Uses of Interface
org.protempa.KnowledgeSource

Packages that use KnowledgeSource

Package	Description
org.protempa
org.protempa.backend.dsb
org.protempa.dest
org.protempa.dest.deid
org.protempa.dest.keyloader
org.protempa.dest.map
org.protempa.dest.proplist
org.protempa.dest.table
org.protempa.dest.xml
org.protempa.query
org.protempa.xml

Uses of KnowledgeSource in org.protempa

Classes in org.protempa that implement KnowledgeSource

Modifier and Type	Class and Description
class	KnowledgeSourceImpl A read-only "interface" to an externally-maintained knowledge base.

Methods in org.protempa that return KnowledgeSource

Modifier and Type	Method and Description
KnowledgeSource	Protempa.getKnowledgeSource() Gets the knowledge source.
KnowledgeSource	KnowledgeSourceUpdatedEvent.getProtempaSource()
KnowledgeSource	SourceFactory.newKnowledgeSourceInstance()

Methods in org.protempa with parameters of type KnowledgeSource

Modifier and Type	Method and Description
KnowledgeSourceCache	KnowledgeSourceCacheFactory.getInstance(KnowledgeSource ks, Collection<PropositionDefinition> cache, boolean collectValueSets)

Constructors in org.protempa with parameters of type KnowledgeSource

Constructor and Description
KnowledgeSourceUpdatedEvent(KnowledgeSource knowledgeSource) Constructs an event with the source KnowledgeSource that generated the event.
Protempa(DataSource dataSource, KnowledgeSource knowledgeSource, AlgorithmSource algorithmSource, TermSource termSource) Constructor that configures PROTEMPA not to cache found abstract parameters.
Protempa(DataSource dataSource, KnowledgeSource knowledgeSource, AlgorithmSource algorithmSource, TermSource termSource, boolean cacheFoundAbstractParameters) Constructor that lets the user specify whether or not to cache found abstract parameters.

Uses of KnowledgeSource in org.protempa.backend.dsb

Methods in org.protempa.backend.dsb with parameters of type KnowledgeSource

Modifier and Type	Method and Description
void	DataSourceBackend.validateConfiguration(KnowledgeSource knowledgeSource)
DataValidationEvent[]	DataSourceBackend.validateData(KnowledgeSource knowledgeSource)

Uses of KnowledgeSource in org.protempa.dest

Methods in org.protempa.dest with parameters of type KnowledgeSource

Modifier and Type	Method and Description
QueryResultsHandler	Destination.getQueryResultsHandler(Query query, DataSource dataSource, KnowledgeSource knowledgeSource) Performs any initialization required for the query results handler's configuration.
String[]	Destination.getSupportedPropositionIds(DataSource dataSource, KnowledgeSource knowledgeSource) Infers from the query results handler's specification what propositions this query results handler supports in its output.
String[]	AbstractDestination.getSupportedPropositionIds(DataSource dataSource, KnowledgeSource knowledgeSource)

Uses of KnowledgeSource in org.protempa.dest.deid

Methods in org.protempa.dest.deid with parameters of type KnowledgeSource

Modifier and Type	Method and Description
QueryResultsHandler	DeidentifiedDestination.getQueryResultsHandler(Query query, DataSource dataSource, KnowledgeSource knowledgeSource)
String[]	DeidentifiedDestination.getSupportedPropositionIds(DataSource dataSource, KnowledgeSource knowledgeSource)

Uses of KnowledgeSource in org.protempa.dest.keyloader

Methods in org.protempa.dest.keyloader with parameters of type KnowledgeSource

Modifier and Type	Method and Description
QueryResultsHandler	KeyLoaderDestination.getQueryResultsHandler(Query query, DataSource dataSource, KnowledgeSource knowledgeSource)
String[]	KeyLoaderDestination.getSupportedPropositionIds(DataSource dataSource, KnowledgeSource knowledgeSource)
void	Criteria.init(KnowledgeSource knowledgeSource)

Uses of KnowledgeSource in org.protempa.dest.map

Methods in org.protempa.dest.map with parameters of type KnowledgeSource

Modifier and Type	Method and Description
QueryResultsHandler	MapDestination.getQueryResultsHandler(Query query, DataSource dataSource, KnowledgeSource knowledgeSource)

Uses of KnowledgeSource in org.protempa.dest.proplist

Methods in org.protempa.dest.proplist with parameters of type KnowledgeSource

Modifier and Type	Method and Description
QueryResultsHandler	PropositionListDestination.getQueryResultsHandler(Query query, DataSource dataSource, KnowledgeSource knowledgeSource)

Uses of KnowledgeSource in org.protempa.dest.table

Methods in org.protempa.dest.table with parameters of type KnowledgeSource

Modifier and Type	Method and Description
String[]	TableColumnSpec.columnNames(KnowledgeSource knowledgeSource) Gets the names of the columns representing one instance of a proposition or property.
String[]	PropositionValueColumnSpec.columnNames(KnowledgeSource knowledgeSource)
String[]	PropositionColumnSpec.columnNames(KnowledgeSource knowledgeSource)
String[]	DistanceBetweenColumnSpec.columnNames(KnowledgeSource knowledgeSource)
String[]	CountColumnSpec.columnNames(KnowledgeSource knowledgeSource)
String[]	AtLeastNColumnSpec.columnNames(KnowledgeSource knowledgeSource)
String[]	TableColumnSpec.getInferredPropositionIds(KnowledgeSource knowledgeSource, String[] inPropIds) Infers the ids of the propositions corresponding to the contents of this column.
String[]	Reference.getInferredPropositionIds(KnowledgeSource knowledgeSource, String[] inPropIds)
String[]	PropositionValueColumnSpec.getInferredPropositionIds(KnowledgeSource knowledgeSource, String[] inPropIds)
String[]	PropositionColumnSpec.getInferredPropositionIds(KnowledgeSource knowledgeSource, String[] inPropIds)
abstract String[]	Link.getInferredPropositionIds(KnowledgeSource knowledgeSource, String[] inPropIds) Aggregates and returns the possible proposition ids on the right-hand side of the link.
String[]	DistanceBetweenColumnSpec.getInferredPropositionIds(KnowledgeSource knowledgeSource, String[] inPropIds)
String[]	Derivation.getInferredPropositionIds(KnowledgeSource knowledgeSource, String[] inPropIds)
String[]	CountColumnSpec.getInferredPropositionIds(KnowledgeSource knowledgeSource, String[] inPropIds)
String[]	AtLeastNColumnSpec.getInferredPropositionIds(KnowledgeSource knowledgeSource, String[] inPropIds)
TableQueryResultsHandler	TableDestination.getQueryResultsHandler(Query query, DataSource dataSource, KnowledgeSource knowledgeSource)
String[]	TableDestination.getSupportedPropositionIds(DataSource dataSource, KnowledgeSource knowledgeSource) Infers a list of propositions to populate all of the specified columns.
void	TableColumnSpec.validate(KnowledgeSource knowledgeSource) Validates the fields of this column specification against the knowledge source.
void	PropositionValueColumnSpec.validate(KnowledgeSource knowledgeSource)
void	PropositionColumnSpec.validate(KnowledgeSource knowledgeSource)
void	DistanceBetweenColumnSpec.validate(KnowledgeSource knowledgeSource)
void	CountColumnSpec.validate(KnowledgeSource knowledgeSource)
void	AtLeastNColumnSpec.validate(KnowledgeSource knowledgeSource)

Uses of KnowledgeSource in org.protempa.dest.xml

Methods in org.protempa.dest.xml with parameters of type KnowledgeSource

Modifier and Type	Method and Description
QueryResultsHandler	XmlDestination.getQueryResultsHandler(Query query, DataSource dataSource, KnowledgeSource knowledgeSource)
String[]	XmlDestination.getSupportedPropositionIds(DataSource dataSource, KnowledgeSource knowledgeSource) Returns the proposition ids specified in the constructor.

Constructors in org.protempa.dest.xml with parameters of type KnowledgeSource

Constructor and Description
XmlPropositionVisitor(KnowledgeSource ks)

Uses of KnowledgeSource in org.protempa.query

Methods in org.protempa.query with parameters of type KnowledgeSource

Modifier and Type	Method and Description
Query	QueryBuilder.build(KnowledgeSource knowledgeSource, AlgorithmSource algorithmSource) Builds a Query.
Query	DefaultQueryBuilder.build(KnowledgeSource knowledgeSource, AlgorithmSource algorithmSource)

Uses of KnowledgeSource in org.protempa.xml

Methods in org.protempa.xml with parameters of type KnowledgeSource

Modifier and Type	Method and Description
Query	XMLConfiguration.build(KnowledgeSource knowledgeSource, AlgorithmSource algorithmSource)
static Query	XMLConfiguration.readQueryAsXML(File file, KnowledgeSource knowledgeSource, AlgorithmSource algorithmSource) Read XML from the specified file that describes a Protempa query and create the query.
static Query	XMLConfiguration.readQueryAsXML(InputStream inputStream, KnowledgeSource knowledgeSource, AlgorithmSource algorithmSource) Read XML from the specified input stream that describes a Protempa query and create the query.
static Query	XMLConfiguration.readQueryAsXML(Reader reader, KnowledgeSource knowledgeSource, AlgorithmSource algorithmSource) Read XML from the specified Reader that describes a Protempa query and create the query.
static Query	XMLConfiguration.readQueryAsXML(String str, KnowledgeSource knowledgeSource, AlgorithmSource algorithmSource) Read XML from the specified string that describes a Protempa query and create the query.
static Query	XMLConfiguration.readQueryAsXML(URL url, KnowledgeSource knowledgeSource, AlgorithmSource algorithmSource) Read XML from the specified URL that describes a Protempa query and create the query.
static TableDestination	XMLConfiguration.readTableQueryResultsHandlerAsXML(InputStream inputStream, BufferedWriter dataWriter, KnowledgeSource knowledgeSource) Read XML from the specified InputStream that describes a Protempa TableQueryResultsHandler and create the TableQueryResultsHandler.
static TableDestination	XMLConfiguration.readTableQueryResultsHandlerAsXML(Reader reader, BufferedWriter dataWriter, KnowledgeSource knowledgeSource) Read XML from the specified Reader that describes a Protempa TableQueryResultsHandler and create the TableQueryResultsHandler.
static TableDestination	XMLConfiguration.readTableQueryResultsHandlerAsXML(String str, BufferedWriter dataWriter, KnowledgeSource knowledgeSource) Read XML from the specified string that describes a Protempa TableQueryResultsHandler and create the TableQueryResultsHandler.
static TableDestination	XMLConfiguration.readTableQueryResultsHandlerAsXML(URL url, BufferedWriter dataWriter, KnowledgeSource knowledgeSource) Read XML from the specified URL that describes a Protempa TableQueryResultsHandler and create the TableQueryResultsHandler.
static TableDestination	XMLConfiguration.readTableQueryResultsHandlerFactoryAsXML(File file, BufferedWriter dataWriter, KnowledgeSource knowledgeSource) Read XML from the specified file that describes a Protempa TableQueryResultsHandler and create the TableQueryResultsHandler.
static void	XMLConfiguration.writeTableDestinationAsXML(TableDestination destination, File file, boolean surpressSchemaReference, KnowledgeSource knowledgeSource) Write the given TableDestination query to the specified file.
static void	XMLConfiguration.writeTableDestinationAsXML(TableDestination destination, File file, KnowledgeSource knowledgeSource) Write the given TableDestination query to the specified file.
static void	XMLConfiguration.writeTableDestinationAsXML(TableDestination destination, Writer writer, boolean surpressSchemaReference, KnowledgeSource knowledgeSource) Write the given TableDestination query using the specified Writer.