A B C D E F G H I J K L M N O P R S T U V W Z

A

AbsoluteTimeUnitMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

AbsoluteTimeUnitMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.AbsoluteTimeUnitMixin

AbstractClient - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm.clients

AbstractClient() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.AbstractClient

AbstractDestinationVisitor - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

AbstractDestinationVisitor() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.AbstractDestinationVisitor

abstractedFrom - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity_

AbstractEtlDestinationVisitor - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

AbstractEtlDestinationVisitor() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.AbstractEtlDestinationVisitor

AbstractJerseyServletModule - Class in edu.emory.cci.aiw.cvrg.eureka.common.config

Extend to setup Eureka RESTful web services.

AbstractJerseyServletModule(AbstractProperties, String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.config.AbstractJerseyServletModule

AbstractJerseyServletModuleWithPersist - Class in edu.emory.cci.aiw.cvrg.eureka.common.config

Extend to setup Eureka RESTful web services.

AbstractJerseyServletModuleWithPersist(AbstractProperties, String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.config.AbstractJerseyServletModuleWithPersist

AbstractNodeVisitor - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

AbstractNodeVisitor() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.AbstractNodeVisitor

AbstractPhenotypeEntityVisitor - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

AbstractPhenotypeEntityVisitor() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.AbstractPhenotypeEntityVisitor

AbstractProperties - Class in edu.emory.cci.aiw.cvrg.eureka.common.props

AbstractProperties() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

Loads the application configuration.

AbstractServletModule - Class in edu.emory.cci.aiw.cvrg.eureka.common.config

Extend to setup Eureka web applications.

AbstractServletModule(AbstractProperties, String, String, String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.config.AbstractServletModule

AbstractUserSupport - Class in edu.emory.cci.aiw.cvrg.eureka.common.authentication

AbstractUserSupport() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.authentication.AbstractUserSupport

AbstractWebResourceWrapper - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm.clients

AbstractWebResourceWrapper(WebResource) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.AbstractWebResourceWrapper

accept(NodeVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.BinaryOperator

accept(PhenotypeVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Category

accept(DestinationVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.CohortDestination

accept(DestinationVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

accept(EtlDestinationVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlCohortDestination

accept(EtlDestinationVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

accept(EtlDestinationVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlI2B2Destination

accept(EtlDestinationVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlNeo4jDestination

accept(EtlDestinationVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlPatientSetExtractorDestination

accept(PhenotypeVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

accept(DestinationVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.I2B2Destination

accept(UserVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LdapUser

accept(UserRequestVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LdapUserRequest

accept(NodeVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Literal

accept(UserVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUser

accept(UserRequestVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUserRequest

accept(DestinationVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Neo4jDestination

accept(NodeVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Node

accept(UserVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.OAuthUser

accept(UserRequestVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.OAuthUserRequest

accept(DestinationVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PatientSetExtractorDestination

accept(PhenotypeVisitor) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeVisitable

accept(PhenotypeVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Sequence

accept(PhenotypeVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SystemPhenotype

accept(NodeVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UnaryOperator

accept(UserRequestVisitor) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequestVisitable

Performs some processing on a user entity.

accept(UserVisitor) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.UserVisitable

Performs some processing on a user entity.

accept(PhenotypeVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThresholds

accept(PhenotypeEntityVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CategoryEntity

accept(DestinationEntityVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CohortDestinationEntity

accept(DestinationEntityVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

accept(PhenotypeEntityVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

accept(DestinationEntityVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

accept(UserEntityVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LdapUserEntity

accept(UserEntityVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LocalUserEntity

accept(DestinationEntityVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Neo4jDestinationEntity

accept(UserEntityVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthUserEntity

accept(DestinationEntityVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PatientSetExtractorDestinationEntity

accept(PhenotypeEntityVisitor) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.entity.PropositionEntityVisitable

accept(PhenotypeEntityVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SequenceEntity

accept(PhenotypeEntityVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SystemProposition

accept(UserEntityVisitor) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntityVisitable

Performs some processing on a user entity.

accept(PhenotypeEntityVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdGroupEntity

active - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity_

addJobEvent(JobEvent) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

addUser(UserRequest) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

ageConceptCodePrefix - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

algorithm - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.MessageDigestEncryptionAlgorithm_

aliasFieldName - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PatientSetExtractorDestinationEntity_

aliasFieldNameProperty - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PatientSetExtractorDestinationEntity_

aliasPatientIdProperty - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PatientSetExtractorDestinationEntity_

aliasPropositionId - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PatientSetExtractorDestinationEntity_

alreadyLoaded - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity_

AppProperties - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

AppProperties() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppProperties

Constructor.

AppPropertiesLinks - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

AppPropertiesLinks() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesLinks

Constructor.

AppPropertiesModes - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

AppPropertiesModes() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesModes

Constructor.

AppPropertiesRegistration - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

AppPropertiesRegistration() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

Constructor.

AppPropertiesRegistration.OAuths - Enum in edu.emory.cci.aiw.cvrg.eureka.common.comm

AttributeMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

AttributeMixin(String, Value) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.AttributeMixin

AUTHENTICATION_METHOD - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.authentication.UserPrincipalAttributes

AuthenticationMethod - Enum in edu.emory.cci.aiw.cvrg.eureka.common.authentication

AuthenticationMethod - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

AuthenticationMethod() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.AuthenticationMethod

authenticationMethod() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LdapUser

authenticationMethod() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LdapUserRequest

authenticationMethod() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUser

authenticationMethod() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUserRequest

authenticationMethod() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.OAuthUser

authenticationMethod() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.OAuthUserRequest

authenticationMethod() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

authenticationMethod() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

authenticationMethod - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity_

AuthenticationMethodEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

AuthenticationMethodEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthenticationMethodEntity

AuthenticationMethodEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

AuthenticationMethodEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthenticationMethodEntity_

AuthorizedUser - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

AuthorizedUser() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.AuthorizedUser

AuthorizedUserDao - Interface in edu.emory.cci.aiw.cvrg.eureka.common.dao

A data access object interface for working with UserEntity objects in the data store.

AuthorizedUserEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

A bean class to hold information about users in the system.

AuthorizedUserEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity

Create an empty User object.

AuthorizedUserEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

AuthorizedUserEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity_

AuthorizedUserSupport - Class in edu.emory.cci.aiw.cvrg.eureka.common.authentication

AuthorizedUserSupport(AuthorizedUserDao) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.authentication.AuthorizedUserSupport

B

BinaryOperator - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

BinaryOperator() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.BinaryOperator

BinaryOperator.Op - Enum in edu.emory.cci.aiw.cvrg.eureka.common.comm

BinaryOperatorEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

BinaryOperatorEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.BinaryOperatorEntity

BinaryOperatorEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

BinaryOperatorEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.BinaryOperatorEntity_

BooleanValueMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

BooleanValueMixin(Boolean) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.BooleanValueMixin

C

CasWebResourceWrapper - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.cassupport

CasWebResourceWrapperFactory - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.cassupport

CasWebResourceWrapperFactory() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.cassupport.CasWebResourceWrapperFactory

Category - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

Container class for the categorical user-created phenotype from the UI.

Category() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.Category

Category.CategoricalType - Enum in edu.emory.cci.aiw.cvrg.eureka.common.comm

CategoryEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

CategoryEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.CategoryEntity

CategoryEntity.CategoryType - Enum in edu.emory.cci.aiw.cvrg.eureka.common.entity

CategoryEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

CategoryEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.CategoryEntity_

categoryType - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity_

changePassword(String, String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

cipherAlgorithm - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CipherEncryptionAlgorithm_

CipherEncryptionAlgorithm - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

CipherEncryptionAlgorithm() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.CipherEncryptionAlgorithm

CipherEncryptionAlgorithm_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

CipherEncryptionAlgorithm_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.CipherEncryptionAlgorithm_

cipherKey - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams_

ClientException - Exception in edu.emory.cci.aiw.cvrg.eureka.common.comm.clients

Thrown by a REST client when the response of a REST call signifies an error condition.

ClientException(ClientResponse.Status, String) - Constructor for exception edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ClientException

Creates the exception using the provided response status and message.

codePrefix - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity_

Cohort - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

Cohort() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.Cohort

cohort - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CohortDestinationEntity_

CohortDestination - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

CohortDestination() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.CohortDestination

CohortDestinationEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

CohortDestinationEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.CohortDestinationEntity

CohortDestinationEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

CohortDestinationEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.CohortDestinationEntity_

CohortEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

CohortEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.CohortEntity

CohortEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

CohortEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.CohortEntity_

CommUtils - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

Utility methods related to dealing with communication between different layers of the application.

compare(JobEvent, JobEvent) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEventComparator

complement - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator_

CompoundLowLevelAbstractionJsonDeserializer - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

CompoundLowLevelAbstractionJsonDeserializer() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.CompoundLowLevelAbstractionJsonDeserializer

CompoundLowLevelAbstractionJsonSerializer - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

CompoundLowLevelAbstractionJsonSerializer() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.CompoundLowLevelAbstractionJsonSerializer

conceptCodePrefix - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity_

conceptSpec - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity_

conceptSpecs - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

ConfigEntity - Interface in edu.emory.cci.aiw.cvrg.eureka.common.entity

configName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership

configName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership

configureServlets() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.config.AbstractJerseyServletModule

configureServlets() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.config.AbstractJerseyServletModuleWithPersist

configureServlets() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.config.AbstractServletModule

consecutive - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity_

ConstantMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

ConstantMixin(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.ConstantMixin

ContextDefinitionMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

ContextDefinitionMixin(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.ContextDefinitionMixin

count - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity_

create(T) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.dao.Dao

Creates (persists) the given entity in the data store.

create(T) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.dao.GenericDao

created - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity_

created - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity_

created - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity_

createdAt - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity_

createDestination(Destination) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

D

Dao<T,PK> - Interface in edu.emory.cci.aiw.cvrg.eureka.common.dao

Provides an interface for the common CRUD operations for an entity.

DatabaseSupport - Class in edu.emory.cci.aiw.cvrg.eureka.common.dao

DatabaseSupport(EntityManager) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.dao.DatabaseSupport

dataConnect - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

dataPassword - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

dataRemoveMethod - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

dataSpecs - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

dataUser - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

dbHome - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Neo4jDestinationEntity_

defaultRole - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Role_

DefaultSourceConfigOption - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

DefaultSourceConfigOption() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.DefaultSourceConfigOption

DefaultSourceIdMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

DefaultSourceIdMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.DefaultSourceIdMixin

deidentificationEnabled - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity_

DeidPerPatientParams - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

DeidPerPatientParams() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams

DeidPerPatientParams(DestinationEntity, String, int) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams

DeidPerPatientParams_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

DeidPerPatientParams_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams_

deleteDestination(Long, String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

deleteUserPhenotype(Long, Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

department - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity_

description - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthenticationMethodEntity_

description - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity_

description - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EncryptionAlgorithm_

description - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyType_

description - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationIntervalSide_

description - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationRemoveMethod_

description - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationValueTypeCode_

description - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LoginTypeEntity_

description - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthProvider_

description - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator_

description - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ThresholdsOperator_

description - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.TimeUnit_

description - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator_

deserialize(JsonParser, DeserializationContext) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.CompoundLowLevelAbstractionJsonDeserializer

deserialize(JsonParser, DeserializationContext) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.HighLevelAbstractionJsonDeserializer

deserialize(JsonParser, DeserializationContext) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.LowLevelAbstractionJsonDeserializer

deserialize(JsonParser, DeserializationContext) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.SliceAbstractionJsonDeserializer

deserialize(JsonParser, DeserializationContext) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.SourceConfigOptionValueDeserializer

deserializeWithType(JsonParser, DeserializationContext, TypeDeserializer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.SourceConfigOptionValueDeserializer

Destination - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

The configuration for a Protempa run, including the input data store information, the output i2b2 data store information, ontology information, and other related items.

Destination() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

destination - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams_

destination - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership_

destination - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity_

destination - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity_

destination - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity_

destination - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LinkEntity_

DestinationEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

DestinationEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

DestinationEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

DestinationEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity_

DestinationEntityVisitor - Interface in edu.emory.cci.aiw.cvrg.eureka.common.entity

DestinationGroupMembership - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

DestinationGroupMembership() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership

DestinationGroupMembership_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

DestinationGroupMembership_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership_

destinations - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity_

destinations - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EtlGroup_

DestinationType - Enum in edu.emory.cci.aiw.cvrg.eureka.common.comm

DestinationVisitor - Interface in edu.emory.cci.aiw.cvrg.eureka.common.comm

destroy() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.filter.RolesFilter

displayName - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LinkEntity_

displayName - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity_

doDelete(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

doDelete(String, Object) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.filter.RolesFilter

doGet(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

doGet(String, MultivaluedMap<String, String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

doGet(String, Class<T>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

doGet(String, Class<T>, MultivaluedMap<String, String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

doGet(String, GenericType<T>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

doGet(String, GenericType<T>, MultivaluedMap<String, String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

doGetResponse(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

doPost(String, Class<T>, MultivaluedMap<String, String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

doPost(String, GenericType<T>, MultivaluedMap<String, String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

doPost(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

doPost(String, Object) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

doPost(String, Object, Class<T>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

doPostCreate(String, Object) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

doPostMultipart(String, String, InputStream) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

doPut(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

doPut(String, Object) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

E

edu.emory.cci.aiw.cvrg.eureka.common.authentication - package edu.emory.cci.aiw.cvrg.eureka.common.authentication

edu.emory.cci.aiw.cvrg.eureka.common.comm - package edu.emory.cci.aiw.cvrg.eureka.common.comm

edu.emory.cci.aiw.cvrg.eureka.common.comm.clients - package edu.emory.cci.aiw.cvrg.eureka.common.comm.clients

edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.cassupport - package edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.cassupport

edu.emory.cci.aiw.cvrg.eureka.common.config - package edu.emory.cci.aiw.cvrg.eureka.common.config

edu.emory.cci.aiw.cvrg.eureka.common.dao - package edu.emory.cci.aiw.cvrg.eureka.common.dao

edu.emory.cci.aiw.cvrg.eureka.common.entity - package edu.emory.cci.aiw.cvrg.eureka.common.entity

edu.emory.cci.aiw.cvrg.eureka.common.exception - package edu.emory.cci.aiw.cvrg.eureka.common.exception

edu.emory.cci.aiw.cvrg.eureka.common.filter - package edu.emory.cci.aiw.cvrg.eureka.common.filter

edu.emory.cci.aiw.cvrg.eureka.common.json - package edu.emory.cci.aiw.cvrg.eureka.common.json

edu.emory.cci.aiw.cvrg.eureka.common.props - package edu.emory.cci.aiw.cvrg.eureka.common.props

edu.emory.cci.aiw.cvrg.eureka.common.util - package edu.emory.cci.aiw.cvrg.eureka.common.util

effectiveAt - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity_

email - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity_

EMPTY_SECTION_ARRAY - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

encryptionAlgorithm - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity_

EncryptionAlgorithm - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

EncryptionAlgorithm() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.EncryptionAlgorithm

EncryptionAlgorithm_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

EncryptionAlgorithm_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.EncryptionAlgorithm_

equals(Object) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PatientSet

equals(Object) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Role

errorIfStatusEqualTo(ClientResponse, ClientResponse.Status...) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

errorIfStatusNotEqualTo(ClientResponse, ClientResponse.Status...) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

EtlCohortDestination - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

EtlCohortDestination() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlCohortDestination

EtlDestination - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

The configuration for a Protempa run, including the input data store information, the output i2b2 data store information, ontology information, and other related items.

EtlDestination() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

EtlDestination(Destination) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

EtlDestinationVisitor - Interface in edu.emory.cci.aiw.cvrg.eureka.common.comm

EtlGroup - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

EtlGroup() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.EtlGroup

EtlGroup_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

EtlGroup_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.EtlGroup_

EtlI2B2Destination - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

EtlI2B2Destination() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlI2B2Destination

EtlNeo4jDestination - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

EtlNeo4jDestination() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlNeo4jDestination

EtlPatientSetExtractorDestination - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

EtlPatientSetExtractorDestination() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlPatientSetExtractorDestination

EurekaClient - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm.clients

EurekaClient() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

evaluate(Map<String, List<Proposition>>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Cohort

EventMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

EventMixin(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.EventMixin

expiredAt - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity_

ExtendedPhenotype - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

An ExtendedPhenotype represents a phenotype with constraints on its duration and one of its property values.

ExtendedPhenotype() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype

extendedPhenotype - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity_

ExtendedPhenotype_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

ExtendedPhenotype_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype_

extendedPhenotypes - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity_

ExtendedPropositionMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

ExtendedPropositionMixin(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.ExtendedPropositionMixin

extractId(URI) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

F

FileSourceConfigOption - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

FileSourceConfigOption() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.FileSourceConfigOption

filter(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.filter.SearchFilter

finish - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity_

finish - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LiteralEntity_

firstName - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity_

Frequency - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

Frequency() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

FrequencyEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

Contains attributes which describe a Protempa slice abstraction in the context of the Eureka! UI.

FrequencyEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

FrequencyEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

FrequencyEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity_

frequencyType - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity_

FrequencyType - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

FrequencyType() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyType

FrequencyType_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

FrequencyType_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyType_

fullName - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity_

G

GapFunctionMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

GapFunctionMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.GapFunctionMixin

generate(HttpServletRequest) - Static method in class edu.emory.cci.aiw.cvrg.eureka.common.props.PublicUrlGenerator

Generates Eureka!'s best guess at the public URL.

GenericDao<T,PK> - Class in edu.emory.cci.aiw.cvrg.eureka.common.dao

Implements the Dao interface in a generic way.

GenericDao(Class<T>, Provider<EntityManager>) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.dao.GenericDao

Creates a generic DAO that handles the given type of entity.

GenericDao.QueryPathProvider<E,P> - Interface in edu.emory.cci.aiw.cvrg.eureka.common.dao

Provides an interface for the subclasses to easily perform queries without having to deal with a lot of boiler-plate code.

GenericDao.SqlComparator - Enum in edu.emory.cci.aiw.cvrg.eureka.common.dao

getAbbrevDisplayName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Gets the phenotype definition's abbreviated display name.

getAbstractedFrom() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

getAbstractedFrom() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SequenceEntity

Gets the list of propositions the current proposition is abstracted from.

getAbstractedFrom() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

getAbstractedFrom() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.SequentialTemporalPatternDefinitionMixin

getAcceptedMimetypes() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.FileSourceConfigOption

getAcceptedMimetypes() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigParams.Upload

getAgeConceptCodePrefix() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getAiwUrl() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesLinks

Gets the aiwSiteUrl.

getAlgorithm() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.MessageDigestEncryptionAlgorithm

getAlgorithmSourceBackends() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

getAliasFieldName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PatientSetExtractorDestinationEntity

getAliasFieldNameProperty() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PatientSetExtractorDestinationEntity

getAliasPatientIdProperty() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PatientSetExtractorDestinationEntity

getAliasPropositionId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlPatientSetExtractorDestination

getAliasPropositionId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PatientSetExtractorDestination

getAliasPropositionId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PatientSetExtractorDestinationEntity

getAll() - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.dao.Dao

Retrieves a list of all the entities of the given type in the data store.

getAll(Class<T>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.dao.DatabaseSupport

getAll() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.dao.GenericDao

getApplicationUrl() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

Get the base URL for the application front-end for external users.

getAppPropertiesLinks() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppProperties

Gets the AppPropertiesLinks.

getAppPropertiesModes() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppProperties

Gets the AppPropertiesModes.

getAppPropertiesRegistration() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppProperties

Gets the AppPropertiesRegistration.

getAtLeast() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

getAuthenticationMethod() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

getBoolean() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.BooleanValueMixin

getBuildNumber() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

getByAttributePrincipal(AttributePrincipal) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.dao.AuthorizedUserDao

getByUsername(String) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.dao.AuthorizedUserDao

Get a user object, given the user name.

getCalendarUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.AbsoluteTimeUnitMixin

getCasLoginUrl() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

getCasLogoutUrl() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

getCasUrl() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

getCategoricalType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Category

getCategoricalType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

getCategoryType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

getChildren() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Category

getChildren() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Gets this phenotype definition's children, if any.

getChildren() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SystemPhenotype

getChildren() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropositionChildrenVisitor

getChildren() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.ConstantMixin

getChildren() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.ContextDefinitionMixin

getChildren() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.EventMixin

getChildren() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.PrimitiveParameterMixin

getChildren() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.SequentialTemporalPatternDefinitionMixin

getChildrenToParents() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Statistics

getCipherAlgorithm() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CipherEncryptionAlgorithm

getCipherKey() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams

getCodePrefix() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity

getCohort() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.CohortDestination

getCohort() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlCohortDestination

getCohort() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CohortDestinationEntity

getCohortDestinations() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getComplement() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator

getConceptCodePrefix() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

getConceptSpec() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity

getConceptSpecs() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getConfigDir() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

getContext(Class<?>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.ObjectMapperProvider

getCount() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

getCounts() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Statistics

getCreated() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

getCreated() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Gets the creation date of this phenotype definition.

getCreated() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

getCreated() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

getCreated() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

Gets the creation date.

getCreated() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

getCreatedAt() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

getCreatedAt() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

getCreatedAt() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

getCurrentStatus() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

getDataConnect() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getDataPassword() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getDataRemoveMethod() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getDataSourceBackends() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

getDataSpecs() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getDataUser() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getDateRangePhenotypeKey() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

getDbHome() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Neo4jDestinationEntity

getDbPath() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlNeo4jDestination

getDbPath() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Neo4jDestination

getDefaultSystemPropositions() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

Gets the default list of system propositions for the application.

getDepartment() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

getDepartment() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Get the user's department.

getDepartment() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Get the user's Department.

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AuthenticationMethod

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LoginType

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigOption

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthenticationMethodEntity

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EncryptionAlgorithm

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyType

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationIntervalSide

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationRemoveMethod

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationValueTypeCode

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LoginTypeEntity

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthProvider

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

Gets the phenotype's description.

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ThresholdsOperator

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.TimeUnit

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator

getDestination(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getDestination() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams

getDestination() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership

getDestination() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity

getDestination() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

getDestination() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

getDestination() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LinkEntity

getDestinationId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

getDestinationId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

getDestinationId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

getDestinations() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getDestinations() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity

getDestinations() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EtlGroup

getDisplayName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Link

getDisplayName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

getDisplayName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Gets the phenotype definition's display name.

getDisplayName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

getDisplayName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig.Section

getDisplayName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigOption

getDisplayName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LinkEntity

getDisplayName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

Gets the display name of the phenotype.

getEarliestDate() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

getEarliestDateSide() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

getEffectiveAt() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

getEmail() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

getEmail() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Get the user's email address.

getEmail() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Get the user's email address.

getEncryptionAlgorithm() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

getEntityManager() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.dao.GenericDao

Returns an entity manager instance that can be used to interact with the data source.

getExceptionStackTrace() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent

getExpiredAt() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

getExtendedPhenotypes() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

getExtendedProposition() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

getFinish() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Literal

getFinish() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

getFinish() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LiteralEntity

getFinishedDate() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

getFinishedDateFormatted() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

getFirstName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

getFirstName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Get the user's first name.

getFirstName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Get the user's first name.

getFormatted() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.ValueMixin

getFrequencyType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

getFrequencyType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

getFrequencyTypesAsc() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getFrom() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobFilter

getFullName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

getFullName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

getFullName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

getGitHubOAuthKey() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

getGitHubOAuthSecret() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

getGlobusOAuthKey() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

getGlobusOAuthSecret() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

getGoogleOAuthKey() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

getGoogleOAuthSecret() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

getGroup() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership

getGroup() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership

getGroups() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity

getGroups() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

getGroups() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigEntity

getHasDuration() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

getHasPropertyConstraint() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

getHelpSiteUrl() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesLinks

Gets the helpSiteUrl.

getI2B2Destinations() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AuthenticationMethod

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AuthorizedUser

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Cohort

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

Get the unique identifier for the configuration.

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

Get the unique identifier for the configuration.

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LoginType

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Node

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Returns a user phenotype definition's id.

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig.Section

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigParams

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Get the request's unique identifier.

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthenticationMethodEntity

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity

Get the user's unique identifier.

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CohortEntity

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EncryptionAlgorithm

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EtlGroup

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyType

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationIntervalSide

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationRemoveMethod

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationValueTypeCode

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

Get the unique identifier for the job request.

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LinkEntity

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LoginTypeEntity

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.NodeEntity

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthProvider

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

Gets the unique identifier for the phenotype.

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropertyConstraint

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Role

Get the role's identification number.

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigEntity

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ThresholdsOperator

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.TimeUnit

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Get the user's unique identifier.

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

getIncrementalVersion() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

getInjector() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.config.InjectorSupport

getInstance(WebResource) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.cassupport.CasWebResourceWrapperFactory

getInstance(WebResource) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.WebResourceWrapperFactory

getInstance(String) - Static method in class edu.emory.cci.aiw.cvrg.eureka.common.json.DefaultSourceIdMixin

getInstance(String) - Static method in class edu.emory.cci.aiw.cvrg.eureka.common.json.NominalValueMixin

getInstance(BigDecimal) - Static method in class edu.emory.cci.aiw.cvrg.eureka.common.json.NumberValueMixin

getIntValue(String, int) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

Utility method to get an int from the properties file.

getIsConsecutive() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

getIsWithin() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

getJob(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getJob() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent

getJobEvents() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

Gets job events, assumed in order of occurrence.

getJobEvents() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

getJobEventsInOrder() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

Gets job events sorted in reverse order of occurrence.

getJobEventsInReverseOrder() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

Gets job events sorted in reverse order of occurrence.

getJobId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobFilter

getJobId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

getJobs() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getJobs() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity

getJobsDesc() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getJobSpec() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobRequest

getJobStats(Long, String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getKey() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

getKey() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Returns a system phenotype definition's id string.

getKey() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

Gets the key for the phenotype.

getKeyAlgorithm() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CipherEncryptionAlgorithm

getKeyGeneratorInstance() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CipherEncryptionAlgorithm

getKeyId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams

getKnowledgeSourceBackends() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

getLastLogin() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

getLastLogin() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Get the last log-in date for the user.

getLastModified() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

getLastModified() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Gets the last modified date of this phenotype definition.

getLastModified() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

Gets the last modification time.

getLastName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

getLastName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Get the user's last name.

getLastName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Get the user's last name.

getLatestDate() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

getLatestDateSide() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

getLeftNode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.BinaryOperator

getLeftNode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.BinaryOperatorEntity

getLhsExtendedPhenotype() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

getLinks() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

getLinks() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

getLinks() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

getLinks() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

getLinks() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

getListAsc(SingularAttribute<T, ?>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.dao.GenericDao

getListByAttribute(Class<T>, SingularAttribute<T, Y>, Y) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.dao.DatabaseSupport

getListByAttribute(SingularAttribute<T, Y>, Y) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.dao.GenericDao

getListByAttribute(SingularAttribute<T, Y>, GenericDao.SqlComparator, Y) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.dao.GenericDao

getListByAttribute(GenericDao.QueryPathProvider<T, Y>, Y) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.dao.GenericDao

Get a list of entities whose path value is the same as the given target value.

getLoginType() - Method in enum edu.emory.cci.aiw.cvrg.eureka.common.authentication.AuthenticationMethod

getLoginType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

getLoginType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

getLoginType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

getLowerComp() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

getLowerUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

getLowerValue() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

getMajorVersion() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

getManageCTotalNum() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getMaxDuration() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

getMaxDuration() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype

getMaxDurationTimeUnit() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype

getMaxDurationUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

getMaxf1s2() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

getMaxf1s2TimeUnit() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

getMaxs1f2() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

getMaxs1f2TimeUnit() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

getMaxTValueThreshold() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

getMaxUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

getMaxValueComp() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

getMaxValueThreshold() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

getMe() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getMembers() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CategoryEntity

getMergeOnUpdate() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getMessage() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent

getMessages() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

getMetaConnect() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getMetaPassword() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getMetaRemoveMethod() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getMetaTableName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getMetaUser() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getMinDuration() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

getMinDuration() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype

getMinDurationTimeUnit() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype

getMinDurationUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

getMinf1s2() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

getMinf1s2TimeUnit() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

getMinorVersion() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

getMins1f2() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

getMins1f2TimeUnit() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

getMinTValueThreshold() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

getMinUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

getMinValueComp() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

getMinValueThreshold() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

getModifierSpecs() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity

getMostRecentMessage() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AuthenticationMethod

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Literal

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LoginType

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PatientSet

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigOption

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigParams

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigParams.Upload

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThresholds

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthenticationMethodEntity

getName() - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.entity.ConfigEntity

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EncryptionAlgorithm

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EtlGroup

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyType

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationIntervalSide

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationRemoveMethod

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationValueTypeCode

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LiteralEntity

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LoginTypeEntity

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthProvider

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Role

Get the role's name.

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigEntity

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ThresholdsOperator

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.TimeUnit

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.SupportUri

getNewPassword() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PasswordChangeRequest

getNode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Cohort

getNode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UnaryOperator

getNode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CohortEntity

getNode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UnaryOperatorEntity

getNodeEntity() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.NodeToNodeEntityVisitor

getNumber() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.NumberValueMixin

getNumberOfKeys() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Statistics

getNumberValue() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.NumberValueMixin

getOAuthProvider(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getOAuthProvider() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.OAuthUser

getOAuthProvider() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.OAuthUserRequest

getOAuthProvider() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthUserEntity

getOAuthProviderByName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getOAuthRegistrationProviders() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

getOffset() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams

getOffsets() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

getOldPassword() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PasswordChangeRequest

getOp() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.BinaryOperator

getOp() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UnaryOperator

getOp() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.BinaryOperatorEntity

getOp() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UnaryOperatorEntity

getOptions() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig.Section

getOrganization() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

getOrganization() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Get the user's organization.

getOrganization() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Get the user's organization.

getOrganizationName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesLinks

Gets the organizationName.

getOutput(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getOutputName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

getOutputType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

getOwner() - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.entity.ConfigEntity

getOwner() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

getOwner() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigEntity

getOwnerUserId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

Get the unique identifier for the owner of the configuration.

getOwnerUserId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

Get the unique identifier for the owner of the configuration.

getOwnerUsername() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

getPassword() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUser

getPassword() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUserRequest

Get the user's password.

getPassword() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LocalUserEntity

Get the user's password

getPasswordExpiration() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUser

getPasswordExpiration() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LocalUserEntity

Get the user's password expiration date.

getPath(Root<E>, CriteriaBuilder) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.dao.GenericDao.QueryPathProvider

Provides a path from the entity to the target attribute.

getPatientDimensionBirthdate() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getPatientDimensionDeathDate() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getPatientDimensionGender() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getPatientDimensionLanguage() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getPatientDimensionMaritalStatus() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getPatientDimensionMRN() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getPatientDimensionRace() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getPatientDimensionReligion() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getPatientDimensionVital() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getPatientDimensionZipCode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getPatients() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PatientSet

getPhenotype() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

getPhenotype() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

getPhenotypeDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

getPhenotypeDisplayName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

getPhenotypeEntity() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype

getPhenotypeField() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.RelatedPhenotypeField

getPhenotypeFields() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

getPhenotypeFields() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

getPhenotypeKey() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

getPhenotypes(String[], boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getPrimaryExtendedPhenotype() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SequenceEntity

getPrimaryPhenotype() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Sequence

getPrompts() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

getProperties() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Gets this phenotype definition's properties, if any.

getProperties() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SystemPhenotype

getProperty() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

getProperty() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity

getProperty() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

getProperty() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity

getPropertyConstraint() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype

getPropertyName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropertyConstraint

getPropertyType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigOption

getPropertyValue() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

getProposition() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity

getPropositionIds() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

getPropositionIdsToShow() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobRequest

getPropositions() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValidationRequest

getProviderFirstName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getProviderFullName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getProviderLastName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getProviderMiddleName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getProviderUsername() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.OAuthUser

getProviderUsername() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.OAuthUserRequest

getProviderUsername() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthUserEntity

getProxyCallbackServer() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

getQualifier() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

getRank() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EncryptionAlgorithm

getRank() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyType

getRank() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationIntervalSide

getRank() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationRemoveMethod

getRank() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationValueTypeCode

getRank() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator

getRank() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.TimeUnit

getRank() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator

getReference() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity

getReference() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

getRelatedPhenotypes() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Sequence

getRelatedPhenotypes() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

getRelatedTemporalExtendedPropositionDefinition() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.SubsequentTemporalExtendedPropositionDefinitionMixin

getRelationMaxCount() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.RelatedPhenotypeField

getRelationMaxUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.RelatedPhenotypeField

getRelationMinCount() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.RelatedPhenotypeField

getRelationMinUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.RelatedPhenotypeField

getRelationOperator(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getRelationOperator() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.RelatedPhenotypeField

getRelationOperator() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

getRelationOperator() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

getRelationOperator() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

getRelationOperatorByName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getRelationOperatorsAsc() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getRelations() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SequenceEntity

getRequiredConcepts() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

getRequiredPropositionIds() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

getResource() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.AbstractClient

getResourceUrl() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.AbstractClient

getResourceUrl() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getResourceWrapper() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.EurekaClient

getResponseStatus() - Method in exception edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ClientException

Returns the response status of the REST call that this exception concerns.

getRestClient() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.AbstractClient

getRhsExtendedPhenotype() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

getRightNode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.BinaryOperator

getRightNode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.BinaryOperatorEntity

getRole(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getRoles() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getRoles() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

getRoles() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Get all the roles assigned to the user.

getRoles() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.filter.RolesRequestWrapper

getRootNodeName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getSalt() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams

getSampleUrl() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigParams.Upload

getSequentialPhenotype() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.RelatedPhenotypeField

getSequentialPhenotypeSource() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.RelatedPhenotypeField

getShortDisplayName() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.ExtendedPropositionMixin

getSkipDemographicsHierarchy() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getSkipProviderHierarchy() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getSourceConfig(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getSourceConfig() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership

getSourceConfigId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

getSourceConfigId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

getSourceConfigId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

getSourceConfigId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

Get the unique identifier of the configuration to be used for the job request.

getSourceConfigParams() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getSourceConfigs() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getSourceConfigs() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity

getSourceConfigs() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EtlGroup

getSourceId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigParams.Upload

getSourceSystemCode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getStage() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

getStart() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Literal

getStart() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

getStart() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LiteralEntity

getStartedDate() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

getStartedDateFormatted() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

getState() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobFilter

getState() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

getStatus() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

getStatus() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

getStatus() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent

getStatus() - Method in exception edu.emory.cci.aiw.cvrg.eureka.common.exception.HttpStatusException

getStatus() - Method in exception edu.emory.cci.aiw.cvrg.eureka.common.exception.PhenotypeHandlingException

getStringListValue(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

Reads in a property value as a whitespace-delimited list of items.

getStringListValue(String, List<String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

Reads in a property value as a whitespace-delimited list of items.

getStringRepresentation() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.NotRecordedSourceIdMixin

getSupportUri() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesLinks

Gets the supportUri.

getSupportUri() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

Get the support email address for the application.

getSystemPhenotype(String, boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getSystemPhenotypes() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getSystemPhenotypes(List<String>, boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getSystemPhenotypeSearchResults(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getSystemPhenotypeSearchResultsBySearchKey(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getSystemType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SystemPhenotype

getSystemType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SystemProposition

getTargetProposition() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValidationRequest

getTermSourceBackends() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

getThreshold() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator

getThresholdsOperator(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getThresholdsOperator() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThresholds

getThresholdsOperator() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdGroupEntity

getThresholdsOperatorByName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getThresholdsOperators() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getTimestamp() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

getTimeStamp() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent

getTimeUnit(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getTimeUnitByName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getTimeUnitsAsc() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getTitle() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

getTitle() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Get the user's title.

getTitle() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Get the user's title.

getTo() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobFilter

getTwitterOAuthKey() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

getTwitterOAuthSecret() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

getType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

getType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

getType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

getType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

getType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Gets the type of a user phenotype definition.

getType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropositionTypeVisitor

getType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator

getType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.ValueMixin

getUniqueByAttribute(Class<T>, SingularAttribute<T, Y>, Y) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.dao.DatabaseSupport

getUniqueByAttribute(SingularAttribute<T, Y>, Y) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.dao.GenericDao

Provides a convenient way for subclasses to implement simple queries that compare an attribute of the entity to a target value.

getUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

getUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.AbsoluteTimeUnitMixin

getUpdatedAt() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

getUpdatedAt() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

getUploads() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigParams

getUpperComp() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

getUpperUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

getUpperValue() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

getUri() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.SupportUri

getUrl() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Link

getUrl() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LinkEntity

getUser(HttpServletRequest) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.authentication.AuthorizedUserSupport

Returns the user object, or if there isn't one, throws an exception.

getUser() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

Get the unique identifier for the user who submitted the request.

getUser() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntityToUserVisitor

getUserById(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getUserId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobFilter

getUserId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

getUserId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Returns a user phenotype definition's user id.

getUserId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValidationRequest

getUserId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

Gets the user to which this phenotype belongs.

getUsername() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AuthorizedUser

getUsername() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

getUsername() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PatientSet

getUsername() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

getUsername() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Gets the user's unique username.

getUsername() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity

Get the user's email address.

getUsername() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

getUserPhenotype(String, boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getUserPhenotypes(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getUserPrincipal(HttpServletRequest) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.authentication.AbstractUserSupport

getUserPrincipal(HttpServletRequest) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.authentication.UserSupport

getUserPrincipal() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.filter.RolesRequestWrapper

getUserPrincipalAttributes(HttpServletRequest) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.authentication.AbstractUserSupport

getUserPrincipalAttributes(HttpServletRequest) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.authentication.UserSupport

getUserPropositions() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobRequest

getUsers() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getUsers() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EtlGroup

getUsers() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntityToUserVisitor

getVal() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity

getValue() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigOption

getValue() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropertyConstraint

getValue(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

Returns the String value of the given property name.

getValue(String, String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.AbstractProperties

Returns the String value of the given property name, or the given default if the given property name does not exist.

getValueComparator(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getValueComparator() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropertyConstraint

getValueComparatorByName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getValueComparatorsAsc() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

getValueThresholds() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThresholds

getValueThresholds() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdGroupEntity

getValueTypeCode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity

getVerificationCode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUser

getVerificationCode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LocalUserEntity

getVerifyEmail() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Set the user's email address verification.

getVerifyPassword() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUserRequest

Get the password verification.

getVisitDimension() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getVisitDimensionId() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getVisitDimensionInOut() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

getWebResource() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.AbstractWebResourceWrapper

getWithinAtLeast() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

getWithinAtLeast() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

getWithinAtLeast() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

getWithinAtLeast() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

getWithinAtLeastUnit() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

getWithinAtLeastUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

getWithinAtLeastUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

getWithinAtLeastUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

getWithinAtMost() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

getWithinAtMost() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

getWithinAtMost() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

getWithinAtMost() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

getWithinAtMostUnit() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

getWithinAtMostUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

getWithinAtMostUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

getWithinAtMostUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

group - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership_

group - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership_

groupExecute - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership_

groupExecute - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership_

groupRead - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership_

groupRead - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership_

groups - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity_

groups - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity_

groups - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigEntity_

groupWrite - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership_

groupWrite - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership_

H

hashCode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PatientSet

hashCode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Role

HighLevelAbstractionJsonDeserializer - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

HighLevelAbstractionJsonDeserializer() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.HighLevelAbstractionJsonDeserializer

HighLevelAbstractionJsonSerializer - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

HighLevelAbstractionJsonSerializer() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.HighLevelAbstractionJsonSerializer

HttpStatusException - Exception in edu.emory.cci.aiw.cvrg.eureka.common.exception

HttpStatusException(Response.Status) - Constructor for exception edu.emory.cci.aiw.cvrg.eureka.common.exception.HttpStatusException

HttpStatusException(Response.Status, String) - Constructor for exception edu.emory.cci.aiw.cvrg.eureka.common.exception.HttpStatusException

HttpStatusException(Response.Status, Throwable) - Constructor for exception edu.emory.cci.aiw.cvrg.eureka.common.exception.HttpStatusException

HttpStatusException(Response.Status, String, Throwable) - Constructor for exception edu.emory.cci.aiw.cvrg.eureka.common.exception.HttpStatusException

I

I2B2Destination - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

I2B2Destination() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.I2B2Destination

I2B2DestinationConceptSpecEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

I2B2DestinationConceptSpecEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity

I2B2DestinationConceptSpecEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

I2B2DestinationConceptSpecEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity_

I2B2DestinationDataSpecEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

I2B2DestinationDataSpecEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

I2B2DestinationDataSpecEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

I2B2DestinationDataSpecEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity_

I2B2DestinationEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

I2B2DestinationEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

I2B2DestinationEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

I2B2DestinationEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

I2B2DestinationIntervalSide - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

I2B2DestinationIntervalSide() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationIntervalSide

I2B2DestinationIntervalSide_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

I2B2DestinationIntervalSide_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationIntervalSide_

I2B2DestinationModifierSpecEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

I2B2DestinationModifierSpecEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity

I2B2DestinationModifierSpecEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

I2B2DestinationModifierSpecEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity_

I2B2DestinationRemoveMethod - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

I2B2DestinationRemoveMethod() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationRemoveMethod

I2B2DestinationRemoveMethod_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

I2B2DestinationRemoveMethod_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationRemoveMethod_

I2B2DestinationValueTypeCode - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

I2B2DestinationValueTypeCode() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationValueTypeCode

I2B2DestinationValueTypeCode_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

I2B2DestinationValueTypeCode_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationValueTypeCode_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthenticationMethodEntity_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CohortEntity_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EncryptionAlgorithm_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EtlGroup_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyType_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationIntervalSide_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationRemoveMethod_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationValueTypeCode_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LinkEntity_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LoginTypeEntity_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.NodeEntity_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthProvider_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropertyConstraint_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Role_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigEntity_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ThresholdsOperator_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.TimeUnit_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity_

init(FilterConfig) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.filter.RolesFilter

InjectorSupport - Class in edu.emory.cci.aiw.cvrg.eureka.common.config

InjectorSupport(Module[], Stage) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.config.InjectorSupport

InjectorSupport(Module[], AbstractProperties) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.config.InjectorSupport

inSystem - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity_

isActive() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

isActive() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Get whether the user is active or not.

isAllowingQueryPropositionIds() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

isAllowingQueryPropositionIds() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CohortDestinationEntity

isAllowingQueryPropositionIds() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

isAllowingQueryPropositionIds() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

isAllowingQueryPropositionIds() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Neo4jDestinationEntity

isAllowingQueryPropositionIds() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PatientSetExtractorDestinationEntity

isAlreadyLoaded() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity

isConcatenable() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.ConstantMixin

isConcatenable() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.ContextDefinitionMixin

isConcatenable() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.EventMixin

isConcatenable() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.PrimitiveParameterMixin

isConsecutive() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

isDefault() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EncryptionAlgorithm

isDefault - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EncryptionAlgorithm_

isDefault() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyType

isDefault - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyType_

isDefault() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationIntervalSide

isDefault - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationIntervalSide_

isDefault() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationRemoveMethod

isDefault - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationRemoveMethod_

isDefault() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationValueTypeCode

isDefault - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationValueTypeCode_

isDefault() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator

isDefault - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator_

isDefault() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.TimeUnit

isDefault - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.TimeUnit_

isDefaultRole() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Role

Is this role a default role?

isDeidentificationEnabled() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

isDemoMode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesModes

Gets the demoMode status.

isEphiProhibited() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesModes

Gets the ephiProhibited status.

isExecute() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

isExecute() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

isExecute() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

isGetStatisticsSupported() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

isGetStatisticsSupported() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

isGetStatisticsSupported() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

isGetStatisticsSupported() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

isGetStatisticsSupported() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CohortDestinationEntity

isGetStatisticsSupported() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

isGetStatisticsSupported() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

isGetStatisticsSupported() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Neo4jDestinationEntity

isGetStatisticsSupported() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PatientSetExtractorDestinationEntity

isGroupExecute() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership

isGroupExecute() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership

isGroupRead() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership

isGroupRead() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership

isGroupWrite() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership

isGroupWrite() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership

isHyperlinkable() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.SupportUri

isInherited() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.PropertyMixin

isInSystem() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

isInSystem() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

isInSystem() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Gets whether this phenotype definition is a system or user data element definition.

isInSystem() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SystemPhenotype

isInSystem() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

Is the proposition a system level element?

isInSystem() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SystemProposition

isInternalNode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

isJobConceptListSupported() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

isJobSubmitted() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

isLocalAccountRegistrationEnabled() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

Gets the localAccountRegistrationEnabled.

isParent() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Returns whether this phenotype definition has children.

isParent() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SystemPhenotype

isPrompt() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigOption

isRead() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

isRead() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

isRead() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

isRegistrationEnabled() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

isRequired() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigOption

isRequired() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigParams.Upload

isReversible() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CipherEncryptionAlgorithm

isReversible() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.MessageDigestEncryptionAlgorithm

isSameUser(HttpServletRequest, UserRequest) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.authentication.AbstractUserSupport

isSameUser(HttpServletRequest, User) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.authentication.AbstractUserSupport

isSameUser(HttpServletRequest, UserEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.authentication.AbstractUserSupport

isSameUser(HttpServletRequest, String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.authentication.AbstractUserSupport

isSameUser(HttpServletRequest, AuthorizedUserEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.authentication.AuthorizedUserSupport

isSameUser(HttpServletRequest, UserRequest) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.authentication.UserSupport

isSameUser(HttpServletRequest, User) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.authentication.UserSupport

isSameUser(HttpServletRequest, UserEntity) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.authentication.UserSupport

isSameUser(HttpServletRequest, String) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.authentication.UserSupport

isSolid() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.ConstantMixin

isSolid() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.ContextDefinitionMixin

isSolid() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.EventMixin

isSolid() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.PrimitiveParameterMixin

isSummarized() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

isSummarized() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Gets whether or not the children of this proposition are included in the message.

isUpdateData() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

isUserInRole(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.filter.RolesRequestWrapper

isVerified() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUser

isVerified() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LocalUserEntity

Get whether the user has been verified.

isWrite() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

isWrite() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

isWrite() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

J

Job - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

Job() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

job - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent_

JobEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

Holds information about a job that is sent from the services layer to the back-end layer.

JobEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

JobEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

JobEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity_

JobEvent - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

An event associated with a job.

JobEvent() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent

JobEvent_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

JobEvent_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent_

JobEventComparator - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

JobEventComparator() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEventComparator

jobEvents - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity_

JobFilter - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

A communication class used by the service layer to send filter criteria to the ETL layer for job status retrieval tasks.

JobFilter(Long, Long, String, Date, Date) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobFilter

Create an instance with the given parameters.

JobFilter(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobFilter

Creates a filter by parsing the given string for the needed values.

JobListRow - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

A communication bean to transfer information about a job status.

JobListRow() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

JobRequest - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

JobRequest() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobRequest

jobs - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity_

JobSpec - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

Hold information about a user's file upload.

JobSpec() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

JobStatus - Enum in edu.emory.cci.aiw.cvrg.eureka.common.entity

The different types of job events that are recorded.

K

key - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity_

keyAlgorithm - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CipherEncryptionAlgorithm_

keyId - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams_

L

lastLogin - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity_

lastModified - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity_

lastName - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity_

LdapUser - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

LdapUser() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.LdapUser

LdapUserEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

LdapUserEntity(LoginTypeEntity, AuthenticationMethodEntity) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.LdapUserEntity

LdapUserEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.LdapUserEntity

LdapUserEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

LdapUserEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.LdapUserEntity_

LdapUserRequest - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

LdapUserRequest() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.LdapUserRequest

leftNode - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.BinaryOperatorEntity_

lhsExtendedPhenotype - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation_

lhsExtendedPhenotype_relations - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype_

Link - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

Link() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.Link

LinkEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

LinkEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.LinkEntity

LinkEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

LinkEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.LinkEntity_

links - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity_

Literal - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

Literal() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.Literal

LiteralEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

LiteralEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.LiteralEntity

LiteralEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

LiteralEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.LiteralEntity_

LocalUser - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

LocalUser() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUser

LocalUserEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

LocalUserEntity(LoginTypeEntity, AuthenticationMethodEntity) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.LocalUserEntity

LocalUserEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.LocalUserEntity

LocalUserEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

LocalUserEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.LocalUserEntity_

LocalUserRequest - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

LocalUserRequest() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUserRequest

LoginType - Enum in edu.emory.cci.aiw.cvrg.eureka.common.authentication

LoginType - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

LoginType() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.LoginType

loginType - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity_

LoginTypeEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

LoginTypeEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.LoginTypeEntity

LoginTypeEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

LoginTypeEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.LoginTypeEntity_

LowLevelAbstractionJsonDeserializer - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

LowLevelAbstractionJsonDeserializer() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.LowLevelAbstractionJsonDeserializer

LowLevelAbstractionJsonSerializer - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

LowLevelAbstractionJsonSerializer() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.LowLevelAbstractionJsonSerializer

M

manageCTotalNum - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

maxDuration - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype_

maxDurationTimeUnit - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype_

maxf1s2 - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation_

maxf1s2TimeUnit - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation_

maxs1f2 - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation_

maxs1f2TimeUnit - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation_

maxTValueThreshold - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity_

maxUnits - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity_

maxValueComp - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity_

maxValueThreshold - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity_

md5(String) - Static method in class edu.emory.cci.aiw.cvrg.eureka.common.util.StringUtil

Create an MD5 hash from the given string.

members - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CategoryEntity_

mergeOnUpdate - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

message - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent_

MessageDigestEncryptionAlgorithm - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

MessageDigestEncryptionAlgorithm() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.MessageDigestEncryptionAlgorithm

MessageDigestEncryptionAlgorithm_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

MessageDigestEncryptionAlgorithm_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.MessageDigestEncryptionAlgorithm_

messages() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

Return a list of messages generated by the job.

metaConnect - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

metaPassword - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

metaRemoveMethod - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

metaTableName - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

metaUser - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

minDuration - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype_

minDurationTimeUnit - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype_

minf1s2 - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation_

minf1s2TimeUnit - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation_

mins1f2 - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation_

mins1f2TimeUnit - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation_

minTValueThreshold - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity_

minUnits - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity_

minValueComp - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity_

minValueThreshold - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity_

modifierSpecs - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity_

N

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthenticationMethodEntity_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EncryptionAlgorithm_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EtlGroup_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyType_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationIntervalSide_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationRemoveMethod_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationValueTypeCode_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LiteralEntity_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LoginTypeEntity_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthProvider_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Role_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigEntity_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ThresholdsOperator_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.TimeUnit_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator_

nameToUnit(String) - Static method in class edu.emory.cci.aiw.cvrg.eureka.common.json.AbsoluteTimeUnitMixin

Neo4jDestination - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

Neo4jDestination() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.Neo4jDestination

Neo4jDestinationEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

Neo4jDestinationEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.Neo4jDestinationEntity

Neo4jDestinationEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

Neo4jDestinationEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.Neo4jDestinationEntity_

Node - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

Node() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.Node

node - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CohortEntity_

node - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UnaryOperatorEntity_

NodeEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

NodeEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.NodeEntity

NodeEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

NodeEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.NodeEntity_

NodeToNodeEntityVisitor - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

NodeToNodeEntityVisitor() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.NodeToNodeEntityVisitor

NodeVisitor - Interface in edu.emory.cci.aiw.cvrg.eureka.common.comm

NominalValueMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

NominalValueMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.NominalValueMixin

NotRecordedSourceIdMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

NotRecordedSourceIdMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.NotRecordedSourceIdMixin

NumberValueMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

NumberValueMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.NumberValueMixin

O

OAuthProvider - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

OAuthProvider() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthProvider

oauthProvider - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthUserEntity_

OAuthProvider_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

OAuthProvider_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthProvider_

OAuthUser - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

OAuthUser() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.OAuthUser

OAuthUserEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

OAuthUserEntity(LoginTypeEntity, AuthenticationMethodEntity) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthUserEntity

OAuthUserEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthUserEntity

OAuthUserEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

OAuthUserEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthUserEntity_

OAuthUserRequest - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

OAuthUserRequest() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.OAuthUserRequest

ObjectMapperProvider - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

Provides custom JSON serialization/deserialization from proposition definitions and other objects.

ObjectMapperProvider() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.ObjectMapperProvider

offset - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams_

offsets - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity_

onCycleDetected(CycleRecoverable.Context) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent

onCycleDetected(CycleRecoverable.Context) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

onCycleDetected(CycleRecoverable.Context) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Role

op - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.BinaryOperatorEntity_

op - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UnaryOperatorEntity_

organization - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity_

outputName - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity_

outputType - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity_

owner - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity_

owner - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigEntity_

P

password - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LocalUserEntity_

PasswordChangeRequest - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

PasswordChangeRequest() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.PasswordChangeRequest

passwordExpiration - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LocalUserEntity_

patientDimensionBirthdate - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

patientDimensionDeathDate - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

patientDimensionGender - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

patientDimensionLanguage - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

patientDimensionMaritalStatus - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

patientDimensionMRN - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

patientDimensionRace - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

patientDimensionReligion - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

patientDimensionVital - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

patientDimensionZipCode - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

PatientSet - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

PatientSet() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.PatientSet

PatientSetExtractorDestination - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

PatientSetExtractorDestination() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.PatientSetExtractorDestination

PatientSetExtractorDestinationEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

PatientSetExtractorDestinationEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.PatientSetExtractorDestinationEntity

PatientSetExtractorDestinationEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

PatientSetExtractorDestinationEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.PatientSetExtractorDestinationEntity_

Phenotype - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

A user-created phenotype from the UI.

Phenotype(Phenotype.Type) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

Phenotype.Type - Enum in edu.emory.cci.aiw.cvrg.eureka.common.comm

phenotypeEntity - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype_

PhenotypeEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

Holds information about a user-defined ontological concept.

PhenotypeEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

PhenotypeEntity(CategoryEntity.CategoryType) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

PhenotypeEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

PhenotypeEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity_

PhenotypeEntityVisitor - Interface in edu.emory.cci.aiw.cvrg.eureka.common.entity

PhenotypeField - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

PhenotypeField() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

PhenotypeField(Phenotype) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

PhenotypeHandlingException - Exception in edu.emory.cci.aiw.cvrg.eureka.common.exception

PhenotypeHandlingException(Response.Status, String) - Constructor for exception edu.emory.cci.aiw.cvrg.eureka.common.exception.PhenotypeHandlingException

PhenotypeHandlingException(Response.Status, String, Throwable) - Constructor for exception edu.emory.cci.aiw.cvrg.eureka.common.exception.PhenotypeHandlingException

PhenotypeHandlingException(Response.Status, Throwable) - Constructor for exception edu.emory.cci.aiw.cvrg.eureka.common.exception.PhenotypeHandlingException

PhenotypeVisitable - Interface in edu.emory.cci.aiw.cvrg.eureka.common.comm

PhenotypeVisitor - Interface in edu.emory.cci.aiw.cvrg.eureka.common.comm

primaryExtendedPhenotype - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SequenceEntity_

PrimitiveParameterMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

PrimitiveParameterMixin(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.PrimitiveParameterMixin

printParams(Map<String, String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.config.AbstractJerseyServletModule

printParams(Map<String, String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.config.AbstractServletModule

property - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity_

property - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity_

property - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity_

propertyConstraint - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype_

PropertyConstraint - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

PropertyConstraint() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropertyConstraint

PropertyConstraint_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

PropertyConstraint_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropertyConstraint_

PropertyMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

PropertyMixin(String, String, String, ValueType, String, String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.PropertyMixin

propertyName - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropertyConstraint_

proposition - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity_

PropositionChildrenVisitor - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

PropositionChildrenVisitor() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropositionChildrenVisitor

PropositionEntityVisitable - Interface in edu.emory.cci.aiw.cvrg.eureka.common.entity

PropositionMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

PropositionMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.PropositionMixin

PropositionTypeVisitor - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

PropositionTypeVisitor() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropositionTypeVisitor

PropositionWrapper - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

Represents messages containing phenotype definitions.

PropositionWrapper() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Creates the message object.

PropositionWrapper.Type - Enum in edu.emory.cci.aiw.cvrg.eureka.common.comm

providerFirstName - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

providerFullName - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

providerLastName - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

providerMiddleName - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

providerUsername - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthUserEntity_

proxyDelete(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

proxyGet(String, MultivaluedMap) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

proxyPost(String, String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

proxyPut(String, String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

PublicUrlGenerator - Class in edu.emory.cci.aiw.cvrg.eureka.common.props

Generates Eureka!'s best guess at the public URL based on a servlet request and the machine hostname.

PublicUrlGenerator() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.props.PublicUrlGenerator

R

rank - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EncryptionAlgorithm_

rank - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyType_

rank - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationIntervalSide_

rank - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationRemoveMethod_

rank - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationValueTypeCode_

rank - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator_

rank - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.TimeUnit_

rank - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator_

reference - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity_

reference - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity_

ReferenceMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

ReferenceMixin(String, String, String[]) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.ReferenceMixin

refresh(T) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.dao.Dao

Refreshes the given entity instance with latest information from the data store.

refresh(T) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.dao.GenericDao

RelatedPhenotypeField - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

RelatedPhenotypeField() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.RelatedPhenotypeField

Relation - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

Relation() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

Relation_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

Relation_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation_

RelationMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

RelationMixin(Integer, Unit, Integer, Unit, Integer, Unit, Integer, Unit, Integer, Unit, Integer, Unit, Integer, Unit, Integer, Unit) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.RelationMixin

relationOperator - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation_

RelationOperator - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

RelationOperator() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator

relationOperator - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity_

RelationOperator.Type - Enum in edu.emory.cci.aiw.cvrg.eureka.common.entity

RelationOperator_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

RelationOperator_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator_

relations - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SequenceEntity_

remove(T) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.dao.Dao

Removes the given entity from the data store.

remove(T) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.dao.GenericDao

removeJobEvent(JobEvent) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

resetPassword(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

retrieve(PK) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.dao.Dao

Retrieves the entity referred to by the unique identifier from the data store.

retrieve(PK) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.dao.GenericDao

rewritten(String, String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.AbstractWebResourceWrapper

rewritten(String, String, MultivaluedMap<String, String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.AbstractWebResourceWrapper

rewritten(String, String, MultivaluedMap<String, String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.cassupport.CasWebResourceWrapper

rewritten(String, String) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.WebResourceWrapper

rewritten(String, String, MultivaluedMap<String, String>) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.WebResourceWrapper

rhsExtendedPhenotype - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation_

rhsExtendedPhenotype_relations - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype_

rightNode - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.BinaryOperatorEntity_

Role - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

A bean class to hold information related to roles in the system.

Role() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.Role

Create an empty role.

Role_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

Role_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.Role_

roles - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity_

RolesFilter - Class in edu.emory.cci.aiw.cvrg.eureka.common.filter

A filter to fetch roles from a database, and assign them to the current principal.

RolesFilter() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.filter.RolesFilter

RolesRequestWrapper - Class in edu.emory.cci.aiw.cvrg.eureka.common.filter

Wraps an HttpServletRequest object, so that roles for the principal can be implemented.

RolesRequestWrapper(HttpServletRequest, Principal, Set<String>) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.filter.RolesRequestWrapper

Create a wrapper with the given principal, role assigned to that principal, and the original request.

rootNodeName - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

S

salt - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams_

saveUserPhenotype(Phenotype) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

SearchFilter - Class in edu.emory.cci.aiw.cvrg.eureka.common.filter

SearchFilter(List<String>) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.filter.SearchFilter

Section() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig.Section

Sequence - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

Container class for the sequence user-created phenotype from the UI.

Sequence() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.Sequence

SequenceEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

Contains attributes which describe a Protempa high level abstraction.

SequenceEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.SequenceEntity

SequenceEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

SequenceEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.SequenceEntity_

SequentialTemporalPatternDefinitionMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

SequentialTemporalPatternDefinitionMixin(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.SequentialTemporalPatternDefinitionMixin

serialize(CompoundLowLevelAbstractionDefinition, JsonGenerator, SerializerProvider) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.CompoundLowLevelAbstractionJsonSerializer

serialize(HighLevelAbstractionDefinition, JsonGenerator, SerializerProvider) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.HighLevelAbstractionJsonSerializer

serialize(LowLevelAbstractionDefinition, JsonGenerator, SerializerProvider) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.LowLevelAbstractionJsonSerializer

serialize(SliceDefinition, JsonGenerator, SerializerProvider) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.json.SliceAbstractionJsonSerializer

ServicesClient - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm.clients

ServicesClient(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

setAbbrevDisplayName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Sets the phenotype definition's abbreviated display name.

setAbstractedFrom(PhenotypeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

setAcceptedMimetypes(String[]) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.FileSourceConfigOption

setAcceptedMimetypes(String[]) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigParams.Upload

setActive(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

setActive(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Set whether the user is active or not.

setAgeConceptCodePrefix(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setAiwUrl(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesLinks

Sets the aiwSiteUrl.

setAlgorithm(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.MessageDigestEncryptionAlgorithm

setAlgorithmSourceBackends(SourceConfig.Section[]) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

setAliasFieldName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PatientSetExtractorDestinationEntity

setAliasFieldNameProperty(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PatientSetExtractorDestinationEntity

setAliasPatientIdProperty(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PatientSetExtractorDestinationEntity

setAliasPropositionId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlPatientSetExtractorDestination

setAliasPropositionId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PatientSetExtractorDestination

setAliasPropositionId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PatientSetExtractorDestinationEntity

setAllowingQueryPropositionIds(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

setAlreadyLoaded(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity

setAppPropertiesLinks(AppPropertiesLinks) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppProperties

Sets the links status.

setAppPropertiesModes(AppPropertiesModes) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppProperties

Sets the modes status.

setAppPropertiesRegistration(AppPropertiesRegistration) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppProperties

Sets the registration status.

setAtLeast(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

setCategoricalType(Category.CategoricalType) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Category

setCategoricalType(Category.CategoricalType) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

setCategoryType(CategoryEntity.CategoryType) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CategoryEntity

setCatType(CategoryEntity.CategoryType) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

setChildren(List<PhenotypeField>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Category

setChildren(List<PropositionWrapper>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Sets this phenotype definition's children.

setChildren(List<SystemPhenotype>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SystemPhenotype

setChildrenToParents(Map<String, String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Statistics

setCipherAlgorithm(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CipherEncryptionAlgorithm

setCipherKey(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams

setCodePrefix(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity

setCohort(Cohort) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.CohortDestination

setCohort(Cohort) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlCohortDestination

setCohort(CohortEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CohortDestinationEntity

setComplement(ValueComparator) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator

setConceptCodePrefix(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

setConceptSpec(I2B2DestinationConceptSpecEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity

setConceptSpecs(List<I2B2DestinationConceptSpecEntity>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setConsecutive(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

setCount(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

setCounts(Map<String, Integer>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Statistics

setCreated(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

setCreated(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Sets the creation date of this phenotype definition.

setCreated(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

setCreated(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

setCreated(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

Sets the creation time.

setCreated(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

setCreatedAt(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

setCreatedAt(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

setCreatedAt(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

setDataConnect(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setDataPassword(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setDataRemoveMethod(I2B2DestinationRemoveMethod) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setDataSourceBackends(SourceConfig.Section[]) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

setDataSpecs(List<I2B2DestinationDataSpecEntity>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setDataUser(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setDateRangePhenotypeKey(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

setDbHome(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Neo4jDestinationEntity

setDbPath(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlNeo4jDestination

setDbPath(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Neo4jDestination

setDefault(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EncryptionAlgorithm

setDefault(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyType

setDefault(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationIntervalSide

setDefault(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationRemoveMethod

setDefault(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationValueTypeCode

setDefault(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator

setDefault(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.TimeUnit

setDefaultRole(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Role

Set the role's default flag.

setDeidentificationEnabled(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

setDemoMode(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesModes

Sets the demoMode status.

setDepartment(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

setDepartment(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Set the user's department.

setDepartment(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Set the user's Department.

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AuthenticationMethod

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LoginType

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigOption

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthenticationMethodEntity

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EncryptionAlgorithm

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyType

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationIntervalSide

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationRemoveMethod

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationValueTypeCode

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LoginTypeEntity

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthProvider

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

Sets the phenotype's description.

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ThresholdsOperator

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.TimeUnit

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator

setDestination(DestinationEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams

setDestination(DestinationEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership

setDestination(I2B2DestinationEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity

setDestination(I2B2DestinationEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

setDestination(DestinationEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

setDestination(DestinationEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LinkEntity

setDestinationId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

setDestinationId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

setDestinationId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

setDestinations(List<DestinationEntity>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity

setDestinations(List<DestinationGroupMembership>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EtlGroup

setDisplayName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Link

setDisplayName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

setDisplayName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Sets the phenotype definition's display name.

setDisplayName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig.Section

setDisplayName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

setDisplayName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigOption

setDisplayName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LinkEntity

setDisplayName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

Sets the display name of the phenotype.

setEarliestDate(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

setEarliestDateSide(Interval.Side) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

setEffectiveAt(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

setEmail(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

setEmail(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Set the user's email address.

setEmail(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Set the user's email address.

setEncryptionAlgorithm(EncryptionAlgorithm) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

setEphiProhibited(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesModes

Sets the ephiProhibited status.

setExceptionStackTrace(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent

setExecute(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

setExecute(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

setExecute(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

setExpiredAt(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

setExtendedPhenotypes(List<ExtendedPhenotype>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

setExtendedProposition(ExtendedPhenotype) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

setFinish(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Literal

setFinish(I2B2DestinationIntervalSide) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

setFinish(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LiteralEntity

setFinishedDate(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

setFirstName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

setFirstName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Set the user's first name.

setFirstName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Set the user's first name.

setFrequencyType(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

setFrequencyType(FrequencyType) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

setFullName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

setFullName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

setFullName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

setGetStatisticsSupported(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

setGetStatisticsSupported(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

setGetStatisticsSupported(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

setGetStatisticsSupported(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

setGitHubOAuthKey(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

setGitHubOAuthSecret(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

setGlobusOAuthKey(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

setGlobusOAuthSecret(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

setGoogleOAuthKey(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

setGoogleOAuthSecret(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

setGroup(EtlGroup) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership

setGroup(EtlGroup) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership

setGroupExecute(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership

setGroupExecute(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership

setGroupRead(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership

setGroupRead(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership

setGroups(List<EtlGroup>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity

setGroups(List<DestinationGroupMembership>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

setGroups(List<SourceConfigGroupMembership>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigEntity

setGroupWrite(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership

setGroupWrite(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership

setHasDuration(Boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

setHasPropertyConstraint(Boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

setHelpSiteUrl(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesLinks

Sets the helpSiteUrl.

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AuthenticationMethod

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AuthorizedUser

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Cohort

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

Set the unique identifier for the configuration.

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

Set the unique identifier for the configuration.

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LoginType

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Node

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Sets a user phenotype definition's id.

setId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig.Section

setId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

setId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigParams

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Set the user's unique identifier.

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthenticationMethodEntity

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity

Set the user's unique identifier.

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CohortEntity

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationGroupMembership

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EncryptionAlgorithm

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EtlGroup

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyType

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationIntervalSide

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationRemoveMethod

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationValueTypeCode

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

Set the unique identifier for the job request.

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LinkEntity

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LoginTypeEntity

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.NodeEntity

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthProvider

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

Sets the unique identifier for the phenotype.

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropertyConstraint

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Role

Set the role's identification number.

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigEntity

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ThresholdsOperator

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.TimeUnit

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Set the user's unique identifier.

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

setInSystem(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

setInSystem(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Sets whether this phenotype definition is a aystem or user data element definition.

setInSystem(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

Sets whether the proposition is a system level element.

setInternalNode(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

setIsConsecutive(Boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

setIsWithin(Boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

setJob(JobEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent

setJobConceptListSupported(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

setJobEvents(List<JobEvent>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

Sets job events, assumed in order of occurrence.

setJobEvents(List<JobEvent>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

setJobId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

setJobs(List<JobEntity>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity

setJobSpec(JobSpec) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobRequest

setKey(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

setKey(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Sets a system phenotype definition's id string.

setKey(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

Sets the key for the phenotype.

setKeyAlgorithm(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CipherEncryptionAlgorithm

setKeyId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams

setKnowledgeSourceBackends(SourceConfig.Section[]) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

setLastLogin(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

setLastLogin(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Set the user's last log-in date.

setLastModified(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

setLastModified(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Sets the last modified date of this phenotype definition.

setLastModified(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

Sets the last modification time.

setLastName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

setLastName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Set the user's last name.

setLastName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Set the user's last name.

setLatestDate(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

setLatestDateSide(Interval.Side) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

setLeftNode(Node) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.BinaryOperator

setLeftNode(NodeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.BinaryOperatorEntity

setLhsExtendedPhenotype(ExtendedPhenotype) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

setLinks(List<Link>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

setLinks(List<Link>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

setLinks(List<Link>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

setLinks(List<Link>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

setLinks(List<LinkEntity>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

setLocalAccountRegistrationEnabled(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

Sets the localAccountRegistrationEnabled status.

setLoginType(LoginType) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

setLoginType(LoginType) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

setLowerComp(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

setLowerUnits(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

setLowerValue(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

setManageCTotalNum(Boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setMaxDuration(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

setMaxDuration(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype

setMaxDurationTimeUnit(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype

setMaxDurationUnits(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

setMaxf1s2(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

setMaxf1s2TimeUnit(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

setMaxs1f2(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

setMaxs1f2TimeUnit(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

setMaxTValueThreshold(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

setMaxUnits(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

setMaxValueComp(ValueComparator) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

setMaxValueThreshold(BigDecimal) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

setMembers(List<PhenotypeEntity>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CategoryEntity

setMergeOnUpdate(Boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setMessage(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent

setMessages(List<String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

setMetaConnect(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setMetaPassword(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setMetaRemoveMethod(I2B2DestinationRemoveMethod) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setMetaTableName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setMetaUser(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setMinDuration(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

setMinDuration(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype

setMinDurationTimeUnit(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype

setMinDurationUnits(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

setMinf1s2(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

setMinf1s2TimeUnit(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

setMins1f2(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

setMins1f2TimeUnit(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

setMinTValueThreshold(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

setMinUnits(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

setMinValueComp(ValueComparator) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

setMinValueThreshold(BigDecimal) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

setModifierSpecs(List<I2B2DestinationModifierSpecEntity>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity

setName(AuthenticationMethod) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AuthenticationMethod

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Literal

setName(LoginType) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LoginType

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PatientSet

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigOption

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigParams

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigParams.Upload

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThresholds

setName(AuthenticationMethod) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthenticationMethodEntity

setName(String) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.entity.ConfigEntity

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EncryptionAlgorithm

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EtlGroup

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyType

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationIntervalSide

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationRemoveMethod

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationValueTypeCode

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LiteralEntity

setName(LoginType) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LoginTypeEntity

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthProvider

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Role

Set the role's name.

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigEntity

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ThresholdsOperator

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.TimeUnit

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator

setNewPassword(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PasswordChangeRequest

setNode(Node) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Cohort

setNode(Node) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UnaryOperator

setNode(NodeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CohortEntity

setNode(NodeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UnaryOperatorEntity

setNumberOfKeys(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Statistics

setOAuthProvider(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.OAuthUser

setOAuthProvider(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.OAuthUserRequest

setOAuthProvider(OAuthProvider) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthUserEntity

setOffset(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams

setOffsets(List<DeidPerPatientParams>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

setOldPassword(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PasswordChangeRequest

setOp(BinaryOperator.Op) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.BinaryOperator

setOp(UnaryOperator.Op) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UnaryOperator

setOp(BinaryOperator.Op) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.BinaryOperatorEntity

setOp(UnaryOperator.Op) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UnaryOperatorEntity

setOptions(SourceConfigOption[]) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig.Section

setOrganization(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

setOrganization(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Set the user's organization.

setOrganization(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Set the user's organization.

setOrganizationName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesLinks

Sets the organizationName.

setOutputName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

setOutputType(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

setOwner(AuthorizedUserEntity) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.entity.ConfigEntity

setOwner(AuthorizedUserEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntity

setOwner(AuthorizedUserEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigEntity

setOwnerUserId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

Set the unique identifier for the owner of the configuration.

setOwnerUserId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

Set the unique identifier for the owner of the configuration.

setOwnerUsername(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

setParent(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Sets whether this phenotype definition has children.

setParent(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SystemPhenotype

setPassword(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUser

setPassword(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUserRequest

Set the user's password.

setPassword(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LocalUserEntity

Set the user's password.

setPasswordExpiration(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUser

setPasswordExpiration(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LocalUserEntity

Set the user's password expiration date.

setPatientDimensionBirthdate(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setPatientDimensionDeathDate(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setPatientDimensionGender(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setPatientDimensionLanguage(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setPatientDimensionMaritalStatus(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setPatientDimensionMRN(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setPatientDimensionRace(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setPatientDimensionReligion(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setPatientDimensionVital(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setPatientDimensionZipCode(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setPatients(Set<String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PatientSet

setPhenotype(PhenotypeField) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

setPhenotype(PhenotypeField) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

setPhenotypeDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

setPhenotypeDisplayName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

setPhenotypeEntity(PhenotypeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype

setPhenotypeField(PhenotypeField) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.RelatedPhenotypeField

setPhenotypeFields(PhenotypeField[]) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

setPhenotypeFields(PhenotypeField[]) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

setPhenotypeKey(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

setPrimaryExtendedPhenotype(ExtendedPhenotype) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SequenceEntity

setPrimaryPhenotype(PhenotypeField) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Sequence

setPrompt(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigOption

setPrompts(SourceConfig) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

setProperties(List<String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Sets this phenotype definition's properties.

setProperties(List<String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SystemPhenotype

setProperty(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

setProperty(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity

setProperty(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

setProperty(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity

setPropertyConstraint(PropertyConstraint) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype

setPropertyName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropertyConstraint

setPropertyType(BackendPropertyType) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigOption

setPropertyValue(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

setProposition(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity

setPropositionIds(List<String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

setPropositionIdsToShow(List<String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobRequest

setPropositions(List<PropositionDefinition>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValidationRequest

setProviderFirstName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setProviderFullName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setProviderLastName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setProviderMiddleName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setProviderUsername(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.OAuthUser

setProviderUsername(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.OAuthUserRequest

setProviderUsername(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.OAuthUserEntity

setRank(int) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EncryptionAlgorithm

setRank(int) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyType

setRank(int) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationIntervalSide

setRank(int) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationRemoveMethod

setRank(int) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationValueTypeCode

setRank(int) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator

setRank(int) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.TimeUnit

setRank(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator

setRead(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

setRead(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

setRead(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

setReference(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity

setReference(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

setRelatedPhenotypes(List<RelatedPhenotypeField>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Sequence

setRelatedPhenotypes(List<PhenotypeField>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

setRelationMaxCount(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.RelatedPhenotypeField

setRelationMaxUnits(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.RelatedPhenotypeField

setRelationMinCount(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.RelatedPhenotypeField

setRelationMinUnits(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.RelatedPhenotypeField

setRelationOperator(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.RelatedPhenotypeField

setRelationOperator(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

setRelationOperator(RelationOperator) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

setRelationOperator(RelationOperator) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

setRelations(List<Relation>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SequenceEntity

setRequired(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigOption

setRequired(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigParams.Upload

setRequiredConcepts(List<String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

setRequiredPropositionIds(List<String>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

setRhsExtendedPhenotype(ExtendedPhenotype) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

setRightNode(Node) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.BinaryOperator

setRightNode(NodeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.BinaryOperatorEntity

setRoles(List<Long>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

setRoles(List<Role>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Set the roles assigned to the current user.

setRootNodeName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setSalt(byte[]) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.DeidPerPatientParams

setSampleUrl(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigParams.Upload

setSequentialPhenotype(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.RelatedPhenotypeField

setSequentialPhenotypeSource(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.RelatedPhenotypeField

setSkipDemographicsHierarchy(Boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setSkipProviderHierarchy(Boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setSourceConfig(SourceConfigEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership

setSourceConfigId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

setSourceConfigId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

setSourceConfigId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

setSourceConfigId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

Set the unique identifier of the configuration to be used for the job request.

setSourceConfigs(List<SourceConfigEntity>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity

setSourceConfigs(List<SourceConfigGroupMembership>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EtlGroup

setSourceId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigParams.Upload

setSourceSystemCode(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setStart(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Literal

setStart(I2B2DestinationIntervalSide) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

setStart(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LiteralEntity

setStartedDate(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

setStatus(JobStatus) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

setStatus(JobStatus) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobListRow

setStatus(JobStatus) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent

setSummarized(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

setSummarized(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Sets whether or not the children of this proposition are included in the message.

setSupportUri(SupportUri) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesLinks

Sets the supportUri.

setSystemType(SystemProposition.SystemType) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SystemPhenotype

setSystemType(SystemProposition.SystemType) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SystemProposition

setTargetProposition(PropositionDefinition) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValidationRequest

setTermSourceBackends(SourceConfig.Section[]) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

setThreshold(ValueComparator.Threshold) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator

setThresholdsOperator(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThresholds

setThresholdsOperator(ThresholdsOperator) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdGroupEntity

setTimestamp(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

setTimeStamp(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent

setTitle(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

setTitle(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Set the user's title

setTitle(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Set the user's title.

setTwitterOAuthKey(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

setTwitterOAuthSecret(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration

setType(Phenotype.Type) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

setType(PropositionWrapper.Type) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Sets the type of a user phenotype definition.

setType(RelationOperator.Type) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator

setUnits(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity

setUpdatedAt(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

setUpdatedAt(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

setUpdateData(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobSpec

setupFilters() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.config.AbstractServletModule

Override to setup additional filters.

setUploads(SourceConfigParams.Upload[]) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigParams

setUpperComp(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

setUpperUnits(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

setUpperValue(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

setupServlets() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.config.AbstractServletModule

setUrl(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Link

setUrl(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LinkEntity

setUser(AuthorizedUserEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

Set the unique identifier for the user who submitted the request.

setUserId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

setUserId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Sets a user phenotype definition's user id.

setUserId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValidationRequest

setUserId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

Sets the user to which this phenotype belongs.

setUsername(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AuthorizedUser

setUsername(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

setUsername(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PatientSet

setUsername(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

setUsername(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Sets the user's unique username.

setUsername(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity

Set the user's email address.

setUsername(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

setUserPropositions(List<PropositionDefinition>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobRequest

setUsers(List<AuthorizedUserEntity>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EtlGroup

setVal(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity

setValue(Object) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigOption

setValue(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropertyConstraint

setValueComparator(ValueComparator) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropertyConstraint

setValueThresholds(List<ValueThreshold>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThresholds

setValueThresholds(List<ValueThresholdEntity>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdGroupEntity

setValueTypeCode(I2B2DestinationValueTypeCode) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity

setVerificationCode(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUser

setVerificationCode(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LocalUserEntity

setVerified(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUser

setVerified(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LocalUserEntity

Set whether the user has been verified.

setVerifyEmail(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Set the user's email address verification.

setVerifyPassword(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUserRequest

Set the password verification.

setVisitDimension(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setVisitDimensionId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setVisitDimensionInOut(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity

setWithinAtLeast(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

setWithinAtLeast(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

setWithinAtLeast(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

setWithinAtLeast(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

setWithinAtLeastUnit(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

setWithinAtLeastUnits(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

setWithinAtLeastUnits(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

setWithinAtLeastUnits(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

setWithinAtMost(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

setWithinAtMost(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

setWithinAtMost(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

setWithinAtMost(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

setWithinAtMostUnit(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

setWithinAtMostUnits(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

setWithinAtMostUnits(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

setWithinAtMostUnits(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

setWrite(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

setWrite(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

setWrite(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

skipDemographicsHierarchy - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

skipProviderHierarchy - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

SliceAbstractionJsonDeserializer - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

SliceAbstractionJsonDeserializer() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.SliceAbstractionJsonDeserializer

SliceAbstractionJsonSerializer - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

SliceAbstractionJsonSerializer() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.SliceAbstractionJsonSerializer

SourceConfig - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

SourceConfig() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

sourceConfig - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership_

SourceConfig.Section - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

SourceConfigEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

SourceConfigEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigEntity

SourceConfigEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

SourceConfigEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigEntity_

SourceConfigGroupMembership - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

SourceConfigGroupMembership() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership

SourceConfigGroupMembership_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

SourceConfigGroupMembership_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.SourceConfigGroupMembership_

sourceConfigId - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity_

SourceConfigOption - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

SourceConfigOption() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigOption

SourceConfigOptionValueDeserializer - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

Acts like the default deserializer for untyped objects, except if the default deserializer returns an Integer, convert into a Long.

SourceConfigOptionValueDeserializer() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.SourceConfigOptionValueDeserializer

SourceConfigParams - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

SourceConfigParams() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigParams

SourceConfigParams.Upload - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

sourceConfigs - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity_

sourceConfigs - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EtlGroup_

SourceIdMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

SourceIdMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.SourceIdMixin

sourceSystemCode - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

start - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity_

start - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LiteralEntity_

Statistics - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

Statistics() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.Statistics

status - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent_

StringUtil - Class in edu.emory.cci.aiw.cvrg.eureka.common.util

Provide string related methods.

StringUtil() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.util.StringUtil

submitJob(JobSpec) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

SubsequentTemporalExtendedPropositionDefinitionMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

SubsequentTemporalExtendedPropositionDefinitionMixin(Relation, TemporalExtendedPropositionDefinition) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.SubsequentTemporalExtendedPropositionDefinitionMixin

SupportUri - Class in edu.emory.cci.aiw.cvrg.eureka.common.props

SystemPhenotype - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

SystemPhenotype() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.SystemPhenotype

SystemProposition - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

SystemProposition() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.SystemProposition

SystemProposition.SystemType - Enum in edu.emory.cci.aiw.cvrg.eureka.common.entity

SystemProposition_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

SystemProposition_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.SystemProposition_

systemType - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SystemProposition_

T

TemporalExtendedParameterMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

TemporalExtendedParameterMixin(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.TemporalExtendedParameterMixin

TemporalExtendedPropositionMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

TemporalExtendedPropositionMixin(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.TemporalExtendedPropositionMixin

threshold - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator_

ThresholdsOperator - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

ThresholdsOperator() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.ThresholdsOperator

thresholdsOperator - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdGroupEntity_

ThresholdsOperator_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

ThresholdsOperator_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.ThresholdsOperator_

timeStamp - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent_

TimeUnit - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

TimeUnit() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.TimeUnit

TimeUnit_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

TimeUnit_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.TimeUnit_

title - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity_

toAuthenticationMethod() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthenticationMethodEntity

toCohort() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CohortEntity

toJob() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

toJobListRow() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

toLink() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LinkEntity

toLoginType() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LoginTypeEntity

toNode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.BinaryOperatorEntity

toNode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LiteralEntity

toNode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.NodeEntity

toNode() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UnaryOperatorEntity

toQueryParam() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.JobFilter

Convert the filter object into a string appropriate to be passed as a request parameter.

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.AuthenticationMethod

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.BinaryOperator

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Category

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Cohort

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Destination

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestination

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Frequency

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Job

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Literal

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LoginType

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Node

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PatientSet

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeField

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper

Represents field values for debugging purposes.

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.RelatedPhenotypeField

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.Sequence

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfig

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.SystemPhenotype

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UnaryOperator

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThresholds

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthenticationMethodEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CategoryEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.CipherEncryptionAlgorithm

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EncryptionAlgorithm

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ExtendedPhenotype

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyType

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationIntervalSide

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationRemoveMethod

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationValueTypeCode

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LoginTypeEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.MessageDigestEncryptionAlgorithm

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropertyConstraint

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Relation

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.Role

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SequenceEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.SystemProposition

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ThresholdsOperator

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.TimeUnit

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdGroupEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.props.SupportUri

type - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator_

U

UnaryOperator - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

UnaryOperator() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.UnaryOperator

UnaryOperator.Op - Enum in edu.emory.cci.aiw.cvrg.eureka.common.comm

UnaryOperatorEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

UnaryOperatorEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.UnaryOperatorEntity

UnaryOperatorEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

UnaryOperatorEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.UnaryOperatorEntity_

UnitMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

UnitMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.UnitMixin

units - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationDataSpecEntity_

update(T) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.dao.Dao

Updates the data store using the given entity.

update(T) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.dao.GenericDao

updateDestination(Destination) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

updateUser(User, Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

updateUserPhenotype(Long, Phenotype) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

upload(String, String, String, InputStream) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

Upload() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.SourceConfigParams.Upload

UriSourceConfigOption - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

UriSourceConfigOption() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.UriSourceConfigOption

url - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LinkEntity_

User - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

User() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

user - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEntity_

UserEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

A bean class to hold information about users in the system.

UserEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

Create an empty User object.

UserEntity(LoginTypeEntity, AuthenticationMethodEntity) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity

UserEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

UserEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity_

UserEntityToUserVisitor - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

UserEntityToUserVisitor() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntityToUserVisitor

UserEntityVisitable - Interface in edu.emory.cci.aiw.cvrg.eureka.common.entity

UserEntityVisitor - Interface in edu.emory.cci.aiw.cvrg.eureka.common.entity

userId - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity_

username - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AuthorizedUserEntity_

username - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntity_

UserPrincipalAttributes - Class in edu.emory.cci.aiw.cvrg.eureka.common.authentication

UserPrincipalAttributes() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.authentication.UserPrincipalAttributes

UserRequest - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

A bean holding information about a user's registration request.

UserRequest() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Default constructor, calls super()

userRequestToAuthenticationMethod(UserRequest) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.authentication.AuthenticationMethod

UserRequestVisitable - Interface in edu.emory.cci.aiw.cvrg.eureka.common.comm

UserRequestVisitor - Interface in edu.emory.cci.aiw.cvrg.eureka.common.comm

users - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.EtlGroup_

UserSupport - Interface in edu.emory.cci.aiw.cvrg.eureka.common.authentication

userToAuthenticationMethod(User) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.authentication.AuthenticationMethod

UserVisitable - Interface in edu.emory.cci.aiw.cvrg.eureka.common.comm

UserVisitor - Interface in edu.emory.cci.aiw.cvrg.eureka.common.comm

V

val - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationModifierSpecEntity_

validate() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUser

validate() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.LocalUserRequest

validate() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.OAuthUser

validate() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.OAuthUserRequest

validate() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.User

Validate a User object.

validate() - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequest

Validate a UserRequest object.

ValidationRequest - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

ValidationRequest() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValidationRequest

value - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropertyConstraint_

valueComparator - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropertyConstraint_

ValueComparator - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

ValueComparator() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator

ValueComparator.Threshold - Enum in edu.emory.cci.aiw.cvrg.eureka.common.entity

ValueComparator_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

ValueComparator_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator_

ValueMixin - Class in edu.emory.cci.aiw.cvrg.eureka.common.json

ValueMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.json.ValueMixin

valueOf(String) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.authentication.AuthenticationMethod

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.authentication.LoginType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration.OAuths

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.comm.BinaryOperator.Op

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.comm.Category.CategoricalType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.comm.DestinationType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype.Type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper.Type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.comm.UnaryOperator.Op

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.dao.GenericDao.SqlComparator

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.entity.CategoryEntity.CategoryType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.entity.JobStatus

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator.Type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.entity.SystemProposition.SystemType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator.Threshold

Returns the enum constant of this type with the specified name.

values() - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.authentication.AuthenticationMethod

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.authentication.LoginType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.comm.AppPropertiesRegistration.OAuths

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.comm.BinaryOperator.Op

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.comm.Category.CategoricalType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.comm.DestinationType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.comm.Phenotype.Type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.comm.PropositionWrapper.Type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.comm.UnaryOperator.Op

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.dao.GenericDao.SqlComparator

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.entity.CategoryEntity.CategoryType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.entity.JobStatus

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.entity.RelationOperator.Type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.entity.SystemProposition.SystemType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueComparator.Threshold

Returns an array containing the constants of this enum type, in the order they are declared.

ValueThreshold - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

ValueThreshold() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThreshold

ValueThresholdEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

Represents a Protempa allowed value for a org.protempa .LowLevelAbstraction

ValueThresholdEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity

ValueThresholdEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

ValueThresholdEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity_

ValueThresholdGroupEntity - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

Contains attributes which describe a Protempa low-level abstraction in the context of the Eureka! UI.

ValueThresholdGroupEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdGroupEntity

ValueThresholdGroupEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.common.entity

ValueThresholdGroupEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdGroupEntity_

ValueThresholds - Class in edu.emory.cci.aiw.cvrg.eureka.common.comm

ValueThresholds() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.common.comm.ValueThresholds

valueThresholds - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdGroupEntity_

valueTypeCode - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationConceptSpecEntity_

verificationCode - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LocalUserEntity_

verified - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.LocalUserEntity_

verifyUser(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.comm.clients.ServicesClient

visit(CohortDestination) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.DestinationVisitor

visit(I2B2Destination) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.DestinationVisitor

visit(Neo4jDestination) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.DestinationVisitor

visit(PatientSetExtractorDestination) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.DestinationVisitor

visit(EtlCohortDestination) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestinationVisitor

visit(EtlI2B2Destination) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestinationVisitor

visit(EtlNeo4jDestination) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestinationVisitor

visit(EtlPatientSetExtractorDestination) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.EtlDestinationVisitor

visit(Literal) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.NodeVisitor

visit(UnaryOperator) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.NodeVisitor

visit(BinaryOperator) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.NodeVisitor

visit(SystemPhenotype) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeVisitor

visit(Category) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeVisitor

visit(Sequence) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeVisitor

visit(Frequency) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeVisitor

visit(ValueThresholds) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.PhenotypeVisitor

visit(LocalUserRequest) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequestVisitor

Processes a local user request entity.

visit(LdapUserRequest) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequestVisitor

Processes an LDAP user request entity.

visit(OAuthUserRequest) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.UserRequestVisitor

Processes an OAuth user request entity.

visit(LocalUser) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.UserVisitor

Processes a local user entity.

visit(LdapUser) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.UserVisitor

Processes an LDAP user entity.

visit(OAuthUser) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.comm.UserVisitor

Processes an OAuth user entity.

visit(SystemProposition) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AbstractPhenotypeEntityVisitor

visit(CategoryEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AbstractPhenotypeEntityVisitor

visit(SequenceEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AbstractPhenotypeEntityVisitor

visit(ValueThresholdGroupEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AbstractPhenotypeEntityVisitor

visit(FrequencyEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.AbstractPhenotypeEntityVisitor

visit(CohortDestinationEntity) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntityVisitor

visit(I2B2DestinationEntity) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntityVisitor

visit(Neo4jDestinationEntity) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntityVisitor

visit(PatientSetExtractorDestinationEntity) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.entity.DestinationEntityVisitor

visit(Literal) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.NodeToNodeEntityVisitor

visit(UnaryOperator) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.NodeToNodeEntityVisitor

visit(BinaryOperator) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.NodeToNodeEntityVisitor

visit(SystemProposition) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntityVisitor

visit(CategoryEntity) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntityVisitor

visit(SequenceEntity) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntityVisitor

visit(ValueThresholdGroupEntity) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntityVisitor

visit(FrequencyEntity) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntityVisitor

visit(SystemProposition) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropositionChildrenVisitor

visit(CategoryEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropositionChildrenVisitor

visit(SequenceEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropositionChildrenVisitor

visit(ValueThresholdGroupEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropositionChildrenVisitor

visit(FrequencyEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropositionChildrenVisitor

visit(SystemProposition) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropositionTypeVisitor

visit(CategoryEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropositionTypeVisitor

visit(SequenceEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropositionTypeVisitor

visit(ValueThresholdGroupEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropositionTypeVisitor

visit(FrequencyEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PropositionTypeVisitor

visit(Collection<? extends UserEntity>) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntityToUserVisitor

visit(LocalUserEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntityToUserVisitor

visit(LdapUserEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntityToUserVisitor

visit(OAuthUserEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntityToUserVisitor

visit(LocalUserEntity) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntityVisitor

Processes a local user entity.

visit(LdapUserEntity) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntityVisitor

Processes an LDAP user entity.

visit(OAuthUserEntity) - Method in interface edu.emory.cci.aiw.cvrg.eureka.common.entity.UserEntityVisitor

Processes an OAuth user entity.

visitDimension - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

visitDimensionId - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

visitDimensionInOut - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.I2B2DestinationEntity_

W

WebResourceWrapper - Interface in edu.emory.cci.aiw.cvrg.eureka.common.comm.clients

WebResourceWrapperFactory - Interface in edu.emory.cci.aiw.cvrg.eureka.common.comm.clients

withinAtLeast - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity_

withinAtLeast - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity_

withinAtLeastUnits - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity_

withinAtLeastUnits - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity_

withinAtMost - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity_

withinAtMost - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity_

withinAtMostUnits - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.FrequencyEntity_

withinAtMostUnits - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.ValueThresholdEntity_

Z

zDescription - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.PhenotypeEntity_

zExceptionStackTrace - Static variable in class edu.emory.cci.aiw.cvrg.eureka.common.entity.JobEvent_

A B C D E F G H I J K L M N O P R S T U V W Z