org.protempa.cli

Class ValidateDataSource

java.lang.Object

org.protempa.cli.CLI

org.protempa.cli.ValidateDataSource

public class ValidateDataSource
extends CLI

Validates the data source for consistency between the knowledge source and the database mappings.

Author:

Andrew Post

Nested Class Summary

Nested classes/interfaces inherited from class org.protempa.cli.CLI

CLI.Argument

Constructor Summary

Constructors

Constructor and Description
ValidateDataSource()

Method Summary

Modifier and Type	Method and Description
void	execute(Protempa protempa, org.apache.commons.cli.CommandLine commandLine) Implemented with whatever is done with the instance of PROTEMPA created with #initialize(java.lang.String), and processing of any arguments and command line options specified in CLI.addCustomCliOptions(org.apache.commons.cli.Options).
static void	main(String[] args)

Methods inherited from class org.protempa.cli.CLI

addCustomCliOptions, close, execute, getArguments, getShellCommand, initialize, initializeExecuteAndClose, isConfigurationIdEnabled, printException, processOptionsAndArgs

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ValidateDataSource

public ValidateDataSource()

Method Detail

execute

public void execute(Protempa protempa,
                    org.apache.commons.cli.CommandLine commandLine)
             throws CLIException

Description copied from class: CLI

Implemented with whatever is done with the instance of PROTEMPA created with #initialize(java.lang.String), and processing of any arguments and command line options specified in CLI.addCustomCliOptions(org.apache.commons.cli.Options). The default implementation is a no-op.

Overrides:

execute in class CLI

Parameters:

protempa - an instance of Protempa.

commandLine - the CommandLine options passed in by the caller.

Throws:

CLIException - if some exception was thrown by the implementation of this method. The convention is for any such exceptions to be nested in an instance of CLIException.

main

public static void main(String[] args)