edu.emory.cci.aiw.cvrg.eureka.common.comm.clients

Class ServicesClient

java.lang.Object

edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.AbstractClient

edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

public class ServicesClient
extends EurekaClient

Author:

hrathod

Constructor Summary

Constructors

Constructor and Description
ServicesClient(String inServicesUrl)

Method Summary

Modifier and Type	Method and Description
void	addUser(UserRequest inRequest)
void	changePassword(String inOldPass, String inNewPass)
URI	createDestination(Destination destination)
void	deleteDestination(Long id, String destinationId)
void	deleteUserPhenotype(Long inUserId, Long inId)
List<CohortDestination>	getCohortDestinations()
Destination	getDestination(String destinationId)
List<Destination>	getDestinations()
List<FrequencyType>	getFrequencyTypesAsc()
List<I2B2Destination>	getI2B2Destinations()
Job	getJob(Long jobId)
List<Job>	getJobs()
List<Job>	getJobsDesc()
Statistics	getJobStats(Long jobId, String propId)
User	getMe()
OAuthProvider	getOAuthProvider(Long inId)
OAuthProvider	getOAuthProviderByName(String inName)
InputStream	getOutput(String destinationId)
List<Phenotype>	getPhenotypes(String[] inKeys, boolean summarized)
RelationOperator	getRelationOperator(Long inId)
RelationOperator	getRelationOperatorByName(String inName)
List<RelationOperator>	getRelationOperatorsAsc()
protected String	getResourceUrl()
Role	getRole(Long inRoleId)
List<Role>	getRoles()
SourceConfig	getSourceConfig(String sourceConfigId)
List<SourceConfigParams>	getSourceConfigParams()
List<SourceConfig>	getSourceConfigs()
SystemPhenotype	getSystemPhenotype(String inKey, boolean summarize)
List<SystemPhenotype>	getSystemPhenotypes()
List<SystemPhenotype>	getSystemPhenotypes(List<String> inKeys, boolean summarize)
List<String>	getSystemPhenotypeSearchResults(String searchKey)
List<SystemPhenotype>	getSystemPhenotypeSearchResultsBySearchKey(String searchKey)
ThresholdsOperator	getThresholdsOperator(Long inId)
ThresholdsOperator	getThresholdsOperatorByName(String inName)
List<ThresholdsOperator>	getThresholdsOperators()
TimeUnit	getTimeUnit(Long inId)
TimeUnit	getTimeUnitByName(String inName)
List<TimeUnit>	getTimeUnitsAsc()
User	getUserById(Long inUserId)
Phenotype	getUserPhenotype(String inKey, boolean summarized)
List<Phenotype>	getUserPhenotypes(boolean summarized)
List<User>	getUsers()
ValueComparator	getValueComparator(Long inId)
ValueComparator	getValueComparatorByName(String inName)
List<ValueComparator>	getValueComparatorsAsc()
void	proxyDelete(String path)
String	proxyGet(String path, javax.ws.rs.core.MultivaluedMap queryParams)
URI	proxyPost(String path, String json)
void	proxyPut(String path, String json)
void	resetPassword(String username)
URI	saveUserPhenotype(Phenotype inPhenotype)
URI	submitJob(JobSpec inUpload)
void	updateDestination(Destination destination)
void	updateUser(User inUser, Long userId)
void	updateUserPhenotype(Long inId, Phenotype inPhenotype)
void	upload(String fileName, String sourceId, String fileTypeId, InputStream inputStream)
void	verifyUser(String inCode)

Methods inherited from class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

doDelete, doDelete, doGet, doGet, doGet, doGet, doGet, doGet, doGetResponse, doPost, doPost, doPost, doPost, doPost, doPostCreate, doPostMultipart, doPut, doPut, errorIfStatusEqualTo, errorIfStatusNotEqualTo, extractId, getResourceWrapper

Methods inherited from class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.AbstractClient

getResource, getRestClient

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ServicesClient

public ServicesClient(String inServicesUrl)

Method Detail

getResourceUrl

protected String getResourceUrl()

Specified by:

getResourceUrl in class AbstractClient

getUsers

public List<User> getUsers()
                    throws ClientException

Throws:

ClientException

getMe

public User getMe()
           throws ClientException

Throws:

ClientException

getUserById

public User getUserById(Long inUserId)
                 throws ClientException

Throws:

ClientException

addUser

public void addUser(UserRequest inRequest)
             throws ClientException

Throws:

ClientException

resetPassword

public void resetPassword(String username)
                   throws ClientException

Throws:

ClientException

verifyUser

public void verifyUser(String inCode)
                throws ClientException

Throws:

ClientException

changePassword

public void changePassword(String inOldPass,
                           String inNewPass)
                    throws ClientException

Throws:

ClientException

updateUser

public void updateUser(User inUser,
                       Long userId)
                throws ClientException

Throws:

ClientException

getRoles

public List<Role> getRoles()
                    throws ClientException

Throws:

ClientException

getRole

public Role getRole(Long inRoleId)
             throws ClientException

Throws:

ClientException

submitJob

public URI submitJob(JobSpec inUpload)
              throws ClientException

Throws:

ClientException

upload

public void upload(String fileName,
                   String sourceId,
                   String fileTypeId,
                   InputStream inputStream)
            throws ClientException

Throws:

ClientException

getJob

public Job getJob(Long jobId)
           throws ClientException

Throws:

ClientException

getJobStats

public Statistics getJobStats(Long jobId,
                              String propId)
                       throws ClientException

Throws:

ClientException

getJobs

public List<Job> getJobs()
                  throws ClientException

Throws:

ClientException

getJobsDesc

public List<Job> getJobsDesc()
                      throws ClientException

Throws:

ClientException

getPhenotypes

public List<Phenotype> getPhenotypes(String[] inKeys,
                                     boolean summarized)
                              throws ClientException

Throws:

ClientException

proxyPost

public URI proxyPost(String path,
                     String json)
              throws ClientException

Throws:

ClientException

proxyDelete

public void proxyDelete(String path)
                 throws ClientException

Throws:

ClientException

proxyPut

public void proxyPut(String path,
                     String json)
              throws ClientException

Throws:

ClientException

proxyGet

public String proxyGet(String path,
                       javax.ws.rs.core.MultivaluedMap queryParams)
                throws ClientException

Throws:

ClientException

getUserPhenotypes

public List<Phenotype> getUserPhenotypes(boolean summarized)
                                  throws ClientException

Throws:

ClientException

getUserPhenotype

public Phenotype getUserPhenotype(String inKey,
                                  boolean summarized)
                           throws ClientException

Throws:

ClientException

saveUserPhenotype

public URI saveUserPhenotype(Phenotype inPhenotype)
                      throws ClientException

Throws:

ClientException

updateUserPhenotype

public void updateUserPhenotype(Long inId,
                                Phenotype inPhenotype)
                         throws ClientException

Throws:

ClientException

deleteUserPhenotype

public void deleteUserPhenotype(Long inUserId,
                                Long inId)
                         throws ClientException

Throws:

ClientException

getSystemPhenotypes

public List<SystemPhenotype> getSystemPhenotypes()
                                          throws ClientException

Throws:

ClientException

getSystemPhenotypes

public List<SystemPhenotype> getSystemPhenotypes(List<String> inKeys,
                                                 boolean summarize)
                                          throws ClientException

Throws:

ClientException

getSystemPhenotype

public SystemPhenotype getSystemPhenotype(String inKey,
                                          boolean summarize)
                                   throws ClientException

Throws:

ClientException

getTimeUnitsAsc

public List<TimeUnit> getTimeUnitsAsc()
                               throws ClientException

Throws:

ClientException

getTimeUnit

public TimeUnit getTimeUnit(Long inId)
                     throws ClientException

Throws:

ClientException

getTimeUnitByName

public TimeUnit getTimeUnitByName(String inName)
                           throws ClientException

Throws:

ClientException

getRelationOperatorsAsc

public List<RelationOperator> getRelationOperatorsAsc()
                                               throws ClientException

Throws:

ClientException

getRelationOperator

public RelationOperator getRelationOperator(Long inId)
                                     throws ClientException

Throws:

ClientException

getRelationOperatorByName

public RelationOperator getRelationOperatorByName(String inName)
                                           throws ClientException

Throws:

ClientException

getOAuthProvider

public OAuthProvider getOAuthProvider(Long inId)
                               throws ClientException

Throws:

ClientException

getOAuthProviderByName

public OAuthProvider getOAuthProviderByName(String inName)
                                     throws ClientException

Throws:

ClientException

getThresholdsOperators

public List<ThresholdsOperator> getThresholdsOperators()
                                                throws ClientException

Throws:

ClientException

getThresholdsOperator

public ThresholdsOperator getThresholdsOperator(Long inId)
                                         throws ClientException

Throws:

ClientException

getThresholdsOperatorByName

public ThresholdsOperator getThresholdsOperatorByName(String inName)
                                               throws ClientException

Throws:

ClientException

getValueComparatorsAsc

public List<ValueComparator> getValueComparatorsAsc()
                                             throws ClientException

Throws:

ClientException

getValueComparator

public ValueComparator getValueComparator(Long inId)
                                   throws ClientException

Throws:

ClientException

getValueComparatorByName

public ValueComparator getValueComparatorByName(String inName)
                                         throws ClientException

Throws:

ClientException

getFrequencyTypesAsc

public List<FrequencyType> getFrequencyTypesAsc()
                                         throws ClientException

Throws:

ClientException

getSourceConfigs

public List<SourceConfig> getSourceConfigs()
                                    throws ClientException

Throws:

ClientException

getSourceConfig

public SourceConfig getSourceConfig(String sourceConfigId)
                             throws ClientException

Throws:

ClientException

getSourceConfigParams

public List<SourceConfigParams> getSourceConfigParams()
                                               throws ClientException

Throws:

ClientException

createDestination

public URI createDestination(Destination destination)
                      throws ClientException

Throws:

ClientException

updateDestination

public void updateDestination(Destination destination)
                       throws ClientException

Throws:

ClientException

getDestinations

public List<Destination> getDestinations()
                                  throws ClientException

Throws:

ClientException

getCohortDestinations

public List<CohortDestination> getCohortDestinations()
                                              throws ClientException

Throws:

ClientException

getI2B2Destinations

public List<I2B2Destination> getI2B2Destinations()
                                          throws ClientException

Throws:

ClientException

getDestination

public Destination getDestination(String destinationId)
                           throws ClientException

Throws:

ClientException

deleteDestination

public void deleteDestination(Long id,
                              String destinationId)
                       throws ClientException

Throws:

ClientException

getSystemPhenotypeSearchResults

public List<String> getSystemPhenotypeSearchResults(String searchKey)
                                             throws ClientException

Throws:

ClientException

getSystemPhenotypeSearchResultsBySearchKey

public List<SystemPhenotype> getSystemPhenotypeSearchResultsBySearchKey(String searchKey)
                                                                 throws ClientException

Throws:

ClientException

getOutput

public InputStream getOutput(String destinationId)
                      throws ClientException

Throws:

ClientException