org.eurekaclinical.eureka.client

Class EurekaClient

java.lang.Object

org.eurekaclinical.common.comm.clients.EurekaClinicalClient

org.eurekaclinical.common.comm.clients.AuthorizingEurekaClinicalClient

org.eurekaclinical.eureka.client.EurekaClient

All Implemented Interfaces:

AutoCloseable

public class EurekaClient
extends org.eurekaclinical.common.comm.clients.AuthorizingEurekaClinicalClient

Author:

Andrew Post

Constructor Summary

Constructors

Constructor and Description
EurekaClient(String inEurekaUrl)

Method Summary

Modifier and Type	Method and Description
Long	createDestination(Destination destination)
void	deleteDestination(Long id, String destinationId)
void	deleteUserPhenotype(Long inUserId, Long inId)
List<CohortDestination>	getCohortDestinations()
Destination	getDestination(String destinationId)
List<Destination>	getDestinations()
List<I2B2Destination>	getI2B2Destinations()
Job	getJob(Long jobId)
List<Job>	getJobs()
List<Job>	getJobsDesc()
Statistics	getJobStats(Long jobId, String propId)
List<Job>	getLatestJob()
InputStream	getOutput(String destinationId)
List<Phenotype>	getPhenotypes(String[] inKeys, boolean summarized)
protected URI	getResourceUrl()
SourceConfig	getSourceConfig(String sourceConfigId)
List<SourceConfigParams>	getSourceConfigParams()
List<SourceConfig>	getSourceConfigs()
SystemPhenotype	getSystemPhenotype(String inKey, boolean summarize)
List<SystemPhenotype>	getSystemPhenotypes()
List<SystemPhenotype>	getSystemPhenotypes(List<String> inKeys, boolean summarize)
List<String>	getSystemPhenotypeSearchResults(String searchKey)
List<SystemPhenotype>	getSystemPhenotypeSearchResultsBySearchKey(String searchKey)
Phenotype	getUserPhenotype(String inKey, boolean summarized)
List<Phenotype>	getUserPhenotypes(boolean summarized)
URI	saveUserPhenotype(Phenotype inPhenotype)
Long	submitJob(JobSpec inUpload)
void	updateDestination(Destination destination)
void	updateUser(org.eurekaclinical.common.comm.User inUser, Long userId)
void	updateUserPhenotype(Long inId, Phenotype inPhenotype)
void	upload(String fileName, String sourceId, String fileTypeId, InputStream inputStream)

Methods inherited from class org.eurekaclinical.common.comm.clients.AuthorizingEurekaClinicalClient

getMe, getRole, getRoleByName, getRoles, getUserById, getUsers

Methods inherited from class org.eurekaclinical.common.comm.clients.EurekaClinicalClient

close, doDelete, doDelete, doDeleteForProxy, doGet, doGet, doGet, doGet, doGet, doGet, doGet, doGet, doGetForProxy, doGetResponse, doGetResponse, doPost, doPost, doPost, doPost, doPost, doPost, doPost, doPostCreate, doPostCreate, doPostCreateMultipart, doPostCreateMultipart, doPostCreateMultipart, doPostForm, doPostForm, doPostForProxy, doPostMultipart, doPostMultipart, doPostMultipart, doPostMultipart, doPut, doPut, doPut, doPutForProxy, errorIfStatusEqualTo, errorIfStatusNotEqualTo, extractId

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EurekaClient

public EurekaClient(String inEurekaUrl)

Method Detail

getResourceUrl

protected URI getResourceUrl()

Specified by:

getResourceUrl in class org.eurekaclinical.common.comm.clients.EurekaClinicalClient

updateUser

public void updateUser(org.eurekaclinical.common.comm.User inUser,
                       Long userId)
                throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

submitJob

public Long submitJob(JobSpec inUpload)
               throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

upload

public void upload(String fileName,
                   String sourceId,
                   String fileTypeId,
                   InputStream inputStream)
            throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getJob

public Job getJob(Long jobId)
           throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getJobStats

public Statistics getJobStats(Long jobId,
                              String propId)
                       throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getJobs

public List<Job> getJobs()
                  throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getJobsDesc

public List<Job> getJobsDesc()
                      throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getLatestJob

public List<Job> getLatestJob()
                       throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getPhenotypes

public List<Phenotype> getPhenotypes(String[] inKeys,
                                     boolean summarized)
                              throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getUserPhenotypes

public List<Phenotype> getUserPhenotypes(boolean summarized)
                                  throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getUserPhenotype

public Phenotype getUserPhenotype(String inKey,
                                  boolean summarized)
                           throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

saveUserPhenotype

public URI saveUserPhenotype(Phenotype inPhenotype)
                      throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

updateUserPhenotype

public void updateUserPhenotype(Long inId,
                                Phenotype inPhenotype)
                         throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

deleteUserPhenotype

public void deleteUserPhenotype(Long inUserId,
                                Long inId)
                         throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getSystemPhenotypes

public List<SystemPhenotype> getSystemPhenotypes()
                                          throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getSystemPhenotypes

public List<SystemPhenotype> getSystemPhenotypes(List<String> inKeys,
                                                 boolean summarize)
                                          throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getSystemPhenotype

public SystemPhenotype getSystemPhenotype(String inKey,
                                          boolean summarize)
                                   throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getSourceConfigs

public List<SourceConfig> getSourceConfigs()
                                    throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getSourceConfig

public SourceConfig getSourceConfig(String sourceConfigId)
                             throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getSourceConfigParams

public List<SourceConfigParams> getSourceConfigParams()
                                               throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

createDestination

public Long createDestination(Destination destination)
                       throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

updateDestination

public void updateDestination(Destination destination)
                       throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getDestinations

public List<Destination> getDestinations()
                                  throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getCohortDestinations

public List<CohortDestination> getCohortDestinations()
                                              throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getI2B2Destinations

public List<I2B2Destination> getI2B2Destinations()
                                          throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getDestination

public Destination getDestination(String destinationId)
                           throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

deleteDestination

public void deleteDestination(Long id,
                              String destinationId)
                       throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getSystemPhenotypeSearchResults

public List<String> getSystemPhenotypeSearchResults(String searchKey)
                                             throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getSystemPhenotypeSearchResultsBySearchKey

public List<SystemPhenotype> getSystemPhenotypeSearchResultsBySearchKey(String searchKey)
                                                                 throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException

getOutput

public InputStream getOutput(String destinationId)
                      throws org.eurekaclinical.common.comm.clients.ClientException

Throws:

org.eurekaclinical.common.comm.clients.ClientException