Uses of Class
org.protempa.KnowledgeSourceReadException

Packages that use KnowledgeSourceReadException

Package	Description
org.protempa
org.protempa.backend.dsb
org.protempa.backend.ksb
org.protempa.dest.table

Uses of KnowledgeSourceReadException in org.protempa

Methods in org.protempa that throw KnowledgeSourceReadException

Modifier and Type	Method and Description
Set<PropositionDefinition>	KnowledgeSourceImpl.collectPropDefDescendantsUsingAllNarrower(boolean inDataSourceOnly, String... propIds)
Set<PropositionDefinition>	KnowledgeSource.collectPropDefDescendantsUsingAllNarrower(boolean inDataSourceOnly, String... propIds)
Set<PropositionDefinition>	KnowledgeSourceImpl.collectPropDefDescendantsUsingInverseIsA(String... propIds)
Set<PropositionDefinition>	KnowledgeSource.collectPropDefDescendantsUsingInverseIsA(String... propIds)
Set<String>	KnowledgeSourceImpl.collectPropIdDescendantsUsingAllNarrower(boolean inDataSourceOnly, String... propIds)
Set<String>	KnowledgeSource.collectPropIdDescendantsUsingAllNarrower(boolean inDataSourceOnly, String... propIds)
Set<String>	KnowledgeSourceImpl.collectPropIdDescendantsUsingInverseIsA(String... propIds)
Set<String>	KnowledgeSource.collectPropIdDescendantsUsingInverseIsA(String... propIds)
KnowledgeSourceCache	KnowledgeSourceCacheFactory.getInstance(KnowledgeSource ks, Collection<PropositionDefinition> cache, boolean collectValueSets)
List<PropositionDefinition>	KnowledgeSourceImpl.getMatchingPropositionDefinitions(String searchKey) Gets the proposition Definitions from each backend that match the searchKey
List<PropositionDefinition>	KnowledgeSource.getMatchingPropositionDefinitions(String searchKey)
List<String>	KnowledgeSourceImpl.getPropositionDefinitionsByTerm(And<TermSubsumption> termSubsumptionClause) Gets the mappings from term IDs to proposition IDs for each backend.
List<String>	KnowledgeSource.getPropositionDefinitionsByTerm(And<TermSubsumption> termSubsumptionClause) Gets the mappings from term IDs to proposition IDs for each backend.
boolean	KnowledgeSourceImpl.hasAbstractionDefinition(String id)
boolean	KnowledgeSource.hasAbstractionDefinition(String id)
boolean	KnowledgeSourceImpl.hasContextDefinition(String id)
boolean	KnowledgeSource.hasContextDefinition(String id)
boolean	KnowledgeSourceImpl.hasPropositionDefinition(String id)
boolean	KnowledgeSource.hasPropositionDefinition(String id)
boolean	KnowledgeSourceImpl.hasTemporalPropositionDefinition(String id)
boolean	KnowledgeSource.hasTemporalPropositionDefinition(String id)
boolean	KnowledgeSourceImpl.hasValueSet(String id)
boolean	KnowledgeSource.hasValueSet(String id)
List<PropositionDefinition>	KnowledgeSourceImpl.readAbstractedFrom(AbstractionDefinition propDef)
List<PropositionDefinition>	KnowledgeSource.readAbstractedFrom(AbstractionDefinition propDef)
List<PropositionDefinition>	KnowledgeSourceImpl.readAbstractedFrom(String id)
List<PropositionDefinition>	KnowledgeSource.readAbstractedFrom(String id)
List<AbstractionDefinition>	KnowledgeSourceImpl.readAbstractedInto(PropositionDefinition propDef)
List<AbstractionDefinition>	KnowledgeSource.readAbstractedInto(PropositionDefinition propDef)
List<AbstractionDefinition>	KnowledgeSourceImpl.readAbstractedInto(String id)
List<AbstractionDefinition>	KnowledgeSource.readAbstractedInto(String propId)
AbstractionDefinition	KnowledgeSourceImpl.readAbstractionDefinition(String id)
AbstractionDefinition	KnowledgeSource.readAbstractionDefinition(String id)
List<AbstractionDefinition>	KnowledgeSourceImpl.readAbstractionDefinitions(String... propIds)
List<AbstractionDefinition>	KnowledgeSource.readAbstractionDefinitions(String... propIds)
ContextDefinition	KnowledgeSourceImpl.readContextDefinition(String id)
ContextDefinition	KnowledgeSource.readContextDefinition(String id)
List<ContextDefinition>	KnowledgeSourceImpl.readContextDefinitions(String... propIds)
List<ContextDefinition>	KnowledgeSource.readContextDefinitions(String... propIds)
List<TemporalPropositionDefinition>	KnowledgeSourceImpl.readInducedBy(ContextDefinition contextDef)
List<TemporalPropositionDefinition>	KnowledgeSource.readInducedBy(ContextDefinition contextDef)
List<TemporalPropositionDefinition>	KnowledgeSourceImpl.readInducedBy(String contextId)
List<TemporalPropositionDefinition>	KnowledgeSource.readInducedBy(String contextId)
List<ContextDefinition>	KnowledgeSourceImpl.readInduces(String id)
List<ContextDefinition>	KnowledgeSource.readInduces(String tempPropDef)
List<ContextDefinition>	KnowledgeSourceImpl.readInduces(TemporalPropositionDefinition propDef)
List<ContextDefinition>	KnowledgeSource.readInduces(TemporalPropositionDefinition tempPropDef)
List<PropositionDefinition>	KnowledgeSourceImpl.readInverseIsA(PropositionDefinition propDef)
List<PropositionDefinition>	KnowledgeSource.readInverseIsA(PropositionDefinition propDef)
List<PropositionDefinition>	KnowledgeSourceImpl.readInverseIsA(String id)
List<PropositionDefinition>	KnowledgeSource.readInverseIsA(String id)
List<PropositionDefinition>	KnowledgeSourceImpl.readIsA(PropositionDefinition propDef)
List<PropositionDefinition>	KnowledgeSource.readIsA(PropositionDefinition propDef)
List<PropositionDefinition>	KnowledgeSourceImpl.readIsA(String id)
List<PropositionDefinition>	KnowledgeSource.readIsA(String id)
List<PropositionDefinition>	KnowledgeSourceImpl.readParents(PropositionDefinition propDef)
List<PropositionDefinition>	KnowledgeSource.readParents(PropositionDefinition propDef)
List<PropositionDefinition>	KnowledgeSourceImpl.readParents(String propId)
List<PropositionDefinition>	KnowledgeSource.readParents(String propId)
PropositionDefinition	KnowledgeSourceImpl.readPropositionDefinition(String id) Returns the specified proposition definition.
PropositionDefinition	KnowledgeSource.readPropositionDefinition(String id) Returns the specified proposition definition.
List<PropositionDefinition>	KnowledgeSourceImpl.readPropositionDefinitions(String... propIds)
List<PropositionDefinition>	KnowledgeSource.readPropositionDefinitions(String... propIds)
List<ContextDefinition>	KnowledgeSourceImpl.readSubContextOfs(ContextDefinition cd)
List<ContextDefinition>	KnowledgeSource.readSubContextOfs(ContextDefinition contextDef)
List<ContextDefinition>	KnowledgeSourceImpl.readSubContextOfs(String id)
List<ContextDefinition>	KnowledgeSource.readSubContextOfs(String id)
List<ContextDefinition>	KnowledgeSourceImpl.readSubContexts(ContextDefinition contextDef)
List<ContextDefinition>	KnowledgeSource.readSubContexts(ContextDefinition contextDef)
List<ContextDefinition>	KnowledgeSourceImpl.readSubContexts(String contextId)
List<ContextDefinition>	KnowledgeSource.readSubContexts(String id)
TemporalPropositionDefinition	KnowledgeSourceImpl.readTemporalPropositionDefinition(String id)
TemporalPropositionDefinition	KnowledgeSource.readTemporalPropositionDefinition(String id)
List<TemporalPropositionDefinition>	KnowledgeSourceImpl.readTemporalPropositionDefinitions(String... propIds)
List<TemporalPropositionDefinition>	KnowledgeSource.readTemporalPropositionDefinitions(String... propIds)
ValueSet	KnowledgeSourceImpl.readValueSet(String id)
ValueSet	KnowledgeSource.readValueSet(String id)

Uses of KnowledgeSourceReadException in org.protempa.backend.dsb

Methods in org.protempa.backend.dsb that throw KnowledgeSourceReadException

Modifier and Type	Method and Description
void	DataSourceBackend.validateConfiguration(KnowledgeSource knowledgeSource)
DataValidationEvent[]	DataSourceBackend.validateData(KnowledgeSource knowledgeSource)

Uses of KnowledgeSourceReadException in org.protempa.backend.ksb

Methods in org.protempa.backend.ksb that throw KnowledgeSourceReadException

Modifier and Type	Method and Description
Collection<PropositionDefinition>	KnowledgeSourceBackend.collectPropDefDescendantsUsingAllNarrower(boolean inDataSourceOnly, String[] propIds)
Collection<PropositionDefinition>	KnowledgeSourceBackend.collectPropDefDescendantsUsingInverseIsA(String[] propIds)
Collection<String>	KnowledgeSourceBackend.collectPropIdDescendantsUsingAllNarrower(boolean inDataSourceOnly, String[] propIds)
Collection<String>	KnowledgeSourceBackend.collectPropIdDescendantsUsingInverseIsA(String[] propIds)
Set<String>	SimpleKnowledgeSourceBackend.getKnowledgeSourceSearchResults(String searchKey)
Set<String>	KnowledgeSourceBackend.getKnowledgeSourceSearchResults(String searchKey)
String[]	KnowledgeSourceBackend.getPropositionsByTerm(String termId) Gets the proposition definitions for a given term.
String[]	AbstractKnowledgeSourceBackend.getPropositionsByTerm(String termId) A default implementation that returns an empty list.
List<String>	KnowledgeSourceBackend.getPropositionsByTermSubsumption(And<TermSubsumption> termSubsumptions) Gets the proposition definitions that are associated with the given AND clause of term subsumptions.
List<String>	AbstractKnowledgeSourceBackend.getPropositionsByTermSubsumption(And<TermSubsumption> termId) A default implementation that returns an empty List.
String[]	KnowledgeSourceBackend.readAbstractedInto(String propId)
AbstractionDefinition	SimpleKnowledgeSourceBackend.readAbstractionDefinition(String id)
AbstractionDefinition	KnowledgeSourceBackend.readAbstractionDefinition(String id)
List<AbstractionDefinition>	SimpleKnowledgeSourceBackend.readAbstractionDefinitions(String[] ids)
List<AbstractionDefinition>	KnowledgeSourceBackend.readAbstractionDefinitions(String[] ids)
ContextDefinition	SimpleKnowledgeSourceBackend.readContextDefinition(String id)
ContextDefinition	KnowledgeSourceBackend.readContextDefinition(String id)
List<ContextDefinition>	SimpleKnowledgeSourceBackend.readContextDefinitions(String[] ids)
List<ContextDefinition>	KnowledgeSourceBackend.readContextDefinitions(String[] toArray)
String[]	SimpleKnowledgeSourceBackend.readInduces(String propId)
String[]	KnowledgeSourceBackend.readInduces(String propId)
String[]	KnowledgeSourceBackend.readIsA(String propId)
PropositionDefinition	SimpleKnowledgeSourceBackend.readPropositionDefinition(String id)
PropositionDefinition	KnowledgeSourceBackend.readPropositionDefinition(String id) Reads a proposition definition into the given PROTEMPA knowledge base.
List<PropositionDefinition>	SimpleKnowledgeSourceBackend.readPropositionDefinitions(String[] ids)
List<PropositionDefinition>	KnowledgeSourceBackend.readPropositionDefinitions(String[] ids)
String[]	SimpleKnowledgeSourceBackend.readSubContextOfs(String propId)
String[]	KnowledgeSourceBackend.readSubContextOfs(String propId)
TemporalPropositionDefinition	SimpleKnowledgeSourceBackend.readTemporalPropositionDefinition(String id)
TemporalPropositionDefinition	KnowledgeSourceBackend.readTemporalPropositionDefinition(String id)
List<TemporalPropositionDefinition>	SimpleKnowledgeSourceBackend.readTemporalPropositionDefinitions(String[] ids)
List<TemporalPropositionDefinition>	KnowledgeSourceBackend.readTemporalPropositionDefinitions(String[] toArray)
ValueSet	KnowledgeSourceBackend.readValueSet(String id) Reads the value set from the knowledge base and returns it.
ValueSet	AbstractKnowledgeSourceBackend.readValueSet(String id) A default implementation that returns null.

Uses of KnowledgeSourceReadException in org.protempa.dest.table

Methods in org.protempa.dest.table that throw KnowledgeSourceReadException

Modifier and Type	Method and Description
String[]	TableColumnSpec.columnNames(KnowledgeSource knowledgeSource) Gets the names of the columns representing one instance of a proposition or property.
String[]	PropositionValueColumnSpec.columnNames(KnowledgeSource knowledgeSource)
String[]	PropositionColumnSpec.columnNames(KnowledgeSource knowledgeSource)
String[]	DistanceBetweenColumnSpec.columnNames(KnowledgeSource knowledgeSource)
String[]	CountColumnSpec.columnNames(KnowledgeSource knowledgeSource)
String[]	AtLeastNColumnSpec.columnNames(KnowledgeSource knowledgeSource)
String[]	TableColumnSpec.getInferredPropositionIds(KnowledgeSource knowledgeSource, String[] inPropIds) Infers the ids of the propositions corresponding to the contents of this column.
String[]	Reference.getInferredPropositionIds(KnowledgeSource knowledgeSource, String[] inPropIds)
String[]	PropositionValueColumnSpec.getInferredPropositionIds(KnowledgeSource knowledgeSource, String[] inPropIds)
String[]	PropositionColumnSpec.getInferredPropositionIds(KnowledgeSource knowledgeSource, String[] inPropIds)
abstract String[]	Link.getInferredPropositionIds(KnowledgeSource knowledgeSource, String[] inPropIds) Aggregates and returns the possible proposition ids on the right-hand side of the link.
String[]	DistanceBetweenColumnSpec.getInferredPropositionIds(KnowledgeSource knowledgeSource, String[] inPropIds)
String[]	Derivation.getInferredPropositionIds(KnowledgeSource knowledgeSource, String[] inPropIds)
String[]	CountColumnSpec.getInferredPropositionIds(KnowledgeSource knowledgeSource, String[] inPropIds)
String[]	AtLeastNColumnSpec.getInferredPropositionIds(KnowledgeSource knowledgeSource, String[] inPropIds)
void	TableColumnSpec.validate(KnowledgeSource knowledgeSource) Validates the fields of this column specification against the knowledge source.
void	PropositionValueColumnSpec.validate(KnowledgeSource knowledgeSource)
void	PropositionColumnSpec.validate(KnowledgeSource knowledgeSource)
void	DistanceBetweenColumnSpec.validate(KnowledgeSource knowledgeSource)
void	CountColumnSpec.validate(KnowledgeSource knowledgeSource)
void	AtLeastNColumnSpec.validate(KnowledgeSource knowledgeSource)

Constructors in org.protempa.dest.table that throw KnowledgeSourceReadException

Constructor and Description
Derivation(String[] propositionIds, PropertyConstraint[] constraints, Comparator<Proposition> comparator, int index, Derivation.Behavior behavior)
Derivation(String[] propositionIds, PropertyConstraint[] constraints, Comparator<Proposition> comparator, int fromIndex, int toIndex, Derivation.Behavior behavior)
Derivation(String[] propositionIds, PropertyConstraint[] constraints, Value[] allowedValues, Derivation.Behavior behavior)