Uses of Package
org.protempa

Packages that use org.protempa

Package	Description
org.protempa
org.protempa.backend
org.protempa.backend.asb
org.protempa.backend.asb.java
org.protempa.backend.dsb
org.protempa.backend.ksb
org.protempa.backend.tsb
org.protempa.cli
org.protempa.dest
org.protempa.dest.deid
org.protempa.dest.keyloader
org.protempa.dest.map
org.protempa.dest.proplist
org.protempa.dest.table
org.protempa.dest.xml
org.protempa.proposition
org.protempa.proposition.visitor
org.protempa.query
org.protempa.valueset
org.protempa.xml

Classes in org.protempa used by org.protempa

Class and Description
AbstractAbstractionDefinition Definition of the constraints required to infer an abstract parameter.
AbstractionDefinition Interface to definitions of the constraints required to infer an abstract parameter.
AbstractPropositionDefinition Abstract base class for all knowledge definition classes.
AbstractSource
Algorithm Interface to algorithms for processing primitive parameters.
AlgorithmArguments Stores arguments to be passed into an algorithm for a given low-level abstraction value definition.
AlgorithmInitializationException Thrown when an error occurs in algorithm initialization.
AlgorithmParameter Definition of an algorithm parameter.
AlgorithmProcessingException Throws when an error occurs in algorithm processing.
Algorithms The set of defined algorithms.
AlgorithmSource
AlgorithmSourceException Thrown when an error occurs in algorithm initialization or processing.
AlgorithmSourceReadException Thrown when an error occurs reading an algorithm.
Attribute
AttributeBuilder
BackendListener Common interface for backend listeners.
CloseException
CompoundLowLevelAbstractionDefinition An abstraction for representing compound low-level abstractions.
CompoundLowLevelAbstractionDefinition.ValueDefinitionMatchOperator The different ways to consider the low-level abstraction value rules in a given interval
ConstantDefinition
ContextDefinition A context is a state of affairs that, when interpreted over a time interval, can change the interpretation of data or abstractions.
ContextOffset
DataSource
DataSourceBackendException Abstract class for exceptions that are thrown when an error occurs calling the data source.
DataSourceBackendSourceSystem
DataSourceException Abstract class for exceptions that are thrown when an error occurs calling the data source.
DataSourceFailedConfigurationValidationException
DataSourceFailedDataValidationException
DataSourceReadException Thrown when there is an error retrieving data from the data source.
DataSourceValidationIncompleteException Thrown if an error occurred during validation that prevented its completion.
DataSourceWriteException Thrown when there is an error retrieving data from the data source.
DataStreamingEvent
DataStreamingEventIterator An iterator-like interface for iterating over DataStreamingEvents.
DefaultSourceId
DefaultSourceIdBuilder
EventDefinition Defines external acts upon an entity such as a patient.
ExtendedPropositionDefinition
GapFunction A convenience class for implementing gap functions.
HighLevelAbstractionDefinition Definition of an extended parameter that's a high-level abstraction.
KeySetSpec
KnowledgeSource
KnowledgeSourceCache
KnowledgeSourceException
KnowledgeSourceReadException
LowLevelAbstractionDefinition Definition of low-level abstraction.
LowLevelAbstractionValueDefinition
MalformedTermIdException
MultiplexingDataStreamingEventIterator Iterator-like access to DataStreamingEvents.
NotRecordedSourceId
ParameterDefinition
PrimitiveParameterDefinition Defines measurable or observable time-stamped data types.
PropertyConstraint
PropertyDefinition Defines a property of a proposition definition.
PropositionDefinition Foundation type for all objects that go in a Knowledge Base.
PropositionDefinitionCheckedVisitable Interface for accepting a proposition definition visitor.
PropositionDefinitionCheckedVisitor Interface for classes that do processing on abstraction definitions and may throw an exception.
PropositionDefinitionVisitable Interface for accepting a proposition definition visitor.
PropositionDefinitionVisitor Interface for classes that do processing on abstraction definitions.
Protempa Main PROTEMPA API.
ProtempaException Base class for PROTEMPA checked exceptions.
ProtempaStartupException Exception for errors that occur when PROTEMPA is being initialized.
ProtempaUtil.PropositionDefinitionDisplayNameComparator.Style For specifying which display name style to use.
QueryException Thrown when a Protempa query fails.
QueryResults.QueryResultsEntry
QuerySession Models a query followed by data exploration.
ReferenceDefinition Defines a proposition definition's references.
SequentialTemporalPatternDefinition
SequentialTemporalPatternDefinition.SubsequentTemporalExtendedPropositionDefinition
SliceDefinition
SlidingWindowWidthMode For specifying whether a low-level abstraction definition's or aggregation definition's sliding window width should be the algorithm's default (DEFAULT), the entire width of a time series (ALL), or a specified minimum and maximum number of values (RANGE).
Source
SourceClosedUnexpectedlyEvent
SourceCloseException Class for exceptions that are thrown when an error occurs while closing a data, knowledge, algorithm or term source.
SourceFactory
SourceId Interface for classes that specify the source of proposition definitions and value sets.
SourceIdBuilder
SourceIdFactory
SourceListener Listener interface for when the source changes.
SourceSystem
SourceUpdatedEvent Source updated events.
TemporalExtendedParameterDefinition
TemporalExtendedPropositionDefinition
TemporalPatternOffset Defines offsets for the interval of an abstract parameter defined by a complex abstract parameter definition.
TemporalPropositionDefinition
Term Represents a term pulled from a terminology in PROTEMPA.
Terminology Represents a terminology in PROTEMPA
TermSource
TermSourceException
TermSourceReadException
TermSubsumption
UniqueIdPair
ValueClassification

Classes in org.protempa used by org.protempa.backend

Class and Description
BackendCloseException Abstract class for exceptions that are thrown when an error occurs calling the data source.
BackendListener Common interface for backend listeners.
ProtempaException Base class for PROTEMPA checked exceptions.
SourceId Interface for classes that specify the source of proposition definitions and value sets.

Classes in org.protempa used by org.protempa.backend.asb

Class and Description
Algorithm Interface to algorithms for processing primitive parameters.
Algorithms The set of defined algorithms.
AlgorithmSourceReadException Thrown when an error occurs reading an algorithm.

Classes in org.protempa used by org.protempa.backend.asb.java

Class and Description
AbstractAlgorithm Provides a skeletal implementation of the Algorithm interface.
Algorithm Interface to algorithms for processing primitive parameters.
AlgorithmArguments Stores arguments to be passed into an algorithm for a given low-level abstraction value definition.
Algorithms The set of defined algorithms.
AlgorithmSourceReadException Thrown when an error occurs reading an algorithm.

Classes in org.protempa used by org.protempa.backend.dsb

Class and Description
BackendCloseException Abstract class for exceptions that are thrown when an error occurs calling the data source.
DataSourceBackendSourceSystem
DataSourceReadException Thrown when there is an error retrieving data from the data source.
DataSourceWriteException Thrown when there is an error retrieving data from the data source.
DataStreamingEventIterator An iterator-like interface for iterating over DataStreamingEvents.
KeySetSpec
KnowledgeSource
KnowledgeSourceReadException
QuerySession Models a query followed by data exploration.

Classes in org.protempa used by org.protempa.backend.ksb

Class and Description
AbstractionDefinition Interface to definitions of the constraints required to infer an abstract parameter.
ContextDefinition A context is a state of affairs that, when interpreted over a time interval, can change the interpretation of data or abstractions.
KnowledgeSourceReadException
PropositionDefinition Foundation type for all objects that go in a Knowledge Base.
TemporalPropositionDefinition
TermSubsumption

Classes in org.protempa used by org.protempa.backend.tsb

Class and Description
Term Represents a term pulled from a terminology in PROTEMPA.
TermSourceReadException

Classes in org.protempa used by org.protempa.cli

Class and Description
CloseException
Protempa Main PROTEMPA API.
ProtempaException Base class for PROTEMPA checked exceptions.
ProtempaStartupException Exception for errors that occur when PROTEMPA is being initialized.

Classes in org.protempa used by org.protempa.dest

Class and Description
DataSource
KnowledgeSource
PropositionDefinition Foundation type for all objects that go in a Knowledge Base.
ProtempaException Base class for PROTEMPA checked exceptions.

Classes in org.protempa used by org.protempa.dest.deid

Class and Description
DataSource
KnowledgeSource
PropositionDefinition Foundation type for all objects that go in a Knowledge Base.
ProtempaException Base class for PROTEMPA checked exceptions.

Classes in org.protempa used by org.protempa.dest.keyloader

Class and Description
DataSource
KnowledgeSource
PropositionDefinition Foundation type for all objects that go in a Knowledge Base.
ProtempaException Base class for PROTEMPA checked exceptions.

Classes in org.protempa used by org.protempa.dest.map

Class and Description
DataSource
KnowledgeSource

Classes in org.protempa used by org.protempa.dest.proplist

Class and Description
DataSource
KnowledgeSource

Classes in org.protempa used by org.protempa.dest.table

Class and Description
DataSource
KnowledgeSource
KnowledgeSourceCache
KnowledgeSourceReadException
PropositionDefinition Foundation type for all objects that go in a Knowledge Base.
ProtempaException Base class for PROTEMPA checked exceptions.

Classes in org.protempa used by org.protempa.dest.xml

Class and Description
DataSource
KnowledgeSource
PropositionDefinition Foundation type for all objects that go in a Knowledge Base.
ProtempaException Base class for PROTEMPA checked exceptions.

Classes in org.protempa used by org.protempa.proposition

Class and Description
ProtempaException Base class for PROTEMPA checked exceptions.
SourceSystem

Classes in org.protempa used by org.protempa.proposition.visitor

Class and Description
ProtempaException Base class for PROTEMPA checked exceptions.

Classes in org.protempa used by org.protempa.query

Class and Description
AlgorithmSource
KnowledgeSource
PropositionDefinition Foundation type for all objects that go in a Knowledge Base.
ProtempaException Base class for PROTEMPA checked exceptions.

Classes in org.protempa used by org.protempa.valueset

Class and Description
Attribute
AttributeBuilder
SourceId Interface for classes that specify the source of proposition definitions and value sets.
SourceIdBuilder

Classes in org.protempa used by org.protempa.xml

Class and Description
AlgorithmSource
KnowledgeSource