - Class in edu.emory.cci.aiw.i2b2etl.dest.config.xml

XmlFileConfiguration(File) - Constructor for class edu.emory.cci.aiw.i2b2etl.dest.config.xml.XmlFileConfiguration

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