edu.emory.cci.aiw.dsb.mimicii

Class MIMIC2v26DataSourceBackend

java.lang.Object

org.protempa.backend.AbstractBackend<org.protempa.backend.DataSourceBackendUpdatedEvent>

org.protempa.backend.dsb.AbstractDataSourceBackend

org.protempa.backend.AbstractCommonsDataSourceBackend

org.protempa.backend.dsb.relationaldb.RelationalDbDataSourceBackend

edu.emory.cci.aiw.dsb.mimicii.MIMIC2v26DataSourceBackend

All Implemented Interfaces:

org.protempa.backend.Backend<org.protempa.backend.DataSourceBackendUpdatedEvent>, org.protempa.backend.dsb.DataSourceBackend

public class MIMIC2v26DataSourceBackend
extends org.protempa.backend.dsb.relationaldb.RelationalDbDataSourceBackend

Author:

Andrew Post

Field Summary

Fields inherited from class org.protempa.backend.dsb.relationaldb.RelationalDbDataSourceBackend

username

Constructor Summary

Constructors

Constructor and Description
MIMIC2v26DataSourceBackend()

Method Summary

Modifier and Type	Method and Description
protected org.protempa.backend.dsb.relationaldb.EntitySpec[]	constantSpecs(String keyIdSchema, String keyIdTable, String keyIdColumn, String keyIdJoinKey)
protected org.protempa.backend.dsb.relationaldb.EntitySpec[]	eventSpecs(String keyIdSchema, String keyIdTable, String keyIdColumn, String keyIdJoinKey)
String	getKeyType()
String	getKeyTypeDisplayName()
protected org.protempa.backend.dsb.relationaldb.EntitySpec[]	primitiveParameterSpecs(String keyIdSchema, String keyIdTable, String keyIdColumn, String keyIdJoinKey)
protected org.protempa.backend.dsb.relationaldb.StagingSpec[]	stagedSpecs(String keyIdSchema, String keyIdTable, String keyIdColumn, String keyIdJoinKey)

Methods inherited from class org.protempa.backend.dsb.relationaldb.RelationalDbDataSourceBackend

close, deleteAllKeys, getConnectionSpecInstance, getDatabaseAPI, getDatabaseId, getDefaultKeyIdColumn, getDefaultKeyIdJoinKey, getDefaultKeyIdTable, getKeyLoaderKeyIdColumn, getKeyLoaderKeyIdJoinKey, getKeyLoaderKeyIdSchema, getKeyLoaderKeyIdTable, getMappingsFactory, getPassword, getQueryThreadCount, getQueryTimeout, getSchemaName, getSelectedKeySetSpecs, getUsername, initialize, isDryRun, isInKeySetMode, parseDatabaseAPI, parseDryRun, parseMappingsFactory, readPropositions, setDatabaseAPI, setDatabaseId, setDefaultKeyIdColumn, setDefaultKeyIdJoinKey, setDefaultKeyIdTable, setDryRun, setKeyLoaderKeyIdColumn, setKeyLoaderKeyIdJoinKey, setKeyLoaderKeyIdSchema, setKeyLoaderKeyIdTable, setMappingsFactory, setPassword, setQueryThreadCount, setQueryTimeout, setSchemaName, setUsername, validateConfiguration, validateData, writeKeys

Methods inherited from class org.protempa.backend.AbstractCommonsDataSourceBackend

getDataSourceBackendId, getDisplayName, getId, nameForErrors, parseGranularityFactory, parseUnitFactory, setDataSourceBackendId, setId, setKeyType

Methods inherited from class org.protempa.backend.dsb.AbstractDataSourceBackend

getGranularityFactory, getKeyIdComparator, getKeyTypePluralDisplayName, getSourceSystem, getUnitFactory, setGranularityFactory, setKeyIdComparator, setUnitFactory

Methods inherited from class org.protempa.backend.AbstractBackend

addBackendListener, fireBackendUpdated, fireUnrecoverableError, getConfigurationsId, removeBackendListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.protempa.backend.Backend

addBackendListener, getConfigurationsId, removeBackendListener

Constructor Detail

MIMIC2v26DataSourceBackend

public MIMIC2v26DataSourceBackend()

Method Detail

constantSpecs

protected org.protempa.backend.dsb.relationaldb.EntitySpec[] constantSpecs(String keyIdSchema,
                                                                           String keyIdTable,
                                                                           String keyIdColumn,
                                                                           String keyIdJoinKey)
                                                                    throws IOException

Specified by:

constantSpecs in class org.protempa.backend.dsb.relationaldb.RelationalDbDataSourceBackend

Throws:

IOException

eventSpecs

protected org.protempa.backend.dsb.relationaldb.EntitySpec[] eventSpecs(String keyIdSchema,
                                                                        String keyIdTable,
                                                                        String keyIdColumn,
                                                                        String keyIdJoinKey)
                                                                 throws IOException

Specified by:

eventSpecs in class org.protempa.backend.dsb.relationaldb.RelationalDbDataSourceBackend

Throws:

IOException

primitiveParameterSpecs

protected org.protempa.backend.dsb.relationaldb.EntitySpec[] primitiveParameterSpecs(String keyIdSchema,
                                                                                     String keyIdTable,
                                                                                     String keyIdColumn,
                                                                                     String keyIdJoinKey)
                                                                              throws IOException

Specified by:

primitiveParameterSpecs in class org.protempa.backend.dsb.relationaldb.RelationalDbDataSourceBackend

Throws:

IOException

stagedSpecs

protected org.protempa.backend.dsb.relationaldb.StagingSpec[] stagedSpecs(String keyIdSchema,
                                                                          String keyIdTable,
                                                                          String keyIdColumn,
                                                                          String keyIdJoinKey)
                                                                   throws IOException

Specified by:

stagedSpecs in class org.protempa.backend.dsb.relationaldb.RelationalDbDataSourceBackend

Throws:

IOException

getKeyType

public String getKeyType()

Specified by:

getKeyType in interface org.protempa.backend.dsb.DataSourceBackend

Overrides:

getKeyType in class org.protempa.backend.AbstractCommonsDataSourceBackend

getKeyTypeDisplayName

public String getKeyTypeDisplayName()

Specified by:

getKeyTypeDisplayName in interface org.protempa.backend.dsb.DataSourceBackend

Overrides:

getKeyTypeDisplayName in class org.protempa.backend.dsb.AbstractDataSourceBackend