- abbrevDisplayName(Value) - Method in class org.protempa.valueset.ValueSet
-
Returns an abbreviated display name for the specified value, if one is
defined.
- abbrevDisplayNameHeading(String) - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- AbsoluteTimeGranularity - Class in org.protempa.proposition.value
-
Defines absolute time temporal granularities.
- AbsoluteTimeGranularityFactory - Class in org.protempa.proposition.value
-
- AbsoluteTimeGranularityFactory() - Constructor for class org.protempa.proposition.value.AbsoluteTimeGranularityFactory
-
- AbsoluteTimeGranularityUtil - Class in org.protempa.proposition.value
-
- AbsoluteTimeIntervalFactory - Class in org.protempa.proposition.interval
-
Factory for constructing intervals from Java dates.
- AbsoluteTimeIntervalFactory() - Constructor for class org.protempa.proposition.interval.AbsoluteTimeIntervalFactory
-
- AbsoluteTimeUnit - Class in org.protempa.proposition.value
-
Defines units of absolute time.
- AbsoluteTimeUnitFactory - Class in org.protempa.proposition.value
-
- AbsoluteTimeUnitFactory() - Constructor for class org.protempa.proposition.value.AbsoluteTimeUnitFactory
-
- AbstractAbstractionDefinition - Class in org.protempa
-
Definition of the constraints required to infer an abstract parameter.
- AbstractAlgorithm - Class in org.protempa
-
Provides a skeletal implementation of the Algorithm interface.
- AbstractAlgorithm(Algorithms, String) - Constructor for class org.protempa.AbstractAlgorithm
-
- AbstractAlgorithmSourceBackend - Class in org.protempa.backend.asb
-
Skeletal implementation of the
AlgorithmSourceBackend
interface to minimize the effort required to implement it.
- AbstractAlgorithmSourceBackend() - Constructor for class org.protempa.backend.asb.AbstractAlgorithmSourceBackend
-
- AbstractBackend<E extends BackendUpdatedEvent> - Class in org.protempa.backend
-
Common interface for PROTEMPA backends.
- AbstractBackend() - Constructor for class org.protempa.backend.AbstractBackend
-
- AbstractCommonsAlgorithmSourceBackend - Class in org.protempa.backend
-
- AbstractCommonsAlgorithmSourceBackend() - Constructor for class org.protempa.backend.AbstractCommonsAlgorithmSourceBackend
-
- AbstractCommonsDataSourceBackend - Class in org.protempa.backend
-
- AbstractCommonsDataSourceBackend() - Constructor for class org.protempa.backend.AbstractCommonsDataSourceBackend
-
- AbstractCommonsKnowledgeSourceBackend - Class in org.protempa.backend
-
- AbstractCommonsKnowledgeSourceBackend() - Constructor for class org.protempa.backend.AbstractCommonsKnowledgeSourceBackend
-
- AbstractCommonsTermSourceBackend - Class in org.protempa.backend
-
- AbstractCommonsTermSourceBackend() - Constructor for class org.protempa.backend.AbstractCommonsTermSourceBackend
-
- AbstractConfigurations - Class in org.protempa.backend
-
- AbstractConfigurations(BackendProvider) - Constructor for class org.protempa.backend.AbstractConfigurations
-
- AbstractDataSourceBackend - Class in org.protempa.backend.dsb
-
Convenience class for implementing a data source backend.
- AbstractDataSourceBackend() - Constructor for class org.protempa.backend.dsb.AbstractDataSourceBackend
-
- AbstractDataStoreCreator<K,V> - Class in org.protempa.datastore
-
- AbstractDataStoreCreator() - Constructor for class org.protempa.datastore.AbstractDataStoreCreator
-
- AbstractDataStoreCreator(String) - Constructor for class org.protempa.datastore.AbstractDataStoreCreator
-
- AbstractDestination - Class in org.protempa.dest
-
- AbstractDestination() - Constructor for class org.protempa.dest.AbstractDestination
-
- AbstractFilter - Class in org.protempa.backend.dsb.filter
-
An abstract class that makes implementing filters relatively easy.
- AbstractFilter(String[]) - Constructor for class org.protempa.backend.dsb.filter.AbstractFilter
-
Instantiates the filter with the proposition ids that it is valid for.
- AbstractFilterVisitor - Class in org.protempa.backend.dsb.filter
-
- AbstractFilterVisitor() - Constructor for class org.protempa.backend.dsb.filter.AbstractFilterVisitor
-
- AbstractionDefinition - Interface in org.protempa
-
Interface to definitions of the constraints required to infer an abstract
parameter.
- AbstractionDefinitionReadFromBackendEvent - Class in org.protempa
-
- AbstractionDefinitionReadFromBackendEvent(Object) - Constructor for class org.protempa.AbstractionDefinitionReadFromBackendEvent
-
- AbstractJavaAlgorithmBackend - Class in org.protempa.backend.asb.java
-
- AbstractJavaAlgorithmBackend() - Constructor for class org.protempa.backend.asb.java.AbstractJavaAlgorithmBackend
-
- AbstractJavaAlgorithmBackend(BackendInstanceSpec) - Constructor for class org.protempa.backend.asb.java.AbstractJavaAlgorithmBackend
-
- AbstractKaplanMeyer - Class in org.protempa.proposition.stats
-
Calculates length frequencies of temporal propositions.
- AbstractKnowledgeSourceBackend - Class in org.protempa.backend.ksb
-
Skeletal implementation of the KnowledgeSourceBackend interface
to minimize the effort required to implement this interface.
- AbstractKnowledgeSourceBackend() - Constructor for class org.protempa.backend.ksb.AbstractKnowledgeSourceBackend
-
- AbstractParameter - Class in org.protempa.proposition
-
An parameter over an interval.
- AbstractParameter(String, UniqueId) - Constructor for class org.protempa.proposition.AbstractParameter
-
Creates an abstract parameter with an id.
- AbstractParameterFactory - Class in org.protempa
-
FIXME If there are two input propositions of the same type and value, the
behavior is unpredictable (which one it chooses for an offset).
- AbstractParameterIntervalSectioner - Class in org.protempa.proposition
-
- AbstractParameterIntervalSectioner() - Constructor for class org.protempa.proposition.AbstractParameterIntervalSectioner
-
- AbstractProposition - Class in org.protempa.proposition
-
Abstract class for implementing the various kinds of propositions.
- AbstractProposition() - Constructor for class org.protempa.proposition.AbstractProposition
-
Here only for use by deserialization of
Serializable
subclasses of this class.
- AbstractPropositionCheckedVisitor - Class in org.protempa.proposition.visitor
-
- AbstractPropositionCheckedVisitor() - Constructor for class org.protempa.proposition.visitor.AbstractPropositionCheckedVisitor
-
- AbstractPropositionDefinition - Class in org.protempa
-
Abstract base class for all knowledge definition classes.
- AbstractPropositionDefinitionCheckedVisitor - Class in org.protempa
-
An abstract base class for implementing proposition definition visitors that
may throw exceptions.
- AbstractPropositionDefinitionCheckedVisitor() - Constructor for class org.protempa.AbstractPropositionDefinitionCheckedVisitor
-
- AbstractPropositionDefinitionVisitor - Class in org.protempa
-
An abstract base class for implementing proposition definition visitors.
- AbstractPropositionDefinitionVisitor() - Constructor for class org.protempa.AbstractPropositionDefinitionVisitor
-
- AbstractPropositionVisitor - Class in org.protempa.proposition.visitor
-
An abstract base class for implementing proposition visitors.
- AbstractPropositionVisitor() - Constructor for class org.protempa.proposition.visitor.AbstractPropositionVisitor
-
- AbstractQueryResultsHandler - Class in org.protempa.dest
-
- AbstractQueryResultsHandler() - Constructor for class org.protempa.dest.AbstractQueryResultsHandler
-
- AbstractRelativeTimeUnit - Class in org.protempa.proposition.value
-
Base class for relative time units.
- AbstractSource<S extends SourceUpdatedEvent,B extends Backend<T>,E extends SourceUpdatedEvent,T extends BackendUpdatedEvent> - Class in org.protempa
-
- AbstractTableColumnSpec - Class in org.protempa.dest.table
-
- AbstractTableColumnSpec() - Constructor for class org.protempa.dest.table.AbstractTableColumnSpec
-
- AbstractTabularWriter - Class in org.protempa.dest.table
-
- AbstractTermSourceBackend - Class in org.protempa.backend.tsb
-
- AbstractTermSourceBackend() - Constructor for class org.protempa.backend.tsb.AbstractTermSourceBackend
-
- AbstractTimeUnit - Class in org.protempa.proposition.value
-
Base class for defining time units.
- accept(FilterVisitor) - Method in interface org.protempa.backend.dsb.filter.Filter
-
Performs some processing on this filter.
- accept(FilterVisitor) - Method in class org.protempa.backend.dsb.filter.PositionFilter
-
- accept(FilterVisitor) - Method in class org.protempa.backend.dsb.filter.PropertyValueFilter
-
- accept(FilterVisitor) - Method in class org.protempa.backend.dsb.filter.ValueFilter
-
- accept(PropositionDefinitionVisitor) - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
- accept(PropositionDefinitionVisitor) - Method in class org.protempa.ConstantDefinition
-
- accept(PropositionDefinitionVisitor) - Method in class org.protempa.ContextDefinition
-
- accept(PropositionDefinitionVisitor) - Method in class org.protempa.EventDefinition
-
- accept(PropositionDefinitionVisitor) - Method in class org.protempa.HighLevelAbstractionDefinition
-
- accept(PropositionDefinitionVisitor) - Method in class org.protempa.LowLevelAbstractionDefinition
-
- accept(PropositionDefinitionVisitor) - Method in class org.protempa.PrimitiveParameterDefinition
-
- accept(PropositionVisitor) - Method in class org.protempa.proposition.AbstractParameter
-
- accept(PropositionVisitor) - Method in class org.protempa.proposition.Constant
-
- accept(PropositionVisitor) - Method in class org.protempa.proposition.Context
-
- accept(PropositionVisitor) - Method in class org.protempa.proposition.Event
-
- accept(PropositionVisitor) - Method in class org.protempa.proposition.PrimitiveParameter
-
- accept(PropositionVisitor) - Method in class org.protempa.proposition.Sequence
-
- accept(ValueVisitor) - Method in class org.protempa.proposition.value.BooleanValue
-
- accept(ValueVisitor) - Method in class org.protempa.proposition.value.DateValue
-
- accept(ValueVisitor) - Method in class org.protempa.proposition.value.InequalityNumberValue
-
- accept(ValueVisitor) - Method in class org.protempa.proposition.value.NominalValue
-
- accept(ValueVisitor) - Method in class org.protempa.proposition.value.NumberValue
-
- accept(ValueVisitor) - Method in class org.protempa.proposition.value.OrdinalValue
-
- accept(ValueVisitor) - Method in class org.protempa.proposition.value.ValueList
-
- accept(ValueVisitor) - Method in interface org.protempa.proposition.value.ValueVisitable
-
Performs some processing on a value.
- accept(PropositionVisitor) - Method in interface org.protempa.proposition.visitor.PropositionVisitable
-
Performs some processing on a proposition.
- accept(PropositionDefinitionVisitor) - Method in interface org.protempa.PropositionDefinitionVisitable
-
Performs some processing on a proposition definition.
- accept(PropositionDefinitionVisitor) - Method in class org.protempa.SequentialTemporalPatternDefinition
-
- accept(PropositionDefinitionVisitor) - Method in class org.protempa.SliceDefinition
-
- acceptChecked(PropositionDefinitionCheckedVisitor) - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
- acceptChecked(PropositionDefinitionCheckedVisitor) - Method in class org.protempa.ConstantDefinition
-
- acceptChecked(PropositionDefinitionCheckedVisitor) - Method in class org.protempa.ContextDefinition
-
- acceptChecked(PropositionDefinitionCheckedVisitor) - Method in class org.protempa.EventDefinition
-
- acceptChecked(PropositionDefinitionCheckedVisitor) - Method in class org.protempa.HighLevelAbstractionDefinition
-
- acceptChecked(PropositionDefinitionCheckedVisitor) - Method in class org.protempa.LowLevelAbstractionDefinition
-
- acceptChecked(PropositionDefinitionCheckedVisitor) - Method in class org.protempa.PrimitiveParameterDefinition
-
- acceptChecked(PropositionCheckedVisitor) - Method in class org.protempa.proposition.AbstractParameter
-
- acceptChecked(PropositionCheckedVisitor) - Method in class org.protempa.proposition.Constant
-
- acceptChecked(PropositionCheckedVisitor) - Method in class org.protempa.proposition.Context
-
- acceptChecked(PropositionCheckedVisitor) - Method in class org.protempa.proposition.Event
-
- acceptChecked(PropositionCheckedVisitor) - Method in class org.protempa.proposition.PrimitiveParameter
-
- acceptChecked(PropositionCheckedVisitor) - Method in interface org.protempa.proposition.visitor.PropositionCheckedVisitable
-
Performs some processing on a proposition that might throw a
checked exception.
- acceptChecked(PropositionDefinitionCheckedVisitor) - Method in interface org.protempa.PropositionDefinitionCheckedVisitable
-
Performs some processing on this proposition definition.
- acceptChecked(PropositionDefinitionCheckedVisitor) - Method in class org.protempa.SequentialTemporalPatternDefinition
-
- acceptChecked(PropositionDefinitionCheckedVisitor) - Method in class org.protempa.SliceDefinition
-
- add(Object) - Method in class org.protempa.graph.DirectedGraph
-
Adds a vertex.
- add(Weight) - Method in class org.protempa.graph.Weight
-
Creates a new weight with value equal to the sum of both weights.
- add(ExtendedPropositionDefinition) - Method in class org.protempa.HighLevelAbstractionDefinition
-
Adds an extended proposition definition.
- add(T) - Method in class org.protempa.proposition.Sequence
-
- add(int, T) - Method in class org.protempa.proposition.Sequence
-
- add(TemporalExtendedPropositionDefinition) - Method in class org.protempa.SliceDefinition
-
Adds a proposition id from which this slice definition is abstracted.
- addAlgorithm(Algorithm) - Method in class org.protempa.Algorithms
-
Adds a new algorithm.
- addAll(Collection<? extends T>) - Method in class org.protempa.proposition.Segment
-
Unsupported operation.
- addAll(Collection<? extends T>) - Method in class org.protempa.proposition.Sequence
-
- addAll(int, Collection<? extends T>) - Method in class org.protempa.proposition.Sequence
-
- addBackendListener(BackendListener<E>) - Method in class org.protempa.backend.AbstractBackend
-
- addBackendListener(BackendListener<E>) - Method in interface org.protempa.backend.Backend
-
Registers a listener that get called whenever a backend changes.
- addCustomCliOptions(Options) - Method in class org.protempa.cli.CLI
-
Override to specify any custom command line options.
- addDisplayNameOverride(String, String) - Method in class org.protempa.backend.BackendInstanceSpec
-
- addEventListener(ProtempaEventListener) - Method in class org.protempa.Protempa
-
- addPrimitiveParameterId(String) - Method in class org.protempa.LowLevelAbstractionDefinition
-
Adds a primitive parameter from which this abstraction is inferred.
- addPropertyChangeListener(PropertyChangeListener) - Method in class org.protempa.AbstractPropositionDefinition
-
- addPropertyChangeListener(String, PropertyChangeListener) - Method in class org.protempa.AbstractPropositionDefinition
-
- addPropertyChangeListener(PropertyChangeListener) - Method in class org.protempa.proposition.AbstractProposition
-
- addPropertyChangeListener(PropertyChangeListener) - Method in interface org.protempa.proposition.Proposition
-
- addPropertyChangeListener(PropertyChangeListener) - Method in interface org.protempa.PropositionDefinition
-
- addPropertyChangeListener(String, PropertyChangeListener) - Method in interface org.protempa.PropositionDefinition
-
- addPropertyChangeListener(PropertyChangeListener) - Method in class org.protempa.query.And
-
- addPropertyChangeListener(String, PropertyChangeListener) - Method in class org.protempa.query.And
-
- addPropertyChangeListener(PropertyChangeListener) - Method in class org.protempa.query.DefaultQueryBuilder
-
Adds listeners for changes to this Query's properties.
- addPropertyChangeListener(String, PropertyChangeListener) - Method in class org.protempa.query.DefaultQueryBuilder
-
Adds listeners for changes to the specified property.
- addReference(String, UniqueId) - Method in class org.protempa.proposition.AbstractProposition
-
- addRequiredOverride(String) - Method in class org.protempa.backend.BackendInstanceSpec
-
- addSourceListener(SourceListener<S>) - Method in class org.protempa.AbstractSource
-
Adds a listener that gets called whenever something changes.
- addSourceListener(SourceListener<S>) - Method in interface org.protempa.Source
-
- addToPosition(long, int) - Method in class org.protempa.proposition.value.AbsoluteTimeUnit
-
- addToPosition(long, int) - Method in class org.protempa.proposition.value.AbstractRelativeTimeUnit
-
- addToPosition(long, int) - Method in interface org.protempa.proposition.value.Unit
-
Adds a length in these units to the given position.
- addValueClassification(ValueClassification) - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
Adds a value classification for the abstraction.
- addValueDefinition(LowLevelAbstractionValueDefinition) - Method in class org.protempa.LowLevelAbstractionDefinition
-
- AFTER - Static variable in class org.protempa.proposition.interval.Relation
-
- AGE - Static variable in class org.protempa.dest.deid.DeidAttributes
-
- Algorithm - Interface in org.protempa
-
Interface to algorithms for processing primitive parameters.
- AlgorithmArguments - Class in org.protempa
-
Stores arguments to be passed into an algorithm for a given low-level
abstraction value definition.
- AlgorithmInitializationException - Exception in org.protempa
-
Thrown when an error occurs in algorithm initialization.
- AlgorithmInitializationException() - Constructor for exception org.protempa.AlgorithmInitializationException
-
- AlgorithmInitializationException(String, Throwable) - Constructor for exception org.protempa.AlgorithmInitializationException
-
- AlgorithmInitializationException(String) - Constructor for exception org.protempa.AlgorithmInitializationException
-
- AlgorithmInitializationException(Throwable) - Constructor for exception org.protempa.AlgorithmInitializationException
-
- AlgorithmParameter - Class in org.protempa
-
Definition of an algorithm parameter.
- AlgorithmParameter(String, ValueComparator[], ValueType) - Constructor for class org.protempa.AlgorithmParameter
-
Defines a parameter.
- AlgorithmProcessingException - Exception in org.protempa
-
Throws when an error occurs in algorithm processing.
- AlgorithmProcessingException() - Constructor for exception org.protempa.AlgorithmProcessingException
-
- AlgorithmProcessingException(String, Throwable) - Constructor for exception org.protempa.AlgorithmProcessingException
-
- AlgorithmProcessingException(String) - Constructor for exception org.protempa.AlgorithmProcessingException
-
- AlgorithmProcessingException(Throwable) - Constructor for exception org.protempa.AlgorithmProcessingException
-
- Algorithms - Class in org.protempa
-
The set of defined algorithms.
- AlgorithmSource - Interface in org.protempa
-
- AlgorithmSourceBackend - Interface in org.protempa.backend.asb
-
A set of algorithms for use in PROTEMPA pattern detection.
- AlgorithmSourceBackendInitializationException - Exception in org.protempa.backend
-
- AlgorithmSourceBackendInitializationException(String) - Constructor for exception org.protempa.backend.AlgorithmSourceBackendInitializationException
-
- AlgorithmSourceBackendInitializationException(Throwable) - Constructor for exception org.protempa.backend.AlgorithmSourceBackendInitializationException
-
- AlgorithmSourceBackendInitializationException(String, Throwable) - Constructor for exception org.protempa.backend.AlgorithmSourceBackendInitializationException
-
- AlgorithmSourceBackendUpdatedEvent - Class in org.protempa.backend
-
The event generated when the algorithm source backend is updated.
- AlgorithmSourceBackendUpdatedEvent(AlgorithmSourceBackend) - Constructor for class org.protempa.backend.AlgorithmSourceBackendUpdatedEvent
-
Constructs an event with the source
AlgorithmSourceBackend that generated the event.
- AlgorithmSourceException - Exception in org.protempa
-
Thrown when an error occurs in algorithm initialization or processing.
- AlgorithmSourceImpl - Class in org.protempa
-
A read-only "interface" to an externally maintained set of pattern detection
algorithm implementations.
- AlgorithmSourceImpl(AlgorithmSourceBackend[]) - Constructor for class org.protempa.AlgorithmSourceImpl
-
- AlgorithmSourceReadException - Exception in org.protempa
-
Thrown when an error occurs reading an algorithm.
- AlgorithmSourceReadException() - Constructor for exception org.protempa.AlgorithmSourceReadException
-
- AlgorithmSourceReadException(String, Throwable) - Constructor for exception org.protempa.AlgorithmSourceReadException
-
- AlgorithmSourceReadException(String) - Constructor for exception org.protempa.AlgorithmSourceReadException
-
- AlgorithmSourceReadException(Throwable) - Constructor for exception org.protempa.AlgorithmSourceReadException
-
- AlgorithmSourceUpdatedEvent - Class in org.protempa
-
The event generated when the algorithm source is updated.
- AlgorithmSourceUpdatedEvent(AlgorithmSource) - Constructor for class org.protempa.AlgorithmSourceUpdatedEvent
-
Constructs an event with the source
AlgorithmSource that generated the event.
- AllPropositionIntervalComparator - Class in org.protempa.proposition.comparator
-
For sorting propositions by interval, if they are temporal propositions.
- AllPropositionIntervalComparator() - Constructor for class org.protempa.proposition.comparator.AllPropositionIntervalComparator
-
- And<E> - Class in org.protempa.query
-
A list of PROTEMPA ids that are chained together by boolean
and.
- And() - Constructor for class org.protempa.query.And
-
- And(E...) - Constructor for class org.protempa.query.And
-
- andIterator() - Method in class org.protempa.backend.dsb.filter.AbstractFilter
-
- andIterator() - Method in interface org.protempa.backend.dsb.filter.Filter
-
Returns an iterator over this filter and all subsequent filters in
the chain.
- Argument(String, boolean) - Constructor for class org.protempa.cli.CLI.Argument
-
Instantiates an instance with the name of the argument and
whether or not it is required.
- asBuilder() - Method in class org.protempa.Attribute
-
- asBuilder() - Method in class org.protempa.DefaultSourceId
-
- asBuilder() - Method in class org.protempa.NotRecordedSourceId
-
- asBuilder() - Method in class org.protempa.proposition.value.BooleanValue
-
- asBuilder() - Method in class org.protempa.proposition.value.DateValue
-
- asBuilder() - Method in class org.protempa.proposition.value.InequalityNumberValue
-
- asBuilder() - Method in class org.protempa.proposition.value.NominalValue
-
- asBuilder() - Method in class org.protempa.proposition.value.NumberValue
-
- asBuilder() - Method in interface org.protempa.proposition.value.NumericalValue
-
- asBuilder() - Method in interface org.protempa.proposition.value.OrderedValue
-
- asBuilder() - Method in class org.protempa.proposition.value.OrdinalValue
-
- asBuilder() - Method in interface org.protempa.proposition.value.Value
-
- asBuilder() - Method in class org.protempa.proposition.value.ValueList
-
- asBuilder() - Method in interface org.protempa.SourceId
-
- asBuilder() - Method in class org.protempa.valueset.ValueSet
-
- asBuilder() - Method in class org.protempa.valueset.ValueSetElement
-
- asDate(Long) - Static method in class org.protempa.proposition.value.AbsoluteTimeGranularityUtil
-
- asPosition(Date) - Static method in class org.protempa.proposition.value.AbsoluteTimeGranularityUtil
-
- AtLeastNColumnSpec - Class in org.protempa.dest.table
-
- AtLeastNColumnSpec(int, Link[]) - Constructor for class org.protempa.dest.table.AtLeastNColumnSpec
-
- AtLeastNColumnSpec(String, int, Link[]) - Constructor for class org.protempa.dest.table.AtLeastNColumnSpec
-
- AtLeastNColumnSpec(String, int, Link[], String, String) - Constructor for class org.protempa.dest.table.AtLeastNColumnSpec
-
- attribute(String) - Method in class org.protempa.AbstractPropositionDefinition
-
- Attribute - Class in org.protempa
-
- Attribute(String, Value) - Constructor for class org.protempa.Attribute
-
- attribute(String) - Method in interface org.protempa.PropositionDefinition
-
- AttributeBuilder - Class in org.protempa
-
- AttributeBuilder() - Constructor for class org.protempa.AttributeBuilder
-
- calcShortestDistances(Object, DirectedGraph, BellmanFord.Mode) - Static method in class org.protempa.graph.BellmanFord
-
Calculates the distance of every object in a graph from a source object.
- cancel() - Method in class org.protempa.dest.AbstractQueryResultsHandler
-
- cancel() - Method in class org.protempa.dest.deid.DeidentifiedQueryResultsHandler
-
- cancel() - Method in interface org.protempa.dest.QueryResultsHandler
-
Requests cancellation of whatever this object is currently doing.
- cancel() - Method in class org.protempa.Protempa
-
Cancels an executing query.
- chainLength() - Method in class org.protempa.backend.dsb.filter.AbstractFilter
-
- changes - Variable in class org.protempa.AbstractPropositionDefinition
-
- changes - Variable in class org.protempa.MinMaxGapFunction
-
- changes - Variable in class org.protempa.SimpleGapFunction
-
- checkArray(Object[], String) - Static method in class org.protempa.ProtempaUtil
-
Checks if the specified array is null, has length zero or has null
values.
- checkArrayForNullElement(Object[], String) - Static method in class org.protempa.ProtempaUtil
-
Checks if the specified array has any null elements.
- children - Variable in class org.protempa.AbstractPropositionDefinition
-
- CHILDREN_PROPERTY - Static variable in class org.protempa.AbstractPropositionDefinition
-
- CipherDeidConfig - Interface in org.protempa.dest.deid
-
- CipherEncryption - Class in org.protempa.dest.deid
-
Utility class for encrypting and decrypting strings.
- CipherEncryption(CipherDeidConfig) - Constructor for class org.protempa.dest.deid.CipherEncryption
-
- clear() - Method in class org.protempa.AlgorithmSourceImpl
-
- clear() - Method in class org.protempa.DataSourceImpl
-
- clear() - Method in class org.protempa.DataSourceResultMap
-
- clear() - Method in class org.protempa.graph.DirectedGraph
-
Remove all vertices and edges.
- clear() - Method in class org.protempa.KnowledgeSourceImpl
-
- clear() - Method in class org.protempa.proposition.Sequence
-
- clear() - Method in class org.protempa.Protempa
-
Clears resources created by this object and the data source, knowledge
source and algorithm source.
- clear() - Method in interface org.protempa.Source
-
- clear() - Method in class org.protempa.TermSourceImpl
-
- CLI - Class in org.protempa.cli
-
Convenience class for creating command line applications using PROTEMPA.
- CLI() - Constructor for class org.protempa.cli.CLI
-
Instantiates this application.
- CLI(String) - Constructor for class org.protempa.cli.CLI
-
Instantiates the application with a required shell command name.
- CLI(CLI.Argument[]) - Constructor for class org.protempa.cli.CLI
-
Instantiates the application with optional arguments.
- CLI(String, CLI.Argument[]) - Constructor for class org.protempa.cli.CLI
-
Instantiates the application with a required shell command name and
optional arguments that are not prefixed with option syntax.
- CLI(CLI.Argument[], boolean) - Constructor for class org.protempa.cli.CLI
-
Instantiates the application with a required shell command name and
whether to create the configuration id option.
- CLI(String, CLI.Argument[], boolean) - Constructor for class org.protempa.cli.CLI
-
Instantiates the application with a required shell command name,
optional arguments that are not prefixed with option syntax, and
whether to create the configuration id option.
- CLI.Argument - Class in org.protempa.cli
-
For defining command line arguments that are not prefixed by the option
syntax.
- CLIException - Exception in org.protempa.cli
-
- CLIException(Throwable) - Constructor for exception org.protempa.cli.CLIException
-
- CLIException(String) - Constructor for exception org.protempa.cli.CLIException
-
- CLIException(String, Throwable) - Constructor for exception org.protempa.cli.CLIException
-
- CLIException() - Constructor for exception org.protempa.cli.CLIException
-
- clone() - Method in class org.protempa.proposition.DefaultLocalUniqueId
-
- clone() - Method in interface org.protempa.proposition.LocalUniqueId
-
Makes a shallow copy of this instance.
- clone() - Method in class org.protempa.proposition.ProviderBasedLocalUniqueId
-
- clone() - Method in class org.protempa.query.And
-
- close() - Method in class org.protempa.AbstractAlgorithm
-
- close() - Method in class org.protempa.AbstractSource
-
Removes this
Source as a listener to the
Backends
provided to the constructor.
- close() - Method in interface org.protempa.Algorithm
-
- close() - Method in class org.protempa.AlgorithmSourceImpl
-
- close() - Method in class org.protempa.backend.asb.AbstractAlgorithmSourceBackend
-
Implemented as a no-op.
- close() - Method in class org.protempa.backend.asb.java.AbstractJavaAlgorithmBackend
-
- close() - Method in interface org.protempa.backend.Backend
-
Releases any resources allocated by this backend.
- close() - Method in class org.protempa.backend.dsb.AbstractDataSourceBackend
-
- close() - Method in class org.protempa.backend.ksb.AbstractKnowledgeSourceBackend
-
Implemented as a no-op.
- close() - Method in class org.protempa.backend.tsb.AbstractTermSourceBackend
-
Implemented as a no-op
- close() - Method in class org.protempa.cli.CLI
-
Closes the instance of
Protempa created by
#initialize(java.lang.String).
- close() - Method in class org.protempa.DataSourceBackendMultiplexingDataStreamingEventIterator
-
Closes resources associated with the iterators specified in the
constructor.
- close() - Method in class org.protempa.DataSourceImpl
-
- close() - Method in interface org.protempa.DataStreamingEventIterator
-
Closes any IO or other resources opened by the iterator.
- close() - Method in class org.protempa.dest.AbstractQueryResultsHandler
-
- close() - Method in class org.protempa.dest.deid.DeidentifiedQueryResultsHandler
-
- close() - Method in interface org.protempa.dest.QueryResultsHandler
-
Called by Protempa after #handleFinish() to clean up any
resources used by the handler.
- close() - Method in class org.protempa.dest.table.FileTabularWriter
-
- close() - Method in class org.protempa.dest.table.RecordHandler
-
- close() - Method in class org.protempa.dest.table.RelDbTabularWriter
-
- close() - Method in interface org.protempa.dest.table.TabularWriter
-
- close() - Method in class org.protempa.KnowledgeSourceImpl
-
- close() - Method in class org.protempa.MultiplexingDataStreamingEventIterator
-
- close() - Method in class org.protempa.Protempa
-
Closes resources created by this object and the data source, knowledge
source, and algorithm source.
- close() - Method in interface org.protempa.Source
-
- close() - Method in class org.protempa.TermSourceImpl
-
- closedUnexpectedly(SourceClosedUnexpectedlyEvent) - Method in interface org.protempa.SourceListener
-
The method that gets called when the source is closed unexpectedly, like
when a connection to a server is lost.
- CloseException - Exception in org.protempa
-
- CloseException() - Constructor for exception org.protempa.CloseException
-
- CloseException(String, Throwable) - Constructor for exception org.protempa.CloseException
-
- CloseException(String) - Constructor for exception org.protempa.CloseException
-
- CloseException(Throwable) - Constructor for exception org.protempa.CloseException
-
- CollectionSizeExpression - Class in org.protempa
-
Sets a lower limit on the size of a collection.
- CollectionSizeExpression(int) - Constructor for class org.protempa.CollectionSizeExpression
-
- collectPropDefDescendantsUsingAllNarrower(boolean, String[]) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
- collectPropDefDescendantsUsingAllNarrower(boolean, String[]) - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- collectPropDefDescendantsUsingAllNarrower(boolean, String...) - Method in interface org.protempa.KnowledgeSource
-
- collectPropDefDescendantsUsingAllNarrower(boolean, String...) - Method in class org.protempa.KnowledgeSourceImpl
-
- collectPropDefDescendantsUsingInverseIsA(String[]) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
- collectPropDefDescendantsUsingInverseIsA(String[]) - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- collectPropDefDescendantsUsingInverseIsA(String...) - Method in interface org.protempa.KnowledgeSource
-
- collectPropDefDescendantsUsingInverseIsA(String...) - Method in class org.protempa.KnowledgeSourceImpl
-
- collectPropIdDescendantsUsingAllNarrower(boolean, String[]) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
- collectPropIdDescendantsUsingAllNarrower(boolean, String[]) - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- collectPropIdDescendantsUsingAllNarrower(boolean, String...) - Method in interface org.protempa.KnowledgeSource
-
- collectPropIdDescendantsUsingAllNarrower(boolean, String...) - Method in class org.protempa.KnowledgeSourceImpl
-
- collectPropIdDescendantsUsingInverseIsA(String[]) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
- collectPropIdDescendantsUsingInverseIsA(String[]) - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- collectPropIdDescendantsUsingInverseIsA(String...) - Method in interface org.protempa.KnowledgeSource
-
- collectPropIdDescendantsUsingInverseIsA(String...) - Method in class org.protempa.KnowledgeSourceImpl
-
- collectStatistics() - Method in class org.protempa.dest.map.MapQueryResultsHandler
-
- columnNames(KnowledgeSource) - Method in class org.protempa.dest.table.AtLeastNColumnSpec
-
- columnNames(KnowledgeSource) - Method in class org.protempa.dest.table.ConstantColumnSpec
-
- columnNames(KnowledgeSource) - Method in class org.protempa.dest.table.CountColumnSpec
-
- columnNames(KnowledgeSource) - Method in class org.protempa.dest.table.DistanceBetweenColumnSpec
-
- columnNames(KnowledgeSource) - Method in class org.protempa.dest.table.PropositionColumnSpec
-
- columnNames(KnowledgeSource) - Method in class org.protempa.dest.table.PropositionValueColumnSpec
-
- columnNames(KnowledgeSource) - Method in interface org.protempa.dest.table.TableColumnSpec
-
Gets the names of the columns representing one instance of a
proposition or property.
- columnValues(String, Proposition, Map<Proposition, List<Proposition>>, Map<Proposition, List<Proposition>>, Map<UniqueId, Proposition>, KnowledgeSourceCache, TabularWriter) - Method in class org.protempa.dest.table.AtLeastNColumnSpec
-
- columnValues(String, Proposition, Map<Proposition, List<Proposition>>, Map<Proposition, List<Proposition>>, Map<UniqueId, Proposition>, KnowledgeSourceCache, TabularWriter) - Method in class org.protempa.dest.table.ConstantColumnSpec
-
- columnValues(String, Proposition, Map<Proposition, List<Proposition>>, Map<Proposition, List<Proposition>>, Map<UniqueId, Proposition>, KnowledgeSourceCache, TabularWriter) - Method in class org.protempa.dest.table.CountColumnSpec
-
- columnValues(String, Proposition, Map<Proposition, List<Proposition>>, Map<Proposition, List<Proposition>>, Map<UniqueId, Proposition>, KnowledgeSourceCache, TabularWriter) - Method in class org.protempa.dest.table.DistanceBetweenColumnSpec
-
- columnValues(String, Proposition, Map<Proposition, List<Proposition>>, Map<Proposition, List<Proposition>>, Map<UniqueId, Proposition>, KnowledgeSourceCache, TabularWriter) - Method in class org.protempa.dest.table.PropositionColumnSpec
-
- columnValues(String, Proposition, Map<Proposition, List<Proposition>>, Map<Proposition, List<Proposition>>, Map<UniqueId, Proposition>, KnowledgeSourceCache, TabularWriter) - Method in class org.protempa.dest.table.PropositionValueColumnSpec
-
- columnValues(String, Proposition, Map<Proposition, List<Proposition>>, Map<Proposition, List<Proposition>>, Map<UniqueId, Proposition>, KnowledgeSourceCache, TabularWriter) - Method in interface org.protempa.dest.table.TableColumnSpec
-
Gets the values of the specified propositions or properties for
one row of data.
- CommonsBackend - Class in org.protempa.backend
-
- CommonsBackend() - Constructor for class org.protempa.backend.CommonsBackend
-
- compare(Proposition, Proposition) - Method in class org.protempa.proposition.comparator.AllPropositionIntervalComparator
-
If comparing
TemporalPropositions, compares their intervals;
otherwise, a constant proposition compared to a temporal proposition
will return
-1, and a constant proposition compared to
another constant proposition will return
0.
- compare(TemporalProposition, TemporalProposition) - Method in class org.protempa.proposition.comparator.MaxFinishTemporalPropositionComparator
-
- compare(TemporalProposition, TemporalProposition) - Method in class org.protempa.proposition.comparator.TemporalPropositionIntervalComparator
-
- compare(Value) - Method in class org.protempa.proposition.value.BooleanValue
-
Returns
ValueComparator.UNKNOWN, as boolean values do not
have a natural order, unless the provided value is a value list, for
which this method tests for membership in the list.
- compare(Value) - Method in class org.protempa.proposition.value.DateValue
-
Compares this date value and another date value according to their
natural order, or checks this date value for membership in a value list.
- compare(Value) - Method in class org.protempa.proposition.value.InequalityNumberValue
-
Compares this value and another numerically, or checks this value
for membership in a value list.
- compare(Value) - Method in class org.protempa.proposition.value.NominalValue
-
Compares this nominal value and another lexically.
- compare(Value) - Method in class org.protempa.proposition.value.NumberValue
-
Compares this value and another numerically, or checks this number value
for membership in a value list.
- compare(Value) - Method in class org.protempa.proposition.value.OrdinalValue
-
Compares this value and another according to the defined order, or
checks this number value for membership in a value list.
- compare(Value) - Method in interface org.protempa.proposition.value.Value
-
Returns whether the given value is greater, less than, equal to or not
equal to this value.
- compare(Value, Value) - Method in enum org.protempa.proposition.value.ValueComparator
-
Returns whether two values have the relationship specified by this
value comparator.
- compare(Value) - Method in class org.protempa.proposition.value.ValueList
-
Compares a value list for membership in another value list.
- compare(PropositionDefinition, PropositionDefinition) - Method in class org.protempa.ProtempaUtil.PropositionDefinitionDisplayNameComparator
-
- compareTo(Weight) - Method in class org.protempa.graph.Weight
-
Compares two Weight objects numerically.
- compareTo(Interval) - Method in class org.protempa.proposition.interval.Interval
-
- compareTo(Granularity) - Method in class org.protempa.proposition.value.AbsoluteTimeGranularity
-
- compareTo(Unit) - Method in class org.protempa.proposition.value.AbsoluteTimeUnit
-
- compareTo(DateValue) - Method in class org.protempa.proposition.value.DateValue
-
- compareTo(NominalValue) - Method in class org.protempa.proposition.value.NominalValue
-
- compareTo(NumberValue) - Method in class org.protempa.proposition.value.NumberValue
-
- compareTo(Granularity) - Method in class org.protempa.proposition.value.RelativeDayGranularity
-
- compareTo(Unit) - Method in class org.protempa.proposition.value.RelativeDayUnit
-
- compareTo(Granularity) - Method in class org.protempa.proposition.value.RelativeHourGranularity
-
- compareTo(Unit) - Method in class org.protempa.proposition.value.RelativeHourUnit
-
- compareToLong(long) - Method in class org.protempa.graph.Weight
-
- CompoundInterval<E extends TemporalProposition> - Class in org.protempa.proposition
-
- CompoundLowLevelAbstractionDefinition - Class in org.protempa
-
An abstraction for representing compound low-level abstractions.
- CompoundLowLevelAbstractionDefinition(String) - Constructor for class org.protempa.CompoundLowLevelAbstractionDefinition
-
Constructor for this class.
- CompoundLowLevelAbstractionDefinition.ValueDefinitionMatchOperator - Enum in org.protempa
-
The different ways to consider the low-level abstraction value rules in a
given interval
- CompoundValuedInterval - Class in org.protempa.proposition
-
Represents an interval of multiple propositions and their values.
- compute(Segment<PrimitiveParameter>, AlgorithmArguments) - Method in class org.protempa.AbstractAlgorithm
-
- compute(Segment<PrimitiveParameter>, AlgorithmArguments) - Method in interface org.protempa.Algorithm
-
Computes whether or not a temporal abstraction exists in a segment of a
time series.
- compute(Segment<PrimitiveParameter>, AlgorithmArguments) - Method in class org.protempa.backend.asb.java.MinAlgorithm
-
- compute(Segment<PrimitiveParameter>, AlgorithmArguments) - Method in class org.protempa.backend.asb.java.StateAlgorithm
-
Computes whether the values of a time sequence segment are above and/or
below a specified value.
- compute(Segment<PrimitiveParameter>, AlgorithmArguments) - Method in class org.protempa.backend.asb.java.TrendAlgorithm
-
Computes whether the slope of a linear regression line drawn through the
values of a time sequence segment is above and/or below a specified
value.
- computeLength() - Method in class org.protempa.proposition.interval.Interval
-
- Configuration - Class in org.protempa.backend
-
- Configuration() - Constructor for class org.protempa.backend.Configuration
-
- ConfigurationRemoveException - Exception in org.protempa.backend
-
- ConfigurationRemoveException(Throwable) - Constructor for exception org.protempa.backend.ConfigurationRemoveException
-
- ConfigurationRemoveException(String, Throwable) - Constructor for exception org.protempa.backend.ConfigurationRemoveException
-
- ConfigurationRemoveException(String) - Constructor for exception org.protempa.backend.ConfigurationRemoveException
-
- ConfigurationRemoveException() - Constructor for exception org.protempa.backend.ConfigurationRemoveException
-
- Configurations - Interface in org.protempa.backend
-
- ConfigurationsLoadException - Exception in org.protempa.backend
-
- ConfigurationsLoadException(Throwable) - Constructor for exception org.protempa.backend.ConfigurationsLoadException
-
- ConfigurationsLoadException(String, Throwable) - Constructor for exception org.protempa.backend.ConfigurationsLoadException
-
- ConfigurationsLoadException(String) - Constructor for exception org.protempa.backend.ConfigurationsLoadException
-
- ConfigurationsLoadException() - Constructor for exception org.protempa.backend.ConfigurationsLoadException
-
- ConfigurationsNotFoundException - Exception in org.protempa.backend
-
- ConfigurationsNotFoundException(Throwable) - Constructor for exception org.protempa.backend.ConfigurationsNotFoundException
-
- ConfigurationsNotFoundException(String, Throwable) - Constructor for exception org.protempa.backend.ConfigurationsNotFoundException
-
- ConfigurationsNotFoundException(String) - Constructor for exception org.protempa.backend.ConfigurationsNotFoundException
-
- ConfigurationsNotFoundException() - Constructor for exception org.protempa.backend.ConfigurationsNotFoundException
-
- ConfigurationsProvider - Interface in org.protempa.backend
-
- ConfigurationsProviderManager - Class in org.protempa.backend
-
Class for getting PROTEMPA configurations.
- ConfigurationsProviderManager() - Constructor for class org.protempa.backend.ConfigurationsProviderManager
-
- ConfigurationsSaveException - Exception in org.protempa.backend
-
- ConfigurationsSaveException(Throwable) - Constructor for exception org.protempa.backend.ConfigurationsSaveException
-
- ConfigurationsSaveException(String, Throwable) - Constructor for exception org.protempa.backend.ConfigurationsSaveException
-
- ConfigurationsSaveException(String) - Constructor for exception org.protempa.backend.ConfigurationsSaveException
-
- ConfigurationsSaveException() - Constructor for exception org.protempa.backend.ConfigurationsSaveException
-
- ConfigurationsSupport - Class in org.protempa.backend
-
- ConfigurationsSupport(BackendProvider) - Constructor for class org.protempa.backend.ConfigurationsSupport
-
- Constant - Class in org.protempa.proposition
-
A parameter with no temporal component.
- Constant(String, UniqueId) - Constructor for class org.protempa.proposition.Constant
-
Creates a constant with an identifier String.
- ConstantColumnSpec - Class in org.protempa.dest.table
-
- ConstantColumnSpec(String, String) - Constructor for class org.protempa.dest.table.ConstantColumnSpec
-
- ConstantDefinition - Class in org.protempa
-
- ConstantDefinition(String) - Constructor for class org.protempa.ConstantDefinition
-
- contains(Object) - Method in class org.protempa.graph.DirectedGraph
-
Check to see if an object is a vertex.
- CONTAINS - Static variable in class org.protempa.proposition.interval.Relation
-
- contains(Object) - Method in class org.protempa.proposition.Segment
-
- contains(Object) - Method in class org.protempa.proposition.Sequence
-
- CONTAINS_OR_EQUALS - Static variable in class org.protempa.proposition.interval.Relation
-
- containsAll(Collection<?>) - Method in class org.protempa.proposition.Sequence
-
- containsEdge(Object, Object) - Method in class org.protempa.graph.DirectedGraph
-
Check to see if an edge has been set between two vertices.
- containsKey(Object) - Method in class org.protempa.DataSourceResultMap
-
- containsTerm(String) - Method in class org.protempa.TermSubsumption
-
- containsValue(Object) - Method in class org.protempa.DataSourceResultMap
-
- Context - Class in org.protempa.proposition
-
A state of affairs that, when interpreted over a time interval, can change
the interpretation (abstraction) of one or more parameters within the scope
of that time interval.
- Context(String, UniqueId) - Constructor for class org.protempa.proposition.Context
-
- ContextDefinition - Class in org.protempa
-
A context is a state of affairs that, when interpreted over a time interval,
can change the interpretation of data or abstractions.
- ContextDefinition(String) - Constructor for class org.protempa.ContextDefinition
-
- ContextIntervalSectioner - Class in org.protempa.proposition
-
- ContextIntervalSectioner() - Constructor for class org.protempa.proposition.ContextIntervalSectioner
-
- ContextOffset - Class in org.protempa
-
- ContextOffset() - Constructor for class org.protempa.ContextOffset
-
- CountColumnSpec - Class in org.protempa.dest.table
-
Counts the number of instances of a proposition.
- CountColumnSpec(Link[]) - Constructor for class org.protempa.dest.table.CountColumnSpec
-
- CountColumnSpec(String, Link[], boolean) - Constructor for class org.protempa.dest.table.CountColumnSpec
-
Constructs a count column spec with an optional header name, the links
to traverse and whether to count the number of unique proposition ids
rather than the number of propositions.
- createContext() - Method in class org.protempa.CollectionSizeExpression
-
- createDataSourceConstraint() - Method in class org.protempa.AbstractAlgorithm
-
- createDataSourceConstraint() - Method in interface org.protempa.Algorithm
-
- createPropositionMap(List<T>) - Static method in class org.protempa.proposition.PropositionUtil
-
Divides a list of propositions up by id.
- createResults(List<Proposition>) - Method in class org.protempa.dest.table.Link
-
Filters out propositions by applying the property constraint and index
constraints.
- CreateRuleBaseException - Exception in org.protempa
-
- Criteria - Interface in org.protempa.dest.keyloader
-
- CriteriaEvaluateException - Exception in org.protempa.dest.keyloader
-
- CriteriaEvaluateException() - Constructor for exception org.protempa.dest.keyloader.CriteriaEvaluateException
-
- CriteriaEvaluateException(String, Throwable) - Constructor for exception org.protempa.dest.keyloader.CriteriaEvaluateException
-
- CriteriaEvaluateException(String) - Constructor for exception org.protempa.dest.keyloader.CriteriaEvaluateException
-
- CriteriaEvaluateException(Throwable) - Constructor for exception org.protempa.dest.keyloader.CriteriaEvaluateException
-
- CriteriaInitException - Exception in org.protempa.dest.keyloader
-
- CriteriaInitException() - Constructor for exception org.protempa.dest.keyloader.CriteriaInitException
-
- CriteriaInitException(String, Throwable) - Constructor for exception org.protempa.dest.keyloader.CriteriaInitException
-
- CriteriaInitException(String) - Constructor for exception org.protempa.dest.keyloader.CriteriaInitException
-
- CriteriaInitException(Throwable) - Constructor for exception org.protempa.dest.keyloader.CriteriaInitException
-
- CycleDetectedException - Exception in org.protempa
-
- CycleDetectedException(Collection<String>) - Constructor for exception org.protempa.CycleDetectedException
-
- GapFunction - Class in org.protempa
-
A convenience class for implementing gap functions.
- GapFunction() - Constructor for class org.protempa.GapFunction
-
- get(Object) - Method in class org.protempa.DataSourceResultMap
-
- get(String) - Method in class org.protempa.KnowledgeSourceCache
-
- get(int) - Method in class org.protempa.proposition.Segment
-
- get(int) - Method in class org.protempa.proposition.Sequence
-
- get(String) - Method in class org.protempa.proposition.stats.AbstractKaplanMeyer
-
- get(String, Value) - Method in class org.protempa.proposition.stats.AbstractKaplanMeyer
-
- get(String) - Method in class org.protempa.QueryResults
-
- getAbbrevatedName() - Method in class org.protempa.proposition.value.AbsoluteTimeGranularity
-
- getAbbrevatedName() - Method in interface org.protempa.proposition.value.Granularity
-
Returns a shorter version of the granularity's name.
- getAbbrevatedName() - Method in class org.protempa.proposition.value.RelativeDayGranularity
-
- getAbbrevatedName() - Method in class org.protempa.proposition.value.RelativeHourGranularity
-
- getAbbrevDisplayName() - Method in class org.protempa.Term
-
- getAbbrevDisplayName() - Method in class org.protempa.valueset.ValueSetElement
-
Returns the value's abbreviated display name.
- getAbbrevDisplayName() - Method in class org.protempa.valueset.ValueSetElementBuilder
-
- getAbbrevDisplayNameHeading() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getAbbrevDisplayNameHeading() - Method in class org.protempa.dest.table.OutputConfig
-
- getAbbreviatedDisplayName() - Method in class org.protempa.AbstractPropositionDefinition
-
- getAbbreviatedDisplayName() - Method in class org.protempa.ExtendedPropositionDefinition
-
- getAbbreviatedDisplayName() - Method in interface org.protempa.PropositionDefinition
-
This proposition definition's abbreviated display name.
- getAbbreviatedName() - Method in class org.protempa.proposition.value.AbstractTimeUnit
-
- getAbbreviatedName() - Method in interface org.protempa.proposition.value.Unit
-
Returns a short version of the unit's singular name.
- getAbstractedFrom() - Method in interface org.protempa.AbstractionDefinition
-
Returns all proposition ids from which this abstract parameter is
abstracted.
- getAbstractedFrom() - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
- getAbstractedFrom() - Method in class org.protempa.HighLevelAbstractionDefinition
-
- getAbstractedFrom() - Method in class org.protempa.LowLevelAbstractionDefinition
-
- getAbstractedFrom() - Method in class org.protempa.SequentialTemporalPatternDefinition
-
- getAbstractedFrom() - Method in class org.protempa.SliceDefinition
-
- getAccessed() - Method in class org.protempa.AbstractPropositionDefinition
-
- getAccessed() - Method in interface org.protempa.PropositionDefinition
-
Returns the timestamp of when this proposition definition was accessed from the knowledge source.
- getAdvanceRowSkipEnd() - Method in class org.protempa.AbstractAlgorithm
-
- getAdvanceRowSkipEnd() - Method in interface org.protempa.Algorithm
-
- getAlgorithm(String) - Method in class org.protempa.Algorithms
-
Returns the algorithm with a given id.
- getAlgorithm() - Method in interface org.protempa.dest.deid.MessageDigestDeidConfig
-
- getAlgorithmClass(String) - Method in class org.protempa.backend.asb.java.AbstractJavaAlgorithmBackend
-
name is expected to be a fully-qualified class name in dot-format (e.g.,
my.algorithms.MockAlgorithm).
- getAlgorithmId() - Method in class org.protempa.LowLevelAbstractionDefinition
-
- getAlgorithms() - Method in class org.protempa.Algorithms
-
Returns all algorithms.
- getAlgorithms() - Method in class org.protempa.backend.asb.java.JavaAlgorithmBackend
-
- getAlgorithmSource() - Method in class org.protempa.Protempa
-
Gets the algorithm source.
- getAlgorithmSourceBackendInstanceSpecs() - Method in class org.protempa.backend.ConfigurationsSupport
-
- getAlgorithmSourceBackendSections() - Method in class org.protempa.backend.Configuration
-
- getAlgorithmSourceBackendSpecLoader() - Method in interface org.protempa.backend.BackendProvider
-
- getAlgorithmSourceBackendSpecLoader() - Static method in class org.protempa.backend.BackendProviderManager
-
- getAlgorithmSourceBackendSpecLoader() - Method in class org.protempa.backend.test.MockBackendProvider
-
- getAlgorithmsPropertiesResourceName() - Method in class org.protempa.backend.asb.java.AbstractJavaAlgorithmBackend
-
- getAlgorithmsPropertiesResourceName() - Method in class org.protempa.backend.asb.java.JavaAlgorithmBackend
-
- getAllowedValues() - Method in class org.protempa.dest.table.Derivation
-
- getAllSections() - Method in class org.protempa.backend.Configuration
-
- getAnd() - Method in class org.protempa.backend.dsb.filter.AbstractFilter
-
- getAnd() - Method in interface org.protempa.backend.dsb.filter.Filter
-
Returns the next filter in the chain, if specified.
- getAnded() - Method in class org.protempa.query.And
-
- getArguments() - Method in class org.protempa.cli.CLI
-
Gets optional arguments that are not prefixed with option syntax.
- getAttribute(String) - Method in class org.protempa.PropertyDefinition
-
- getAttributeBuilders() - Method in class org.protempa.valueset.ValueSetElementBuilder
-
- getAttributes() - Method in class org.protempa.AbstractPropositionDefinition
-
- getAttributes() - Method in class org.protempa.PropertyDefinition
-
- getAttributes() - Method in interface org.protempa.PropositionDefinition
-
- getAttributes() - Method in class org.protempa.valueset.ValueSetElement
-
- getBackend() - Method in class org.protempa.backend.AlgorithmSourceBackendUpdatedEvent
-
- getBackend() - Method in class org.protempa.backend.BackendUpdatedEvent
-
Returns the source
Backend (the same as what
getSource() returns).
- getBackend() - Method in class org.protempa.backend.DataSourceBackendUpdatedEvent
-
- getBackend() - Method in class org.protempa.backend.KnowledgeSourceBackendUpdatedEvent
-
- getBackend() - Method in class org.protempa.backend.TermSourceBackendUpdatedEvent
-
- getBackendPropertySpec() - Method in class org.protempa.backend.test.MockBackendPropertySpec
-
- getBackendProvider() - Method in class org.protempa.backend.AbstractConfigurations
-
- getBackendProvider() - Static method in class org.protempa.backend.BackendProviderManager
-
- getBackendProvider() - Method in class org.protempa.backend.BackendSpec
-
- getBackendProviderClassLoader() - Static method in class org.protempa.backend.BackendProviderManager
-
- getBackends() - Method in class org.protempa.AbstractSource
-
Gets the backends registered to this source.
- getBackends() - Method in interface org.protempa.Source
-
- getBackendSpec() - Method in class org.protempa.backend.BackendInstanceSpec
-
- getBehavior() - Method in class org.protempa.dest.table.Derivation
-
- getBigDecimal() - Method in class org.protempa.proposition.value.InequalityNumberValue
-
- getBigDecimal() - Method in class org.protempa.proposition.value.NumberValue
-
- getBigDecimal() - Method in interface org.protempa.proposition.value.NumericalValue
-
- getBoolean() - Method in class org.protempa.proposition.value.BooleanValue
-
Returns the Java
Boolean corresponding to this object.
- getCalendarUnits() - Method in class org.protempa.proposition.value.AbstractTimeUnit
-
- getCalendarUnits() - Method in class org.protempa.proposition.value.RelativeDayGranularity
-
- getCalendarUnits() - Method in class org.protempa.proposition.value.RelativeHourGranularity
-
- getChildren() - Method in class org.protempa.AbstractPropositionDefinition
-
- getChildren() - Method in interface org.protempa.PropositionDefinition
-
Returns the ids of this proposition definition's children.
- getChildrenToParents() - Method in class org.protempa.dest.DefaultStatistics
-
- getChildrenToParents(String[]) - Method in class org.protempa.dest.DefaultStatistics
-
- getChildrenToParents() - Method in class org.protempa.dest.DefaultStatisticsBuilder
-
- getChildrenToParents() - Method in interface org.protempa.dest.Statistics
-
- getChildrenToParents(String[]) - Method in interface org.protempa.dest.Statistics
-
- getCipherAlgorithm() - Method in interface org.protempa.dest.deid.CipherDeidConfig
-
- getCls() - Method in enum org.protempa.backend.BackendPropertyType
-
- getCode() - Method in class org.protempa.Term
-
- getColumnNameOverride() - Method in class org.protempa.dest.table.AtLeastNColumnSpec
-
- getColumnNameOverride() - Method in class org.protempa.dest.table.CountColumnSpec
-
- getColumnNamePrefixOverride() - Method in class org.protempa.dest.table.DistanceBetweenColumnSpec
-
- getColumnNamePrefixOverride() - Method in class org.protempa.dest.table.PropositionColumnSpec
-
- getColumnNamePrefixOverride() - Method in class org.protempa.dest.table.PropositionValueColumnSpec
-
- getComparator() - Method in class org.protempa.backend.dsb.filter.ValueFilter
-
- getComparator() - Method in class org.protempa.dest.table.Link
-
A comparator for ordering the propositions at the end of the traversal.
- getComparator() - Method in class org.protempa.proposition.value.InequalityNumberValue
-
- getComparator() - Method in class org.protempa.proposition.value.InequalityNumberValueBuilder
-
- getComparators() - Method in class org.protempa.AlgorithmParameter
-
Returns the allowed comparators for this parameter.
- getComparatorString() - Method in enum org.protempa.proposition.value.ValueComparator
-
Gets the string associated with this comparator object.
- getComponent() - Method in class org.protempa.ProtempaEvent
-
- getConfigurationId() - Method in class org.protempa.backend.Configuration
-
- getConfigurations() - Method in interface org.protempa.backend.ConfigurationsProvider
-
- getConfigurations() - Static method in class org.protempa.backend.ConfigurationsProviderManager
-
- getConfigurationsId() - Method in class org.protempa.backend.AbstractBackend
-
- getConfigurationsId() - Method in interface org.protempa.backend.Backend
-
- getConfigurationsId() - Method in class org.protempa.backend.BackendInstanceSpec
-
- getConfigurationsProvider() - Static method in class org.protempa.backend.ConfigurationsProviderManager
-
Gets the configurations provider found by service discovery or set with
{@link #setConfigurationsProvider(org.protempa.backend.ConfigurationsProvider).
- getConfigurationsProviderClassLoader() - Static method in class org.protempa.backend.ConfigurationsProviderManager
-
- getConnection() - Method in class org.protempa.dest.table.RecordHandler
-
- getConstraints() - Method in class org.protempa.dest.table.Link
-
Constraints on properties of the propositions at the end of the
traversal.
- getContextId() - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
- getContextId() - Method in class org.protempa.LowLevelAbstractionDefinition
-
- getContextId() - Method in class org.protempa.proposition.AbstractParameter
-
- getContextId() - Method in class org.protempa.TemporalExtendedAbstractParameterDefinition
-
- getCorrespondingUnit() - Method in class org.protempa.proposition.value.AbsoluteTimeGranularity
-
- getCorrespondingUnit() - Method in interface org.protempa.proposition.value.Granularity
-
- getCorrespondingUnit() - Method in class org.protempa.proposition.value.RelativeDayGranularity
-
- getCorrespondingUnit() - Method in class org.protempa.proposition.value.RelativeHourGranularity
-
- getCounts() - Method in class org.protempa.dest.DefaultStatistics
-
- getCounts(String[]) - Method in class org.protempa.dest.DefaultStatistics
-
- getCounts() - Method in class org.protempa.dest.DefaultStatisticsBuilder
-
- getCounts() - Method in interface org.protempa.dest.Statistics
-
- getCounts(String[]) - Method in interface org.protempa.dest.Statistics
-
- getCreated() - Method in class org.protempa.AbstractPropositionDefinition
-
- getCreated() - Method in interface org.protempa.PropositionDefinition
-
Returns the timestamp of when this proposition definition was created,
if the knowledge source backend maintains this information.
- getCreateDate() - Method in class org.protempa.proposition.AbstractProposition
-
- getCreateDate() - Method in interface org.protempa.proposition.Proposition
-
Gets the timestamp this proposition was created in the source system, or
for derived propositions, the timestamp it was created through the
temporal abstraction process.
- getData() - Method in class org.protempa.DataStreamingEvent
-
- getData() - Method in class org.protempa.proposition.stats.AbstractKaplanMeyer
-
- getDataSource() - Method in class org.protempa.Protempa
-
Gets the data source.
- getDataSourceBackendId() - Method in class org.protempa.backend.AbstractCommonsDataSourceBackend
-
Deprecated.
- getDataSourceBackendInstanceSpecs() - Method in class org.protempa.backend.ConfigurationsSupport
-
- getDataSourceBackendSections() - Method in class org.protempa.backend.Configuration
-
- getDataSourceBackendSpecLoader() - Method in interface org.protempa.backend.BackendProvider
-
- getDataSourceBackendSpecLoader() - Static method in class org.protempa.backend.BackendProviderManager
-
- getDataSourceBackendSpecLoader() - Method in class org.protempa.backend.test.MockBackendProvider
-
- getDate() - Method in class org.protempa.proposition.value.DateValue
-
Gets the date represented by this object as a Java
Date.
- getDate() - Method in class org.protempa.proposition.value.DateValueBuilder
-
- getDateFormat() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getDeclaringPropId() - Method in class org.protempa.PropertyDefinition
-
- getDeclaringPropId() - Method in class org.protempa.PropertyDefinitionBuilder
-
- getDeleteDate() - Method in class org.protempa.proposition.AbstractProposition
-
- getDeleteDate() - Method in interface org.protempa.proposition.Proposition
-
Gets the timestamp this proposition was deleted from the source system,
or for derived propositions, the timestamp it was invalidated due to
data changes.
- getDescription() - Method in interface org.protempa.AbstractionDefinition
-
- getDescription() - Method in class org.protempa.AbstractPropositionDefinition
-
- getDescription() - Method in class org.protempa.backend.BackendPropertySpec
-
- getDescription() - Method in class org.protempa.KeySetSpec
-
- getDescription() - Method in interface org.protempa.PropositionDefinition
-
A longer description of the proposition definition.
- getDescription() - Method in class org.protempa.ProtempaEvent
-
- getDescription() - Method in class org.protempa.Term
-
- getDescription() - Method in class org.protempa.Terminology
-
- getDirectChildren() - Method in class org.protempa.Term
-
Returns a newly-created array of the ids of this term's direct children.
- getDisplayName() - Method in class org.protempa.AbstractPropositionDefinition
-
- getDisplayName() - Method in class org.protempa.backend.AbstractCommonsAlgorithmSourceBackend
-
- getDisplayName() - Method in class org.protempa.backend.AbstractCommonsDataSourceBackend
-
- getDisplayName() - Method in class org.protempa.backend.AbstractCommonsKnowledgeSourceBackend
-
- getDisplayName() - Method in class org.protempa.backend.AbstractCommonsTermSourceBackend
-
- getDisplayName() - Method in class org.protempa.backend.asb.java.JavaAlgorithmBackend
-
- getDisplayName() - Method in interface org.protempa.backend.Backend
-
Returns the name of this backend for display in user interfaces.
- getDisplayName(String) - Method in class org.protempa.backend.BackendInstanceSpec
-
- getDisplayName() - Method in class org.protempa.backend.BackendPropertySpec
-
- getDisplayName() - Method in interface org.protempa.backend.BackendProvider
-
- getDisplayName() - Method in class org.protempa.backend.BackendSpec
-
- getDisplayName() - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- getDisplayName() - Method in class org.protempa.backend.test.MockBackendProvider
-
- getDisplayName() - Method in class org.protempa.backend.test.MockTermSourceBackend
-
- getDisplayName() - Method in class org.protempa.backend.tsb.AbstractTermSourceBackend
-
A default implementation that returns null
- getDisplayName() - Method in class org.protempa.dest.AbstractDestination
-
Returns this destination's display name for user interfaces.
- getDisplayName() - Method in class org.protempa.dest.AbstractQueryResultsHandler
-
Returns this query result handler's display name for user interfaces.
- getDisplayName() - Method in interface org.protempa.dest.Destination
-
Gets the destination's display name for user interfaces.
- getDisplayName() - Method in class org.protempa.dest.keyloader.KeyLoaderDestination
-
- getDisplayName() - Method in class org.protempa.dest.keyloader.KeyLoaderQueryResultsHandler
-
- getDisplayName() - Method in interface org.protempa.dest.QueryResultsHandler
-
Gets the query result handler's display name for user interfaces.
- getDisplayName() - Method in class org.protempa.ExtendedPropositionDefinition
-
- getDisplayName() - Method in class org.protempa.KeySetSpec
-
- getDisplayName() - Method in class org.protempa.PropertyDefinition
-
Returns the property's displayName.
- getDisplayName() - Method in class org.protempa.PropertyDefinitionBuilder
-
- getDisplayName() - Method in interface org.protempa.PropositionDefinition
-
This proposition definition's display name.
- getDisplayName() - Method in class org.protempa.ReferenceDefinition
-
- getDisplayName() - Method in class org.protempa.Term
-
- getDisplayName() - Method in class org.protempa.valueset.ValueSet
-
- getDisplayName() - Method in class org.protempa.valueset.ValueSetBuilder
-
- getDisplayName() - Method in class org.protempa.valueset.ValueSetElement
-
Returns the value's display name.
- getDisplayName() - Method in class org.protempa.valueset.ValueSetElementBuilder
-
- getDisplayNameHeading() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getDisplayNameHeading() - Method in class org.protempa.dest.table.OutputConfig
-
- getDownloadDate() - Method in class org.protempa.proposition.AbstractProposition
-
- getDownloadDate() - Method in interface org.protempa.proposition.Proposition
-
Gets the timestamp this proposition was downloaded from the source
system.
- getDownloaded() - Method in class org.protempa.AbstractPropositionDefinition
-
- getDownloaded() - Method in interface org.protempa.PropositionDefinition
-
Returns the timestamp of when this proposition definition's information
was downloaded from its source, e.g., a terminology standard, if such
information is available.
- getEdge(Object, Object) - Method in class org.protempa.graph.DirectedGraph
-
- getEdgeCount() - Method in class org.protempa.graph.DirectedGraph
-
Get the total number of edges.
- getElements() - Method in class org.protempa.proposition.value.ValueListBuilder
-
- getEncryptionInstance() - Method in interface org.protempa.dest.deid.DeidConfig
-
- getEnvironmentName() - Method in class org.protempa.datastore.AbstractDataStoreCreator
-
- getExtendedPropositionDefinitions() - Method in class org.protempa.HighLevelAbstractionDefinition
-
Gets the extended proposition definitions that are part of this
abstraction definition.
- getFalseOutput() - Method in class org.protempa.dest.table.AtLeastNColumnSpec
-
- getFilters() - Method in class org.protempa.query.DefaultQueryBuilder
-
Gets the filters to be applied to this query.
- getFilters() - Method in class org.protempa.query.Query
-
Gets the filters to be applied to this query.
- getFinish() - Method in class org.protempa.backend.dsb.filter.PositionFilter
-
Returns the finish position supplied in the constructor.
- getFinish() - Method in class org.protempa.graph.Edge
-
- getFinishAbstractParamValue() - Method in class org.protempa.TemporalPatternOffset
-
- getFinishFormattedLong() - Method in class org.protempa.proposition.TemporalProposition
-
Returns the latest valid time of this proposition as a long string.
- getFinishFormattedMedium() - Method in class org.protempa.proposition.TemporalProposition
-
Returns the earliest valid time of this proposition as a medium-length
string.
- getFinishFormattedShort() - Method in class org.protempa.proposition.TemporalProposition
-
Returns the earliest valid time of this proposition as a short string.
- getFinishGranularity() - Method in class org.protempa.backend.dsb.filter.PositionFilter
-
Returns the
Granularity with which to interpret the finish
position.
- getFinishGranularity() - Method in class org.protempa.proposition.interval.Interval
-
Returns the finish granularity.
- getFinishGranularity() - Method in class org.protempa.proposition.Segment
-
- getFinishHeading() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getFinishHeading() - Method in class org.protempa.dest.table.OutputConfig
-
- getFinishIntervalSide() - Method in class org.protempa.ContextOffset
-
- getFinishIntervalSide() - Method in class org.protempa.TemporalPatternOffset
-
- getFinishOffset() - Method in class org.protempa.ContextOffset
-
- getFinishOffset() - Method in class org.protempa.TemporalPatternOffset
-
- getFinishOffsetUnits() - Method in class org.protempa.ContextOffset
-
- getFinishOffsetUnits() - Method in class org.protempa.TemporalPatternOffset
-
- getFinishSide() - Method in class org.protempa.backend.dsb.filter.PositionFilter
-
Returns the side of the proposition to which to apply the upper bound.
- getFinishTemporalExtendedPropositionDefinition() - Method in class org.protempa.TemporalPatternOffset
-
- getFirstIndex() - Method in class org.protempa.proposition.Segment
-
- getFirstTemporalExtendedPropositionDefinition() - Method in class org.protempa.SequentialTemporalPatternDefinition
-
- getFormatted() - Method in class org.protempa.cli.CLI.Argument
-
Gets the argument formatted as a string suitable for a usage
statement.
- getFormatted() - Method in class org.protempa.proposition.value.BooleanValue
-
- getFormatted() - Method in class org.protempa.proposition.value.DateValue
-
- getFormatted() - Method in class org.protempa.proposition.value.InequalityNumberValue
-
- getFormatted() - Method in class org.protempa.proposition.value.NominalValue
-
- getFormatted() - Method in class org.protempa.proposition.value.NumberValue
-
- getFormatted() - Method in class org.protempa.proposition.value.OrdinalValue
-
- getFormatted() - Method in interface org.protempa.proposition.value.Value
-
Returns a string representing this value for display purposes.
- getFormatted() - Method in class org.protempa.proposition.value.ValueList
-
- getFromAbstraction(String, UniqueId, Segment<? extends TemporalProposition>, List<? extends TemporalProposition>, Value, TemporalPatternOffset, TemporalExtendedPropositionDefinition[], String) - Static method in class org.protempa.AbstractParameterFactory
-
- getFromIndex() - Method in class org.protempa.dest.table.Link
-
The start index of the propositions of interest at the end of the
traversal step, after applying the proposition id constraints, property
constraints and a comparator.
- getGapFunction() - Method in class org.protempa.AbstractAbstractionDefinition
-
- getGapFunction() - Method in interface org.protempa.AbstractionDefinition
-
- getGapFunction() - Method in class org.protempa.ContextDefinition
-
- getGapFunctionBetweenValues() - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
- getGranularity() - Method in class org.protempa.proposition.PrimitiveParameter
-
Returns the granularity of this parameter's timestamp.
- getGranularityFactory() - Method in class org.protempa.backend.dsb.AbstractDataSourceBackend
-
- getGranularityFactory() - Method in interface org.protempa.backend.dsb.DataSourceBackend
-
- getGranularityFactory() - Method in interface org.protempa.DataSource
-
Returns an object for accessing the granularity of returned data from the
schema adaptor for this data source.
- getGranularityFactory() - Method in class org.protempa.DataSourceImpl
-
Returns an object for accessing the granularity of returned data from the
schema adaptor for this data source.
- getId() - Method in class org.protempa.AbstractAlgorithm
-
- getId() - Method in class org.protempa.AbstractPropositionDefinition
-
- getId() - Method in interface org.protempa.Algorithm
-
The algorithm's unique id.
- getId() - Method in class org.protempa.backend.AbstractBackend
-
- getId() - Method in class org.protempa.backend.AbstractCommonsAlgorithmSourceBackend
-
- getId() - Method in class org.protempa.backend.AbstractCommonsDataSourceBackend
-
- getId() - Method in class org.protempa.backend.AbstractCommonsKnowledgeSourceBackend
-
- getId() - Method in class org.protempa.backend.AbstractCommonsTermSourceBackend
-
- getId() - Method in interface org.protempa.backend.Backend
-
- getId() - Method in class org.protempa.backend.BackendSpec
-
- getId() - Method in class org.protempa.DataSourceBackendSourceSystem
-
- getId() - Method in class org.protempa.dest.AbstractDestination
-
- getId() - Method in class org.protempa.dest.AbstractQueryResultsHandler
-
- getId() - Method in class org.protempa.dest.deid.DeidentifiedDestination
-
- getId() - Method in class org.protempa.dest.deid.DeidentifiedQueryResultsHandler
-
- getId() - Method in interface org.protempa.dest.Destination
-
Gets the destination's identifier string for logging and internal
purposes.
- getId() - Method in class org.protempa.dest.keyloader.KeyLoaderDestination
-
- getId() - Method in class org.protempa.dest.keyloader.KeyLoaderQueryResultsHandler
-
- getId() - Method in interface org.protempa.dest.QueryResultsHandler
-
Gets the query result handler's identifier string for logging and
internal purposes.
- getId() - Method in class org.protempa.KeySetSpec
-
- getId() - Method in class org.protempa.LowLevelAbstractionValueDefinition
-
- getId() - Method in class org.protempa.PropertyDefinition
-
Returns the property's id, which is unique in combination with a
proposition id.
- getId() - Method in class org.protempa.PropertyDefinitionBuilder
-
- getId() - Method in class org.protempa.proposition.AbstractProposition
-
- getId() - Method in class org.protempa.proposition.DefaultLocalUniqueId
-
- getId() - Method in interface org.protempa.proposition.LocalUniqueId
-
Gets a string identifier that is unique to a proposition for all
propositions with its proposition id.
- getId() - Method in interface org.protempa.proposition.LocalUniqueIdValuesProvider
-
- getId() - Method in interface org.protempa.proposition.Proposition
-
Gets this proposition's data type.
- getId() - Method in class org.protempa.proposition.ProviderBasedLocalUniqueId
-
- getId() - Method in interface org.protempa.PropositionDefinition
-
This proposition definition's id.
- getId() - Method in class org.protempa.ReferenceDefinition
-
Gets the id of the reference.
- getId() - Method in class org.protempa.Term
-
- getId() - Method in class org.protempa.valueset.ValueSet
-
Returns the value set's unique identifier.
- getId() - Method in class org.protempa.valueset.ValueSetBuilder
-
- getIdHeading() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getIdHeading() - Method in class org.protempa.dest.table.OutputConfig
-
- getInDataSource() - Method in class org.protempa.AbstractPropositionDefinition
-
- getInDataSource() - Method in interface org.protempa.PropositionDefinition
-
- getIndex() - Method in class org.protempa.proposition.value.OrdinalValue
-
- getIndex() - Method in class org.protempa.proposition.value.OrdinalValueBuilder
-
- getInducedBy() - Method in class org.protempa.ContextDefinition
-
Returns the id of the proposition definition that induces this context.
- getInequality() - Method in class org.protempa.proposition.value.InequalityNumberValue
-
- getInferredPropositionIds(KnowledgeSource, String[]) - Method in class org.protempa.dest.table.AtLeastNColumnSpec
-
- getInferredPropositionIds(KnowledgeSource, String[]) - Method in class org.protempa.dest.table.ConstantColumnSpec
-
- getInferredPropositionIds(KnowledgeSource, String[]) - Method in class org.protempa.dest.table.CountColumnSpec
-
- getInferredPropositionIds(KnowledgeSource, String[]) - Method in class org.protempa.dest.table.Derivation
-
- getInferredPropositionIds(KnowledgeSource, String[]) - Method in class org.protempa.dest.table.DistanceBetweenColumnSpec
-
- getInferredPropositionIds(KnowledgeSource, String[]) - Method in class org.protempa.dest.table.Link
-
Aggregates and returns the possible proposition ids on the right-hand
side of the link.
- getInferredPropositionIds(KnowledgeSource, String[]) - Method in class org.protempa.dest.table.PropositionColumnSpec
-
- getInferredPropositionIds(KnowledgeSource, String[]) - Method in class org.protempa.dest.table.PropositionValueColumnSpec
-
- getInferredPropositionIds(KnowledgeSource, String[]) - Method in class org.protempa.dest.table.Reference
-
- getInferredPropositionIds(KnowledgeSource, String[]) - Method in interface org.protempa.dest.table.TableColumnSpec
-
Infers the ids of the propositions corresponding to the contents of this
column.
- getInstance() - Method in class org.protempa.backend.BackendInstanceSpec
-
- getInstance() - Method in class org.protempa.backend.BackendSourceIdFactory
-
- getInstance() - Method in class org.protempa.backend.test.MockBackendInstanceSpecFactory
-
- getInstance(String) - Static method in class org.protempa.DataSourceBackendSourceSystem
-
- getInstance(RuleBase) - Static method in class org.protempa.datastore.WorkingMemoryStoreCreator
-
Returns an instance of this class, which can be used to get either a
permanent or temporary store.
- getInstance(String) - Static method in class org.protempa.DefaultSourceId
-
- getInstance(String) - Method in class org.protempa.DefaultSourceIdFactory
-
- getInstance() - Method in class org.protempa.graph.WeightFactory
-
- getInstance(Number) - Method in class org.protempa.graph.WeightFactory
-
- getInstance(KnowledgeSource, Collection<PropositionDefinition>, boolean) - Method in class org.protempa.KnowledgeSourceCacheFactory
-
- getInstance() - Static method in class org.protempa.NotRecordedSourceId
-
- getInstance(String) - Static method in class org.protempa.proposition.DataSourceBackendId
-
Creates a data source backend id.
- getInstance() - Method in class org.protempa.proposition.DefaultUniqueIdFactory
-
- getInstance() - Static method in class org.protempa.proposition.DerivedSourceId
-
- getInstance() - Method in class org.protempa.proposition.interval.AbsoluteTimeIntervalFactory
-
- getInstance(Date, Granularity) - Method in class org.protempa.proposition.interval.AbsoluteTimeIntervalFactory
-
- getInstance(Date, Granularity, Date, Granularity) - Method in class org.protempa.proposition.interval.AbsoluteTimeIntervalFactory
-
- getInstance(Date, Date, Granularity, Date, Date, Granularity) - Method in class org.protempa.proposition.interval.AbsoluteTimeIntervalFactory
-
- getInstance(Long, Long, Granularity, Long, Long, Granularity) - Method in class org.protempa.proposition.interval.IntervalFactory
-
Returns an interval specified by the given minimum start, maximum start,
minimum finish and maximum finish and corresponding granularities.
- getInstance(Long, Granularity, Long, Granularity) - Method in class org.protempa.proposition.interval.IntervalFactory
-
Returns at interval specified by the given start and finish and
granularities.
- getInstance(Long, Granularity) - Method in class org.protempa.proposition.interval.IntervalFactory
-
Returns an interval representing a position on the timeline or other axis
at a specified granularity.
- getInstance() - Method in class org.protempa.proposition.interval.IntervalFactory
-
Returns an unbounded interval.
- getInstance() - Method in class org.protempa.proposition.ProviderBasedUniqueIdFactory
-
- getInstance(String, String, String) - Method in class org.protempa.proposition.TemporalAbstractParameterFactory
-
- getInstance(String, Date, Date) - Method in class org.protempa.proposition.TemporalAbstractParameterFactory
-
- getInstance(String, String, SourceSystem) - Method in class org.protempa.proposition.TemporalEventFactory
-
- getInstance(String, Date, SourceSystem) - Method in class org.protempa.proposition.TemporalEventFactory
-
- getInstance(String, String, String, SourceSystem) - Method in class org.protempa.proposition.TemporalEventFactory
-
- getInstance(String, Date, Date, SourceSystem) - Method in class org.protempa.proposition.TemporalEventFactory
-
- getInstance(String, String, SourceSystem) - Method in class org.protempa.proposition.TemporalPrimitiveParameterFactory
-
- getInstance(String, String, Value, SourceSystem) - Method in class org.protempa.proposition.TemporalPrimitiveParameterFactory
-
- getInstance(String, Date, SourceSystem) - Method in class org.protempa.proposition.TemporalPrimitiveParameterFactory
-
- getInstance() - Method in interface org.protempa.proposition.UniqueIdFactory
-
- getInstance(Date) - Static method in class org.protempa.proposition.value.DateValue
-
Constructs a new date value from a Java date object.
- getInstance() - Static method in class org.protempa.proposition.value.DateValue
-
Constructs a new date value representing the current time.
- getInstance(String) - Static method in class org.protempa.proposition.value.NominalValue
-
Creates a new nominal value.
- getInstance(double) - Static method in class org.protempa.proposition.value.NumberValue
-
- getInstance(long) - Static method in class org.protempa.proposition.value.NumberValue
-
- getInstance(BigDecimal) - Static method in class org.protempa.proposition.value.NumberValue
-
- getInstance(V...) - Static method in class org.protempa.proposition.value.ValueList
-
Creates a list of the provided elements in the same order.
- getInstance(E) - Method in interface org.protempa.SourceIdFactory
-
- getInterpretationContext() - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
- getInterval() - Method in class org.protempa.proposition.CompoundInterval
-
Gets the interval for this compound interval.
- getInterval() - Method in class org.protempa.proposition.Segment
-
- getInterval() - Method in class org.protempa.proposition.TemporalProposition
-
The range of time over which this parameter's value is true.
- getInValueType() - Method in class org.protempa.AbstractAlgorithm
-
- getInValueType() - Method in interface org.protempa.Algorithm
-
- getInverseIsA() - Method in class org.protempa.AbstractPropositionDefinition
-
- getInverseIsA() - Method in interface org.protempa.PropositionDefinition
-
Returns the ids of the proposition definitions that have an is-a
relationship with this proposition definition.
- getInverseIsA() - Method in class org.protempa.Term
-
Returns a newly-created array of the ids of the terms with which this
term has an inverse is-a relationship.
- getKey(String) - Method in interface org.protempa.dest.deid.CipherDeidConfig
-
Returns a secret key used for de-identification.
- getKeyAlgorithm() - Method in interface org.protempa.dest.deid.CipherDeidConfig
-
- getKeyId() - Method in class org.protempa.DataStreamingEvent
-
- getKeyId() - Method in class org.protempa.QueryResults.QueryResultsEntry
-
- getKeyIdComparator() - Method in class org.protempa.backend.dsb.AbstractDataSourceBackend
-
- getKeyIdComparator() - Method in interface org.protempa.backend.dsb.DataSourceBackend
-
- getKeyIds() - Method in class org.protempa.query.DefaultQueryBuilder
-
Returns the key ids to be queried.
- getKeyIds() - Method in class org.protempa.query.Query
-
Returns the key ids to be queried.
- getKeyIds() - Method in class org.protempa.QueryResults
-
- getKeyType() - Method in class org.protempa.backend.AbstractCommonsDataSourceBackend
-
- getKeyType() - Method in class org.protempa.backend.dsb.AbstractDataSourceBackend
-
- getKeyType() - Method in interface org.protempa.backend.dsb.DataSourceBackend
-
- getKeyType() - Method in interface org.protempa.DataSource
-
Returns a string representing the type of keys in this data source (e.g.,
patient, case).
- getKeyType() - Method in class org.protempa.DataSourceImpl
-
Returns a string representing the type of keys in this data source (e.g.,
patient, case).
- getKeyTypeDisplayName() - Method in class org.protempa.backend.dsb.AbstractDataSourceBackend
-
- getKeyTypeDisplayName() - Method in interface org.protempa.backend.dsb.DataSourceBackend
-
- getKeyTypeDisplayName() - Method in interface org.protempa.DataSource
-
Returns a string representing the type of keys in this data source (e.g.,
patient, case) for display purposes.
- getKeyTypeDisplayName() - Method in class org.protempa.DataSourceImpl
-
Returns a string representing the type of keys in this data source (e.g.,
patient, case) for display purposes.
- getKeyTypePluralDisplayName() - Method in class org.protempa.backend.dsb.AbstractDataSourceBackend
-
- getKeyTypePluralDisplayName() - Method in interface org.protempa.backend.dsb.DataSourceBackend
-
- getKeyTypePluralDisplayName() - Method in interface org.protempa.DataSource
-
Returns a plural string representing the type of keys in this data source
(e.g., patient, case) for display purposes.
- getKeyTypePluralDisplayName() - Method in class org.protempa.DataSourceImpl
-
Returns a plural string representing the type of keys in this data source
(e.g., patient, case) for display purposes.
- getKnowledgeSource() - Method in class org.protempa.Protempa
-
Gets the knowledge source.
- getKnowledgeSourceBackendInstanceSpecs() - Method in class org.protempa.backend.ConfigurationsSupport
-
- getKnowledgeSourceBackendSections() - Method in class org.protempa.backend.Configuration
-
- getKnowledgeSourceBackendSpecLoader() - Method in interface org.protempa.backend.BackendProvider
-
- getKnowledgeSourceBackendSpecLoader() - Static method in class org.protempa.backend.BackendProviderManager
-
- getKnowledgeSourceBackendSpecLoader() - Method in class org.protempa.backend.test.MockBackendProvider
-
- getKnowledgeSourceSearchResults(String) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
- getKnowledgeSourceSearchResults(String) - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- getLastIndex() - Method in class org.protempa.proposition.Segment
-
- getLength() - Method in class org.protempa.proposition.value.AbstractTimeUnit
-
- getLength() - Method in class org.protempa.proposition.value.RelativeDayGranularity
-
- getLength() - Method in class org.protempa.proposition.value.RelativeHourGranularity
-
- getLengthFormattedLong() - Method in class org.protempa.proposition.TemporalProposition
-
- getLengthFormattedMedium() - Method in class org.protempa.proposition.TemporalProposition
-
- getLengthFormattedShort() - Method in class org.protempa.proposition.TemporalProposition
-
- getLengthHeading() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getLengthHeading() - Method in class org.protempa.dest.table.OutputConfig
-
- getLengthUnit() - Method in class org.protempa.proposition.interval.Interval
-
Gets the units of the length.
- getLevel() - Method in class org.protempa.ProtempaEvent
-
- getLine() - Method in class org.protempa.backend.dsb.DataValidationEvent
-
- getLinks() - Method in class org.protempa.dest.table.AtLeastNColumnSpec
-
- getLinks() - Method in class org.protempa.dest.table.CountColumnSpec
-
- getLinks() - Method in class org.protempa.dest.table.DistanceBetweenColumnSpec
-
- getLinks() - Method in class org.protempa.dest.table.PropositionColumnSpec
-
- getLinks() - Method in class org.protempa.dest.table.PropositionValueColumnSpec
-
- getLocalUniqueId() - Method in class org.protempa.proposition.UniqueId
-
- getLongDateFormatNoYear() - Method in class org.protempa.proposition.value.AbsoluteTimeGranularity
-
- getLongFormat() - Method in class org.protempa.proposition.value.AbsoluteTimeGranularity
-
- getLongFormat() - Method in class org.protempa.proposition.value.AbstractTimeUnit
-
- getLongFormat() - Method in interface org.protempa.proposition.value.Granularity
-
- getLongFormat() - Method in class org.protempa.proposition.value.RelativeDayGranularity
-
- getLongFormat() - Method in class org.protempa.proposition.value.RelativeHourGranularity
-
- getLongFormat() - Method in interface org.protempa.proposition.value.Unit
-
- getLowerBound() - Method in class org.protempa.valueset.ValueSet
-
Gets the lower bound of this value set, if specified.
- getLowerBoundBuilder() - Method in class org.protempa.valueset.ValueSetBuilder
-
- getLowLevelAbstractionDefinition() - Method in class org.protempa.LowLevelAbstractionValueDefinition
-
- getLowLevelAbstractionId() - Method in class org.protempa.ValueClassification
-
- getLowLevelAbstractionIds() - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
Gets the IDs of the low-level abstraction that this abstraction is
abstracted from.
- getLowLevelAbstractionValue() - Method in class org.protempa.ValueClassification
-
- getMatchingPropIds(String) - Method in interface org.protempa.KnowledgeSource
-
- getMatchingPropIds(String) - Method in class org.protempa.KnowledgeSourceImpl
-
Gets the proposition Definitions from each backend that match the
searchKey
- getMaxDistanceBetween() - Method in class org.protempa.proposition.interval.Relation
-
- getMaxDistanceBetweenFinishes() - Method in class org.protempa.proposition.interval.Relation
-
- getMaxDistanceBetweenFinishesUnits() - Method in class org.protempa.proposition.interval.Relation
-
- getMaxDistanceBetweenStarts() - Method in class org.protempa.proposition.interval.Relation
-
- getMaxDistanceBetweenStartsUnits() - Method in class org.protempa.proposition.interval.Relation
-
- getMaxDistanceBetweenUnits() - Method in class org.protempa.proposition.interval.Relation
-
- getMaxFinish() - Method in class org.protempa.proposition.interval.Interval
-
Gets the maximum finish in the current finish granularity.
- getMaximumDuration() - Method in class org.protempa.LowLevelAbstractionDefinition
-
- getMaximumDurationUnits() - Method in class org.protempa.LowLevelAbstractionDefinition
-
- getMaximumFinish() - Method in class org.protempa.backend.dsb.filter.PositionFilter
-
Returns the maximum finish position in Protempa's
Long
representation.
- getMaximumFinish() - Method in class org.protempa.proposition.interval.DefaultInterval
-
*************************************************************************
MAXIMUM START
- getMaximumFinish() - Method in class org.protempa.proposition.interval.Interval
-
Gets the maximum finish in internal PROTEMPA units.
- getMaximumGap() - Method in class org.protempa.MinMaxGapFunction
-
- getMaximumGap() - Method in class org.protempa.SimpleGapFunction
-
Returns the gap function's maximum gap value.
- getMaximumGapBetweenValues() - Method in class org.protempa.LowLevelAbstractionDefinition
-
- getMaximumGapBetweenValuesUnits() - Method in class org.protempa.LowLevelAbstractionDefinition
-
- getMaximumGapUnit() - Method in class org.protempa.MinMaxGapFunction
-
- getMaximumGapUnit() - Method in class org.protempa.SimpleGapFunction
-
Returns the units of the maximum gap value.
- getMaximumLength() - Method in class org.protempa.proposition.interval.DefaultInterval
-
*************************************************************************
MAXIMUM DURATION
- getMaximumLength() - Method in class org.protempa.proposition.interval.Interval
-
Gets the maximum length in internal PROTEMPA units.
- getMaximumNumberOfValues() - Method in class org.protempa.AbstractAlgorithm
-
- getMaximumNumberOfValues() - Method in interface org.protempa.Algorithm
-
Gets the default maximum sliding window width.
- getMaximumNumberOfValues() - Method in class org.protempa.LowLevelAbstractionDefinition
-
- getMaximumStart() - Method in class org.protempa.backend.dsb.filter.PositionFilter
-
Returns the maximum start position in Protempa's
Long
representation.
- getMaximumStart() - Method in class org.protempa.proposition.interval.DefaultInterval
-
*************************************************************************
MAXIMUM START
- getMaximumStart() - Method in class org.protempa.proposition.interval.Interval
-
Gets the maximum start in internal PROTEMPA units.
- getMaxIndex() - Method in class org.protempa.SliceDefinition
-
Gets the upper limit of the range for this slice (exclusive).
- getMaxLength() - Method in class org.protempa.proposition.interval.Interval
-
Gets the maximum length in the finest granularity of those defined for
the start and finish.
- getMaxLength() - Method in class org.protempa.TemporalExtendedPropositionDefinition
-
- getMaxLengthUnit() - Method in class org.protempa.TemporalExtendedPropositionDefinition
-
- getMaxOverlapping() - Method in class org.protempa.LowLevelAbstractionDefinition
-
Return the value of the max-overlapping restart search directive.
- getMaxSpan() - Method in class org.protempa.proposition.interval.Relation
-
- getMaxSpanUnits() - Method in class org.protempa.proposition.interval.Relation
-
- getMaxStart() - Method in class org.protempa.proposition.interval.Interval
-
Gets the maximum start in the current start granularity.
- getMediumDateFormatNoYear() - Method in class org.protempa.proposition.value.AbsoluteTimeGranularity
-
- getMediumFormat() - Method in class org.protempa.proposition.value.AbsoluteTimeGranularity
-
- getMediumFormat() - Method in class org.protempa.proposition.value.AbstractTimeUnit
-
- getMediumFormat() - Method in interface org.protempa.proposition.value.Granularity
-
- getMediumFormat() - Method in class org.protempa.proposition.value.RelativeDayGranularity
-
- getMediumFormat() - Method in class org.protempa.proposition.value.RelativeHourGranularity
-
- getMediumFormat() - Method in interface org.protempa.proposition.value.Unit
-
- getMessage() - Method in class org.protempa.backend.dsb.DataValidationEvent
-
- getMinDistanceBetween() - Method in class org.protempa.proposition.interval.Relation
-
- getMinDistanceBetweenFinishes() - Method in class org.protempa.proposition.interval.Relation
-
- getMinDistanceBetweenFinishesUnits() - Method in class org.protempa.proposition.interval.Relation
-
- getMinDistanceBetweenStarts() - Method in class org.protempa.proposition.interval.Relation
-
- getMinDistanceBetweenStartsUnits() - Method in class org.protempa.proposition.interval.Relation
-
- getMinDistanceBetweenUnits() - Method in class org.protempa.proposition.interval.Relation
-
- getMinFinish() - Method in class org.protempa.proposition.interval.Interval
-
Gets the minimum finish in the current finish granularity.
- getMinimumDuration() - Method in class org.protempa.LowLevelAbstractionDefinition
-
- getMinimumDurationUnits() - Method in class org.protempa.LowLevelAbstractionDefinition
-
- getMinimumFinish() - Method in class org.protempa.backend.dsb.filter.PositionFilter
-
Returns the minimum finish position in Protempa's
Long
representation.
- getMinimumFinish() - Method in class org.protempa.proposition.interval.DefaultInterval
-
*************************************************************************
MINIMUM FINISH
- getMinimumFinish() - Method in class org.protempa.proposition.interval.Interval
-
Gets the minimum finish in internal PROTEMPA units.
- getMinimumGap() - Method in class org.protempa.MinMaxGapFunction
-
- getMinimumGapBetweenValues() - Method in class org.protempa.LowLevelAbstractionDefinition
-
- getMinimumGapBetweenValuesUnits() - Method in class org.protempa.LowLevelAbstractionDefinition
-
- getMinimumGapUnit() - Method in class org.protempa.MinMaxGapFunction
-
- getMinimumLength() - Method in class org.protempa.proposition.interval.DefaultInterval
-
*************************************************************************
MINIMUM DURATION
- getMinimumLength() - Method in class org.protempa.proposition.interval.Interval
-
Gets the minimum length in internal PROTEMPA units.
- getMinimumNumberOfValues() - Method in class org.protempa.AbstractAlgorithm
-
- getMinimumNumberOfValues() - Method in interface org.protempa.Algorithm
-
Gets the default minimum sliding window width.
- getMinimumNumberOfValues() - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
Gets the minimum number of consecutive intervals that must have the same
value before this abstraction is asserted.
- getMinimumNumberOfValues() - Method in class org.protempa.LowLevelAbstractionDefinition
-
- getMinimumStart() - Method in class org.protempa.backend.dsb.filter.PositionFilter
-
Returns the minimum start position in Protempa's
Long
representation.
- getMinimumStart() - Method in class org.protempa.proposition.interval.DefaultInterval
-
*************************************************************************
MINIMUM START
- getMinimumStart() - Method in class org.protempa.proposition.interval.Interval
-
Gets the minimum start in internal PROTEMPA units.
- getMinIndex() - Method in class org.protempa.SliceDefinition
-
Gets the lower limit of the range for this slice (inclusive).
- getMinLength() - Method in class org.protempa.proposition.interval.Interval
-
Gets the minimum length in the finest granularity of those defined for
the start and finish.
- getMinLength() - Method in class org.protempa.TemporalExtendedPropositionDefinition
-
- getMinLengthUnit() - Method in class org.protempa.TemporalExtendedPropositionDefinition
-
- getMinSpan() - Method in class org.protempa.proposition.interval.Relation
-
- getMinSpanUnits() - Method in class org.protempa.proposition.interval.Relation
-
- getMinStart() - Method in class org.protempa.proposition.interval.Interval
-
Gets the minimum start in the current start granularity.
- getN() - Method in class org.protempa.dest.table.AtLeastNColumnSpec
-
- getName() - Method in class org.protempa.AlgorithmParameter
-
Returns the name of this parameter.
- getName() - Method in class org.protempa.Attribute
-
- getName() - Method in class org.protempa.AttributeBuilder
-
- getName() - Method in class org.protempa.backend.BackendPropertySpec
-
- getName() - Method in class org.protempa.cli.CLI.Argument
-
Returns the argument's name.
- getName() - Method in class org.protempa.datastore.UniqueIdUniqueIdStoreCreator.Reference
-
- getName() - Method in class org.protempa.proposition.value.AbsoluteTimeGranularity
-
- getName() - Method in class org.protempa.proposition.value.AbstractTimeUnit
-
- getName() - Method in interface org.protempa.proposition.value.Granularity
-
Returns the granularity's singular name.
- getName() - Method in class org.protempa.proposition.value.RelativeDayGranularity
-
- getName() - Method in class org.protempa.proposition.value.RelativeHourGranularity
-
- getName() - Method in interface org.protempa.proposition.value.Unit
-
Returns the unit's singular name.
- getName() - Method in class org.protempa.query.DefaultQueryBuilder
-
- getName() - Method in class org.protempa.query.Query
-
Returns this query's identifier.
- getName() - Method in class org.protempa.Terminology
-
- getNumber() - Method in class org.protempa.proposition.value.InequalityNumberValue
-
- getNumber() - Method in class org.protempa.proposition.value.NumberValue
-
- getNumber() - Method in interface org.protempa.proposition.value.NumericalValue
-
Gets this value as a number.
- getNumberOfColumns() - Method in class org.protempa.dest.table.OutputConfig
-
- getNumberOfKeys() - Method in class org.protempa.dest.DefaultStatistics
-
- getNumberOfKeys() - Method in class org.protempa.dest.DefaultStatisticsBuilder
-
- getNumberOfKeys() - Method in interface org.protempa.dest.Statistics
-
- getNumberValue() - Method in class org.protempa.proposition.value.InequalityNumberValue
-
- getNumberValue() - Method in class org.protempa.proposition.value.NumberValue
-
- getNumberValue() - Method in interface org.protempa.proposition.value.NumericalValue
-
Gets the number value component of this numerical value.
- getNumericalId() - Method in class org.protempa.proposition.DefaultLocalUniqueId
-
- getNumericalId() - Method in interface org.protempa.proposition.LocalUniqueId
-
Gets a number that is to unique to the proposition for all propositions
for a keyid with the same proposition id.
- getNumericalId() - Method in interface org.protempa.proposition.LocalUniqueIdValuesProvider
-
- getNumericalId() - Method in class org.protempa.proposition.ProviderBasedLocalUniqueId
-
- getNumInstances() - Method in class org.protempa.dest.table.PropositionColumnSpec
-
- getOffset() - Method in class org.protempa.ContextDefinition
-
Returns the start and finish of an interval of this context relative to
its inducing interval.
- getOffset(String) - Method in interface org.protempa.dest.deid.DeidConfig
-
- getOutputConfig() - Method in class org.protempa.dest.table.PropositionColumnSpec
-
- getParameterComp(String) - Method in class org.protempa.LowLevelAbstractionValueDefinition
-
- getParameterComps() - Method in class org.protempa.LowLevelAbstractionValueDefinition
-
- getParameters() - Method in class org.protempa.AbstractAlgorithm
-
- getParameters() - Method in interface org.protempa.Algorithm
-
- getParameters() - Method in class org.protempa.LowLevelAbstractionValueDefinition
-
- getParameterValue(String) - Method in class org.protempa.LowLevelAbstractionValueDefinition
-
- getPersistentStore() - Method in interface org.protempa.datastore.DataStoreCreator
-
Returns a permanent store with the given name.
- getPersistentStore() - Method in class org.protempa.datastore.PropositionStoreCreator
-
- getPersistentStore() - Method in class org.protempa.datastore.UniqueIdUniqueIdStoreCreator
-
- getPersistentStore() - Method in class org.protempa.datastore.WorkingMemoryStoreCreator
-
- getPluralName() - Method in class org.protempa.proposition.value.AbsoluteTimeGranularity
-
- getPluralName() - Method in class org.protempa.proposition.value.AbstractTimeUnit
-
- getPluralName() - Method in interface org.protempa.proposition.value.Granularity
-
Returns the granularity's plural name.
- getPluralName() - Method in class org.protempa.proposition.value.RelativeDayGranularity
-
- getPluralName() - Method in class org.protempa.proposition.value.RelativeHourGranularity
-
- getPluralName() - Method in interface org.protempa.proposition.value.Unit
-
Returns the unit's plural name.
- getPoint() - Method in exception org.protempa.proposition.stats.RegressionLine.NullValueException
-
- getPosition() - Method in class org.protempa.proposition.PrimitiveParameter
-
Returns this parameter's timestamp (or other kind of position value).
- getPositionFormat() - Method in class org.protempa.dest.table.OutputConfig
-
- getPositionFormattedLong() - Method in class org.protempa.proposition.PrimitiveParameter
-
Returns this parameter's timestamp as a long formatted string.
- getPositionFormattedMedium() - Method in class org.protempa.proposition.PrimitiveParameter
-
Returns this parameter's timestamp as a medium-length formatted string.
- getPositionFormattedShort() - Method in class org.protempa.proposition.PrimitiveParameter
-
Returns this parameter's timestamp as a short formatted string.
- getProperty(String) - Method in class org.protempa.backend.BackendInstanceSpec
-
- getProperty() - Method in class org.protempa.backend.dsb.filter.PropertyValueFilter
-
Gets the name of the specified property.
- getProperty(String) - Method in class org.protempa.proposition.AbstractProposition
-
- getProperty(String) - Method in interface org.protempa.proposition.Proposition
-
Gets the value of the specified property.
- getPropertyConstraints() - Method in class org.protempa.ExtendedPropositionDefinition
-
- getPropertyDefinitions() - Method in class org.protempa.AbstractPropositionDefinition
-
- getPropertyDefinitions() - Method in interface org.protempa.PropositionDefinition
-
- getPropertyHeading(String) - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getPropertyHeading(String) - Method in class org.protempa.dest.table.OutputConfig
-
- getPropertyHeadings() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getPropertyHeadings() - Method in class org.protempa.dest.table.OutputConfig
-
- getPropertyName() - Method in class org.protempa.dest.table.PropertyConstraint
-
Returns the name of the property.
- getPropertyName() - Method in class org.protempa.PropertyConstraint
-
- getPropertyNames() - Method in class org.protempa.backend.BackendInstanceSpec
-
- getPropertyNames() - Method in class org.protempa.dest.table.PropositionColumnSpec
-
- getPropertyNames() - Method in class org.protempa.proposition.AbstractProposition
-
- getPropertyNames() - Method in interface org.protempa.proposition.Proposition
-
Get the property names for the proposition
- getPropertySpecs() - Method in class org.protempa.backend.BackendSpec
-
- getPropertyValueAbbrevDisplayName() - Method in class org.protempa.dest.table.ValueOutputConfig
-
- getPropertyValueAbbrevDisplayName() - Method in class org.protempa.dest.table.ValueOutputConfigBuilder
-
- getPropertyValueDisplayName() - Method in class org.protempa.dest.table.ValueOutputConfig
-
- getPropertyValueDisplayName() - Method in class org.protempa.dest.table.ValueOutputConfigBuilder
-
- getPropId() - Method in class org.protempa.PropertyDefinition
-
- getPropId() - Method in class org.protempa.PropertyDefinitionBuilder
-
- getProposition() - Method in class org.protempa.UniqueIdPair
-
- getPropositionDefinitions() - Method in class org.protempa.query.DefaultQueryBuilder
-
Returns an optional set of user-specified proposition definitions.
- getPropositionDefinitions() - Method in class org.protempa.query.Query
-
Returns an optional set of user-specified proposition definitions.
- getPropositionDefinitionsByTerm(And<TermSubsumption>) - Method in interface org.protempa.KnowledgeSource
-
Gets the mappings from term IDs to proposition IDs for each backend.
- getPropositionDefinitionsByTerm(And<TermSubsumption>) - Method in class org.protempa.KnowledgeSourceImpl
-
Gets the mappings from term IDs to proposition IDs for each backend.
- getPropositionId() - Method in class org.protempa.AbstractPropositionDefinition
-
- getPropositionId() - Method in class org.protempa.ExtendedPropositionDefinition
-
- getPropositionId() - Method in interface org.protempa.PropositionDefinition
-
The proposition id of propositions derived by this proposition
definition.
- getPropositionIds() - Method in class org.protempa.backend.dsb.filter.AbstractFilter
-
- getPropositionIds() - Method in interface org.protempa.backend.dsb.filter.Filter
-
Returns the proposition ids for which this filter is valid.
- getPropositionIds() - Method in class org.protempa.dest.table.Link
-
The ids of the propositions to traverse to.
- getPropositionIds() - Method in class org.protempa.proposition.Sequence
-
- getPropositionIds() - Method in class org.protempa.query.DefaultQueryBuilder
-
Returns the proposition ids to be queried.
- getPropositionIds() - Method in class org.protempa.query.Query
-
Returns the proposition ids to be queried.
- getPropositionIds() - Method in class org.protempa.ReferenceDefinition
-
Gets the allowed proposition ids for this reference.
- getPropositionIdsSpecified() - Method in interface org.protempa.dest.keyloader.Criteria
-
- getPropositions() - Method in class org.protempa.QueryResults.QueryResultsEntry
-
- getPropositionsByTerm(String) - Method in class org.protempa.backend.ksb.AbstractKnowledgeSourceBackend
-
A default implementation that returns an empty list.
- getPropositionsByTerm(String) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
Gets the proposition definitions for a given term.
- getPropositionsByTermSubsumption(And<TermSubsumption>) - Method in class org.protempa.backend.ksb.AbstractKnowledgeSourceBackend
-
A default implementation that returns an empty List.
- getPropositionsByTermSubsumption(And<TermSubsumption>) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
Gets the proposition definitions that are associated with the given AND
clause of term subsumptions.
- getProtempaSource() - Method in class org.protempa.AlgorithmSourceUpdatedEvent
-
- getProtempaSource() - Method in class org.protempa.DataSourceUpdatedEvent
-
- getProtempaSource() - Method in class org.protempa.KnowledgeSourceUpdatedEvent
-
- getProtempaSource() - Method in class org.protempa.SourceClosedUnexpectedlyEvent
-
Returns the
Source that closed unexpectedly.
- getProtempaSource() - Method in class org.protempa.SourceUpdatedEvent
-
Returns the source
Source (the same as what
getSource() returns).
- getProtempaSource() - Method in class org.protempa.TermSourceUpdatedEvent
-
- getQueryId() - Method in exception org.protempa.QueryException
-
- getQueryMode() - Method in class org.protempa.query.DefaultQueryBuilder
-
- getQueryMode() - Method in class org.protempa.query.Query
-
- getQueryResultsHandler(Query, DataSource, KnowledgeSource, List<? extends ProtempaEventListener>) - Method in class org.protempa.dest.deid.DeidentifiedDestination
-
- getQueryResultsHandler(Query, DataSource, KnowledgeSource, List<? extends ProtempaEventListener>) - Method in interface org.protempa.dest.Destination
-
Performs any initialization required for the query results handler's
configuration.
- getQueryResultsHandler(Query, DataSource, KnowledgeSource, List<? extends ProtempaEventListener>) - Method in class org.protempa.dest.keyloader.KeyLoaderDestination
-
- getQueryResultsHandler(Query, DataSource, KnowledgeSource, List<? extends ProtempaEventListener>) - Method in class org.protempa.dest.map.MapDestination
-
- getQueryResultsHandler(Query, DataSource, KnowledgeSource, List<? extends ProtempaEventListener>) - Method in class org.protempa.dest.proplist.PropositionListDestination
-
- getReference() - Method in class org.protempa.UniqueIdPair
-
- getReferenceDefinitions() - Method in class org.protempa.AbstractPropositionDefinition
-
- getReferenceDefinitions() - Method in interface org.protempa.PropositionDefinition
-
- getReferenceName() - Method in class org.protempa.UniqueIdPair
-
- getReferenceNames() - Method in class org.protempa.dest.table.Reference
-
Gets the names of the reference(s) to be traversed.
- getReferenceNames() - Method in class org.protempa.proposition.AbstractProposition
-
- getReferenceNames() - Method in interface org.protempa.proposition.Proposition
-
Get the reference names for the proposition
- getReferences(String) - Method in class org.protempa.proposition.AbstractProposition
-
- getReferences(String) - Method in interface org.protempa.proposition.Proposition
-
Gets the global unique identifiers for the propositions that have the
specified 1:N relationship with this proposition.
- getRelatedTemporalExtendedPropositionDefinition() - Method in class org.protempa.SequentialTemporalPatternDefinition.SubsequentTemporalExtendedPropositionDefinition
-
- getRelation() - Method in class org.protempa.dest.table.Derivation
-
- getRelation(TemporalExtendedPropositionDefinition, TemporalExtendedPropositionDefinition) - Method in class org.protempa.HighLevelAbstractionDefinition
-
Gets the relation between two temporal extended proposition definitions.
- getRelation(List<TemporalExtendedPropositionDefinition>) - Method in class org.protempa.HighLevelAbstractionDefinition
-
- getRelation() - Method in class org.protempa.SequentialTemporalPatternDefinition.SubsequentTemporalExtendedPropositionDefinition
-
- getReprFormat() - Method in class org.protempa.proposition.value.AbsoluteTimeGranularity
-
- getResultMap() - Method in class org.protempa.dest.map.MapQueryResultsHandler
-
Gets the map of query results that have been handled.
- getRMSError() - Method in class org.protempa.proposition.stats.RegressionLine
-
Returns the r.m.s.
- getSalt(String) - Method in interface org.protempa.dest.deid.MessageDigestDeidConfig
-
- getSelectedKeySetSpecs() - Method in class org.protempa.backend.dsb.AbstractDataSourceBackend
-
- getSelectedKeySetSpecs() - Method in interface org.protempa.backend.dsb.DataSourceBackend
-
- getSelectedKeySetSpecs() - Method in interface org.protempa.DataSource
-
- getSelectedKeySetSpecs() - Method in class org.protempa.DataSourceImpl
-
- getSemanticType() - Method in class org.protempa.Term
-
- getSequence() - Method in class org.protempa.proposition.Segment
-
- getShellCommand() - Method in class org.protempa.cli.CLI
-
Gets the shell command.
- getShortDateFormatNoYear() - Method in class org.protempa.proposition.value.AbsoluteTimeGranularity
-
- getShortDisplayName() - Method in class org.protempa.ExtendedPropositionDefinition
-
- getShortFormat() - Method in class org.protempa.proposition.value.AbsoluteTimeGranularity
-
- getShortFormat() - Method in class org.protempa.proposition.value.AbstractTimeUnit
-
- getShortFormat() - Method in interface org.protempa.proposition.value.Granularity
-
- getShortFormat() - Method in class org.protempa.proposition.value.RelativeDayGranularity
-
- getShortFormat() - Method in class org.protempa.proposition.value.RelativeHourGranularity
-
- getShortFormat() - Method in interface org.protempa.proposition.value.Unit
-
- getShowAbbrevDisplayName() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getShowDisplayName() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getShowFinish() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getShowId() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getShowLength() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getShowStartOrTimestamp() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getShowUniqueId() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getShowValue() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getSkip() - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
- getSkip() - Method in class org.protempa.LowLevelAbstractionDefinition
-
Return the value of the skip restart search directive.
- getSkipEnd() - Method in class org.protempa.LowLevelAbstractionDefinition
-
Return the value of the skip-end restart search directive.
- getSkipStart() - Method in class org.protempa.LowLevelAbstractionDefinition
-
Return the value of the skip-start restart search directive.
- getSlidingWindowWidthMode() - Method in class org.protempa.LowLevelAbstractionDefinition
-
Gets the sliding window width mode.
- getSourceId() - Method in class org.protempa.AbstractPropositionDefinition
-
- getSourceId() - Method in class org.protempa.proposition.UniqueId
-
- getSourceId() - Method in interface org.protempa.PropositionDefinition
-
- getSourceId() - Method in class org.protempa.valueset.ValueSet
-
Returns the source of this value set.
- getSourceIdBuilder() - Method in class org.protempa.valueset.ValueSetBuilder
-
- getSourceIdStr() - Method in class org.protempa.DefaultSourceIdBuilder
-
- getSourceSystem() - Method in class org.protempa.backend.dsb.AbstractDataSourceBackend
-
- getSourceSystem() - Method in interface org.protempa.backend.dsb.DataSourceBackend
-
- getSourceSystem() - Method in class org.protempa.KeySetSpec
-
- getSourceSystem() - Method in class org.protempa.proposition.AbstractProposition
-
- getSourceSystem() - Method in interface org.protempa.proposition.Proposition
-
Returns the data source type of the Proposition.
- getStart() - Method in class org.protempa.backend.dsb.filter.PositionFilter
-
Returns the start position supplied in the constructor.
- getStart() - Method in class org.protempa.graph.Edge
-
- getStartAbstractParamValue() - Method in class org.protempa.TemporalPatternOffset
-
- getStartFormattedLong() - Method in class org.protempa.proposition.TemporalProposition
-
Returns the earliest valid time of this proposition as a long string.
- getStartFormattedMedium() - Method in class org.protempa.proposition.TemporalProposition
-
Returns the earliest valid time of this proposition as a medium-length
string.
- getStartFormattedShort() - Method in class org.protempa.proposition.TemporalProposition
-
Returns the earliest valid time of this proposition as a short string.
- getStartGranularity() - Method in class org.protempa.backend.dsb.filter.PositionFilter
-
Returns the
Granularity with which to interpret the start
position.
- getStartGranularity() - Method in class org.protempa.proposition.interval.Interval
-
Gets the start granularity.
- getStartGranularity() - Method in class org.protempa.proposition.Segment
-
- getStartIntervalSide() - Method in class org.protempa.ContextOffset
-
- getStartIntervalSide() - Method in class org.protempa.TemporalPatternOffset
-
- getStartOffset() - Method in class org.protempa.ContextOffset
-
- getStartOffset() - Method in class org.protempa.TemporalPatternOffset
-
- getStartOffsetUnits() - Method in class org.protempa.ContextOffset
-
- getStartOffsetUnits() - Method in class org.protempa.TemporalPatternOffset
-
- getStartOrTimestampHeading() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getStartOrTimestampHeading() - Method in class org.protempa.dest.table.OutputConfig
-
- getStartSide() - Method in class org.protempa.backend.dsb.filter.PositionFilter
-
Returns the side of the proposition to which to apply the lower bound.
- getStartTemporalExtendedPropositionDefinition() - Method in class org.protempa.TemporalPatternOffset
-
- getStatistics() - Method in class org.protempa.dest.AbstractDestination
-
- getStatistics() - Method in class org.protempa.dest.deid.DeidentifiedDestination
-
- getStatistics() - Method in interface org.protempa.dest.Destination
-
Returns an instance that can be used to discover information about
previous runs of data.
- getString() - Method in class org.protempa.proposition.value.NominalValue
-
Gets the value as a Java
String.
- getStringRepresentation() - Method in class org.protempa.DataSourceBackendSourceSystem
-
- getStringRepresentation() - Method in class org.protempa.DefaultSourceId
-
- getStringRepresentation() - Method in class org.protempa.NotRecordedSourceId
-
- getStringRepresentation() - Method in class org.protempa.proposition.UniqueId
-
- getStringRepresentation() - Method in interface org.protempa.SourceId
-
- getStringRepresentation() - Method in class org.protempa.SourceSystem
-
- getSubContexts() - Method in class org.protempa.ContextDefinition
-
Returns the ids of other context definitions that, together with this
one, have a specific meaning when their intervals intersect.
- getSubsequentTemporalExtendedPropositionDefinitions() - Method in class org.protempa.SequentialTemporalPatternDefinition
-
- getSubsumption(String) - Method in class org.protempa.backend.tsb.AbstractTermSourceBackend
-
A default implementation that returns null
- getSubsumption(String) - Method in interface org.protempa.backend.tsb.TermSourceBackend
-
Retrieves all of the descendants of the term specified by the given ID.
- getSupportedPropositionIds(DataSource, KnowledgeSource) - Method in class org.protempa.dest.AbstractDestination
-
- getSupportedPropositionIds(DataSource, KnowledgeSource) - Method in class org.protempa.dest.deid.DeidentifiedDestination
-
- getSupportedPropositionIds(DataSource, KnowledgeSource) - Method in interface org.protempa.dest.Destination
-
Infers from the query results handler's specification what propositions
this query results handler supports in its output.
- getSupportedPropositionIds(DataSource, KnowledgeSource) - Method in class org.protempa.dest.keyloader.KeyLoaderDestination
-
- getSupportedPropositionIds(Destination) - Method in class org.protempa.Protempa
-
- GetSupportedPropositionIdsException - Exception in org.protempa.dest
-
- GetSupportedPropositionIdsException() - Constructor for exception org.protempa.dest.GetSupportedPropositionIdsException
-
- GetSupportedPropositionIdsException(String, Throwable) - Constructor for exception org.protempa.dest.GetSupportedPropositionIdsException
-
- GetSupportedPropositionIdsException(String) - Constructor for exception org.protempa.dest.GetSupportedPropositionIdsException
-
- GetSupportedPropositionIdsException(Throwable) - Constructor for exception org.protempa.dest.GetSupportedPropositionIdsException
-
- getSurvivalCurveData() - Method in class org.protempa.proposition.stats.AbstractKaplanMeyer
-
- getTemporalExtendedPropositionDefinitionPairs() - Method in class org.protempa.HighLevelAbstractionDefinition
-
Gets the temporal extended proposition definitions involved in relations
as pairs.
- getTemporalExtendedPropositionDefinitions() - Method in class org.protempa.SliceDefinition
-
- getTemporalOffset() - Method in class org.protempa.HighLevelAbstractionDefinition
-
- getTemporalOffset() - Method in class org.protempa.SequentialTemporalPatternDefinition
-
- getTemporalPropositions() - Method in class org.protempa.proposition.CompoundInterval
-
Gets the abstract parameters that belong to this interval
- getTermIds() - Method in class org.protempa.AbstractPropositionDefinition
-
- getTermIds() - Method in interface org.protempa.PropositionDefinition
-
Gets the ids of the TermDefinitions associated with this
proposition definition.
- getTermIds() - Method in class org.protempa.query.DefaultQueryBuilder
-
Gets the term ids to be queried in disjunctive normal form.
- getTermIds() - Method in class org.protempa.query.Query
-
Gets the term ids to be queried in disjunctive normal form.
- getTerminology() - Method in class org.protempa.Term
-
- getTerms() - Method in class org.protempa.TermSubsumption
-
- getTermSource() - Method in class org.protempa.Protempa
-
Gets the term source.
- getTermSourceBackendInstanceSpecs() - Method in class org.protempa.backend.ConfigurationsSupport
-
- getTermSourceBackendSections() - Method in class org.protempa.backend.Configuration
-
- getTermSourceBackendSpecLoader() - Method in interface org.protempa.backend.BackendProvider
-
- getTermSourceBackendSpecLoader() - Static method in class org.protempa.backend.BackendProviderManager
-
- getTermSourceBackendSpecLoader() - Method in class org.protempa.backend.test.MockBackendProvider
-
- getTermSubsumption(String) - Method in interface org.protempa.TermSource
-
Gets the term subsumption for the given term ID.
- getTermSubsumption(String) - Method in class org.protempa.TermSourceImpl
-
Gets the term subsumption for the given term ID.
- getTimeFormat() - Method in class org.protempa.proposition.value.AbsoluteTimeGranularity
-
- getTimestamp() - Method in class org.protempa.backend.dsb.DataValidationEvent
-
- getTimestamp() - Method in class org.protempa.ProtempaEvent
-
- getToIndex() - Method in class org.protempa.dest.table.Link
-
The last index of the propositions of interest at the end of the
traversal step exclusive, after applying the proposition id constraints,
property constraints and a comparator.
- getTrueOutput() - Method in class org.protempa.dest.table.AtLeastNColumnSpec
-
- getType() - Method in class org.protempa.backend.BackendPropertySpec
-
- getType() - Method in class org.protempa.backend.dsb.DataValidationEvent
-
- getType() - Method in class org.protempa.dest.table.PropositionValueColumnSpec
-
- getType() - Method in class org.protempa.proposition.value.BooleanValue
-
- getType() - Method in class org.protempa.proposition.value.DateValue
-
- getType() - Method in class org.protempa.proposition.value.InequalityNumberValue
-
- getType() - Method in class org.protempa.proposition.value.NominalValue
-
- getType() - Method in class org.protempa.proposition.value.NumberValue
-
- getType() - Method in class org.protempa.proposition.value.OrdinalValue
-
- getType() - Method in interface org.protempa.proposition.value.Value
-
Returns this object's type, guaranteed not null.
- getType() - Method in class org.protempa.proposition.value.ValueList
-
- getType() - Method in class org.protempa.ProtempaEvent
-
- getUniqueId() - Method in class org.protempa.datastore.UniqueIdUniqueIdStoreCreator.Reference
-
- getUniqueId() - Method in class org.protempa.proposition.AbstractProposition
-
- getUniqueId() - Method in interface org.protempa.proposition.Proposition
-
Gets this proposition's global unique identifier.
- getUniqueIdHeading() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getUniqueIdHeading() - Method in class org.protempa.dest.table.OutputConfig
-
- getUnitFactory() - Method in class org.protempa.backend.dsb.AbstractDataSourceBackend
-
- getUnitFactory() - Method in interface org.protempa.backend.dsb.DataSourceBackend
-
- getUnitFactory() - Method in interface org.protempa.DataSource
-
Returns the length units of returned data from this data source.
- getUnitFactory() - Method in class org.protempa.DataSourceImpl
-
Returns the length units of returned data from this data source.
- getUnits() - Method in class org.protempa.dest.table.DistanceBetweenColumnSpec
-
- getUnits() - Method in class org.protempa.PrimitiveParameterDefinition
-
Returns the units for values of this primitive parameter.
- getUnits() - Method in class org.protempa.proposition.value.AbsoluteTimeUnit
-
- getUpdated() - Method in class org.protempa.AbstractPropositionDefinition
-
- getUpdated() - Method in interface org.protempa.PropositionDefinition
-
Returns the timestamp of when this proposition definition was last
updated, if the knowledge source backend maintains this information.
- getUpdateDate() - Method in class org.protempa.proposition.AbstractProposition
-
- getUpdateDate() - Method in interface org.protempa.proposition.Proposition
-
Gets the timestamp when this proposition was last updated in the source
system, or for derived propositions, the timestamp it was last updated
through the temporal abstraction process.
- getUpperBound() - Method in class org.protempa.valueset.ValueSet
-
Gets the upper bound of this value set, if specified.
- getUpperBoundBuilder() - Method in class org.protempa.valueset.ValueSetBuilder
-
- getURI() - Method in class org.protempa.backend.dsb.DataValidationEvent
-
- getUsername() - Method in class org.protempa.query.DefaultQueryBuilder
-
- getUsername() - Method in class org.protempa.query.Query
-
- getVal() - Method in class org.protempa.proposition.value.InequalityNumberValueBuilder
-
- getVal() - Method in class org.protempa.proposition.value.NominalValueBuilder
-
- getVal() - Method in class org.protempa.proposition.value.NumberValueBuilder
-
- getValidationEvents() - Method in exception org.protempa.backend.DataSourceBackendFailedDataValidationException
-
- getValidationEvents() - Method in exception org.protempa.DataSourceFailedDataValidationException
-
- getValidator() - Method in class org.protempa.backend.BackendPropertySpec
-
- getValue() - Method in class org.protempa.Attribute
-
- getValue() - Method in class org.protempa.backend.dsb.filter.ValueFilter
-
- getValue() - Method in class org.protempa.dest.table.PropertyConstraint
-
Gets the value of the constraint.
- getValue() - Method in class org.protempa.ExtendedParameterDefinition
-
- getValue() - Method in class org.protempa.LowLevelAbstractionValueDefinition
-
- getValue() - Method in class org.protempa.PropertyConstraint
-
- getValue() - Method in interface org.protempa.proposition.Parameter
-
Gets the value of this parameter.
- getValue() - Method in class org.protempa.proposition.TemporalParameter
-
- getValue() - Method in class org.protempa.proposition.value.OrdinalValue
-
Returns the value.
- getValue() - Method in class org.protempa.proposition.value.OrdinalValueBuilder
-
- getValue() - Method in class org.protempa.TemporalExtendedParameterDefinition
-
- getValue() - Method in class org.protempa.ValueClassification
-
- getValue() - Method in class org.protempa.valueset.ValueSetElement
-
Returns the value.
- getValueBuilder() - Method in class org.protempa.AttributeBuilder
-
- getValueBuilder() - Method in class org.protempa.valueset.ValueSetElementBuilder
-
- getValueClassifications() - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
- getValueComp() - Method in class org.protempa.PropertyConstraint
-
- getValueComparator() - Method in class org.protempa.backend.dsb.filter.PropertyValueFilter
-
Gets the specified operator.
- getValueComparator() - Method in class org.protempa.dest.table.PropertyConstraint
-
Gets the comparator of the constraint.
- getValueDefinitionMatchOperator() - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
Gets the operator that is applied to each interval's low-level
abstraction values to determine the value to set for this abstraction.
- getValueDefinitions() - Method in class org.protempa.LowLevelAbstractionDefinition
-
- getValueDefinitions(String) - Method in class org.protempa.LowLevelAbstractionDefinition
-
- getValueFormatted() - Method in interface org.protempa.proposition.Parameter
-
Returns this parameter's value formatted as a string.
- getValueFormatted() - Method in class org.protempa.proposition.TemporalParameter
-
- getValueHeading() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- getValueHeading() - Method in class org.protempa.dest.table.OutputConfig
-
- getValueOutputConfig() - Method in class org.protempa.dest.table.PropositionColumnSpec
-
- getValues() - Method in class org.protempa.backend.dsb.filter.PropertyValueFilter
-
Gets the specified value.
- getValues() - Method in class org.protempa.proposition.CompoundValuedInterval
-
Gets the proposition ID-value map for this interval
- getValueSet(String) - Method in class org.protempa.KnowledgeSourceCache
-
- getValueSetElementBuilders() - Method in class org.protempa.valueset.ValueSetBuilder
-
- getValueSetElements() - Method in class org.protempa.valueset.ValueSet
-
Gets the elements of this value set, if specified.
- getValueSetId() - Method in class org.protempa.PropertyDefinition
-
Returns the property's value set (for nominal and ordinal values).
- getValueSetId() - Method in class org.protempa.PropertyDefinitionBuilder
-
- getValueType() - Method in class org.protempa.AlgorithmParameter
-
Returns the type of value of this parameter.
- getValueType() - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
- getValueType() - Method in class org.protempa.LowLevelAbstractionDefinition
-
- getValueType() - Method in interface org.protempa.ParameterDefinition
-
- getValueType() - Method in class org.protempa.PrimitiveParameterDefinition
-
Gets the value factory for this primitive parameter definition.
- getValueType() - Method in class org.protempa.PropertyDefinition
-
Returns the property's value type.
- getValueType() - Method in class org.protempa.PropertyDefinitionBuilder
-
- getVersion() - Method in class org.protempa.AbstractPropositionDefinition
-
- getVersion() - Method in interface org.protempa.PropositionDefinition
-
Returns the version number of this proposition definition, for
knowledge source backends that maintain version information.
- getVersion() - Method in class org.protempa.Terminology
-
- getView(List<T>, Long, Long) - Static method in class org.protempa.proposition.PropositionUtil
-
Filters a list of temporal propositions by time.
- getView(Map<String, List<T>>, Long, Long) - Static method in class org.protempa.proposition.PropositionUtil
-
- getVisited() - Method in class org.protempa.graph.Edge
-
- getWeight() - Method in class org.protempa.graph.Edge
-
- Granularity - Interface in org.protempa.proposition.value
-
The units for a proposition's temporal or spatial position, represented as
the distance from some origin.
- GranularityFactory - Interface in org.protempa.proposition.value
-
Access to the granularity of data provided by a data source.
- granularityStringToGranularity(String) - Static method in class org.protempa.proposition.value.AbsoluteTimeGranularity
-
- greaterThan(long) - Method in class org.protempa.graph.Weight
-
Checks to see if this weight is greater than the given long value.
- idHeading(String) - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- importTimestamp() - Method in class org.protempa.dest.table.RecordHandler
-
- includes(ValueComparator) - Method in enum org.protempa.proposition.value.ValueComparator
-
- incr() - Method in interface org.protempa.proposition.LocalUniqueIdValuesProvider
-
- indexOf(Object) - Method in class org.protempa.proposition.Segment
-
- indexOf(Object) - Method in class org.protempa.proposition.Sequence
-
- InequalityNumberValue - Class in org.protempa.proposition.value
-
Represents a test result that is outside of the reportable range of the test
and thus is reported prefixed with a greater than or less than sign.
- InequalityNumberValue(ValueComparator, double) - Constructor for class org.protempa.proposition.value.InequalityNumberValue
-
- InequalityNumberValue(ValueComparator, BigDecimal) - Constructor for class org.protempa.proposition.value.InequalityNumberValue
-
Creates a new InequalityNumberValue with the given
comparator and value.
- InequalityNumberValueBuilder - Class in org.protempa.proposition.value
-
- InequalityNumberValueBuilder() - Constructor for class org.protempa.proposition.value.InequalityNumberValueBuilder
-
- InequalityNumberValueBuilder(InequalityNumberValue) - Constructor for class org.protempa.proposition.value.InequalityNumberValueBuilder
-
- init(String) - Method in class org.protempa.backend.ConfigurationsSupport
-
- init(KnowledgeSource) - Method in interface org.protempa.dest.keyloader.Criteria
-
- init(Long, Granularity, Long, Granularity, Long, Unit) - Method in class org.protempa.proposition.interval.Interval
-
- init(Long, Long, Granularity, Long, Long, Granularity, Long, Long, Unit) - Method in class org.protempa.proposition.interval.Interval
-
- initComputed() - Method in class org.protempa.proposition.interval.Interval
-
- initialize(AlgorithmArguments) - Method in class org.protempa.AbstractAlgorithm
-
- initialize(AlgorithmArguments) - Method in interface org.protempa.Algorithm
-
- initialize(BackendInstanceSpec<?>) - Method in class org.protempa.backend.AbstractBackend
-
- initialize(BackendInstanceSpec<?>) - Method in class org.protempa.backend.AbstractCommonsAlgorithmSourceBackend
-
- initialize(BackendInstanceSpec) - Method in class org.protempa.backend.AbstractCommonsDataSourceBackend
-
- initialize(BackendInstanceSpec) - Method in class org.protempa.backend.AbstractCommonsKnowledgeSourceBackend
-
- initialize(BackendInstanceSpec) - Method in class org.protempa.backend.AbstractCommonsTermSourceBackend
-
- initialize(BackendInstanceSpec) - Method in class org.protempa.backend.asb.java.AbstractJavaAlgorithmBackend
-
Reads the properties file containing the list of algorithm classes.
- initialize(BackendInstanceSpec<?>) - Method in interface org.protempa.backend.Backend
-
- initialize(Object, BackendInstanceSpec) - Static method in class org.protempa.backend.CommonsBackend
-
Sets the fields corresponding to the properties in the configuration.
- initialize(BackendInstanceSpec) - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- initialize(BackendInstanceSpec<?>) - Method in class org.protempa.backend.test.MockTermSourceBackend
-
- initialize() - Method in class org.protempa.cli.CLI
-
Initializes PROTEMPA with the specified configuration.
- initializeAbstractProposition(String, UniqueId) - Method in class org.protempa.proposition.AbstractProposition
-
Assigns fields specified in the constructor.
- initializeExecuteAndClose() - Method in class org.protempa.cli.CLI
-
- initializeProperties() - Method in class org.protempa.proposition.AbstractProposition
-
- initializePropertyChangeSupport() - Method in class org.protempa.proposition.AbstractProposition
-
- initializeReferences() - Method in class org.protempa.proposition.AbstractProposition
-
- insert(E) - Method in class org.protempa.dest.table.RecordHandler
-
- internAll(String[]) - Static method in class org.protempa.ProtempaUtil
-
Replaces every element of the supplied string array with an interned
copy as created by
String.intern().
- Interval - Class in org.protempa.proposition.interval
-
A representation of an interval, designed according to the definition of an
interval in Combi et al.
- Interval.Side - Enum in org.protempa.proposition.interval
-
- INTERVAL_FACTORY - Static variable in class org.protempa.proposition.TemporalProposition
-
- intervalCreator() - Method in class org.protempa.proposition.Segment
-
- IntervalFactory - Class in org.protempa.proposition.interval
-
A factory for creating
Interval objects.
- IntervalFactory() - Constructor for class org.protempa.proposition.interval.IntervalFactory
-
- IntervalSectioner<E extends TemporalProposition,K extends CompoundInterval<E>> - Class in org.protempa.proposition
-
- IntervalUtil - Class in org.protempa.proposition.interval
-
- InvalidConfigurationException - Exception in org.protempa.backend
-
- InvalidConfigurationException(String) - Constructor for exception org.protempa.backend.InvalidConfigurationException
-
- InvalidConfigurationException(Throwable) - Constructor for exception org.protempa.backend.InvalidConfigurationException
-
- InvalidConfigurationException(String, Throwable) - Constructor for exception org.protempa.backend.InvalidConfigurationException
-
- InvalidConfigurationException() - Constructor for exception org.protempa.backend.InvalidConfigurationException
-
- InvalidPropertyNameException - Exception in org.protempa.backend
-
Thrown if a property name in a configuration is invalid.
- InvalidPropertyNameException(String) - Constructor for exception org.protempa.backend.InvalidPropertyNameException
-
- InvalidPropertyValueException - Exception in org.protempa.backend
-
Thrown if a property value in a configuration is invalid.
- InvalidPropertyValueException(String) - Constructor for exception org.protempa.backend.InvalidPropertyValueException
-
- InvalidPropertyValueException(String, Throwable) - Constructor for exception org.protempa.backend.InvalidPropertyValueException
-
- InvalidPropertyValueException(String, Object, Throwable) - Constructor for exception org.protempa.backend.InvalidPropertyValueException
-
- InvalidPropositionIdException - Exception in org.protempa
-
Thrown when a proposition id was not found in the knowledge source or in the
user-defined proposition definitions.
- inverse() - Method in class org.protempa.proposition.interval.Relation
-
- invertSign() - Method in class org.protempa.graph.Weight
-
Creates a new weight with the opposite sign.
- IS_HIPAA_IDENTIFIER - Static variable in class org.protempa.dest.deid.DeidAttributes
-
- isAllowed(Class<?>) - Static method in enum org.protempa.backend.BackendPropertyType
-
- isAllowPartialMatches() - Method in class org.protempa.SequentialTemporalPatternDefinition
-
Returns whether an interval will be generated if only the first, first
and second, etc.
- isBackendProviderClassLoaderSpecified() - Static method in class org.protempa.backend.BackendProviderManager
-
- isClosed() - Method in class org.protempa.AbstractSource
-
- isConcatenable() - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
- isConcatenable() - Method in class org.protempa.ConstantDefinition
-
By definition, constants are not concatenable.
- isConcatenable() - Method in class org.protempa.ContextDefinition
-
- isConcatenable() - Method in class org.protempa.EventDefinition
-
By definition, events are not concatenable.
- isConcatenable() - Method in class org.protempa.HighLevelAbstractionDefinition
-
Returns whether this type of high-level abstraction is concatenable.
- isConcatenable() - Method in class org.protempa.LowLevelAbstractionDefinition
-
Returns whether this type of low-level abstraction is concatenable.
- isConcatenable() - Method in class org.protempa.PrimitiveParameterDefinition
-
By definition, primitive parameters are not concatenable.
- isConcatenable() - Method in interface org.protempa.PropositionDefinition
-
Returns whether instances of this proposition definition are
concatenable.
- isConcatenable() - Method in class org.protempa.SequentialTemporalPatternDefinition
-
- isConcatenable() - Method in class org.protempa.SliceDefinition
-
By definition, slice abstractions are not concatenable.
- isConfigurationIdEnabled() - Method in class org.protempa.cli.CLI
-
Whether the configuration option will be created.
- isConfigurationsProviderClassLoaderSpecified() - Static method in class org.protempa.backend.ConfigurationsProviderManager
-
- isCountUnique() - Method in class org.protempa.dest.table.CountColumnSpec
-
- isDerived() - Method in class org.protempa.DataSourceBackendSourceSystem
-
- isDerived() - Method in class org.protempa.SourceSystem
-
- isEmpty() - Method in class org.protempa.DataSourceResultMap
-
- isEmpty() - Method in class org.protempa.graph.DirectedGraph
-
Check to see if there are any vertices defined.
- isEmpty() - Method in class org.protempa.proposition.Sequence
-
- isEqual(long) - Method in class org.protempa.graph.Weight
-
Checks if this weight has the same value as the given long.
- isEqual(Object) - Method in class org.protempa.proposition.AbstractParameter
-
- isEqual(Object) - Method in class org.protempa.proposition.AbstractProposition
-
- isEqual(Object) - Method in class org.protempa.proposition.Constant
-
- isEqual(Object) - Method in class org.protempa.proposition.Event
-
- isEqual(Object) - Method in class org.protempa.proposition.PrimitiveParameter
-
- isEqual(Object) - Method in interface org.protempa.proposition.Proposition
-
Determines if the specified object is a
Proposition and has
the same field values as this proposition.
- isEqual(Object) - Method in class org.protempa.proposition.TemporalParameter
-
- isEqual(Object) - Method in class org.protempa.proposition.TemporalProposition
-
- isFatal() - Method in class org.protempa.backend.dsb.DataValidationEvent
-
- isGetStatisticsSupported() - Method in class org.protempa.dest.AbstractDestination
-
- isGetStatisticsSupported() - Method in class org.protempa.dest.deid.DeidentifiedDestination
-
- isGetStatisticsSupported() - Method in interface org.protempa.dest.Destination
-
- isInfinity() - Method in class org.protempa.graph.Weight
-
Checks if this weight has value of positive or negative infinity.
- isInherited() - Method in class org.protempa.PropertyDefinition
-
- isInstance(Object) - Method in enum org.protempa.backend.BackendPropertyType
-
- isInstance(Value) - Method in enum org.protempa.proposition.value.ValueType
-
Returns whether a value is an instance of this value type.
- isInValueSet(Value) - Method in class org.protempa.valueset.ValueSet
-
Returns whether the specified value is in the value set.
- isLengthGreaterThan(int, Unit) - Method in class org.protempa.proposition.interval.Interval
-
- isLengthLessThan(int, Unit) - Method in class org.protempa.proposition.interval.Interval
-
- isMatch(Proposition) - Method in class org.protempa.dest.table.Link
-
Returns whether a proposition has one of the proposition ids specified
by the link.
- isMergedInterval() - Method in class org.protempa.SliceDefinition
-
- isNegativeInfinity() - Method in class org.protempa.graph.Weight
-
Checks if this weight has value of negative infinity.
- isOrdered() - Method in class org.protempa.valueset.ValueSet
-
- isOrdered() - Method in class org.protempa.valueset.ValueSetBuilder
-
- isPositiveInfinity() - Method in class org.protempa.graph.Weight
-
Checks if this weight has value of positive infinity.
- isRequired(String) - Method in class org.protempa.backend.BackendInstanceSpec
-
- isRequired() - Method in class org.protempa.backend.BackendPropertySpec
-
- isRequired() - Method in class org.protempa.cli.CLI.Argument
-
Returns whether the argument is required.
- isSatisfiedBy(Proposition) - Method in class org.protempa.PropertyConstraint
-
Returns whether a proposition satisfies this constraint.
- isShowPropertyValueAbbrevDisplayName() - Method in class org.protempa.dest.table.ValueOutputConfig
-
- isShowPropertyValueAbbrevDisplayName() - Method in class org.protempa.dest.table.ValueOutputConfigBuilder
-
- isShowPropertyValueDisplayName() - Method in class org.protempa.dest.table.ValueOutputConfig
-
- isShowPropertyValueDisplayName() - Method in class org.protempa.dest.table.ValueOutputConfigBuilder
-
- isSolid() - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
- isSolid() - Method in class org.protempa.ConstantDefinition
-
By definition, there can be multiple constants with the same id.
- isSolid() - Method in class org.protempa.ContextDefinition
-
- isSolid() - Method in class org.protempa.EventDefinition
-
Returns whether intervals of this type are solid, i.e., never hold over
properly overlapping intervals.
- isSolid() - Method in class org.protempa.HighLevelAbstractionDefinition
-
Returns whether intervals of this type are solid, i.e., never hold over
properly overlapping intervals.
- isSolid() - Method in class org.protempa.LowLevelAbstractionDefinition
-
Returns whether intervals of this type are solid, i.e., never hold over
properly overlapping intervals.
- isSolid() - Method in class org.protempa.PrimitiveParameterDefinition
-
By definition, primitive parameters are solid.
- isSolid() - Method in interface org.protempa.PropositionDefinition
-
Returns whether intervals of this type are solid, i.e., never hold over
properly overlapping intervals.
- isSolid() - Method in class org.protempa.SequentialTemporalPatternDefinition
-
Returns whether intervals of this type are solid, i.e., never hold over
properly overlapping intervals.
- isSolid() - Method in class org.protempa.SliceDefinition
-
Returns whether intervals of this type are solid, i.e., never hold over
properly overlapping intervals.
- isValid() - Method in class org.protempa.proposition.interval.DefaultInterval
-
- isValidatePropositionIds() - Static method in class org.protempa.query.DefaultQueryBuilder
-
- isValue() - Method in class org.protempa.proposition.value.BooleanValueBuilder
-
- iterator() - Method in class org.protempa.backend.BackendSpecLoader
-
- iterator() - Method in class org.protempa.graph.DirectedGraph
-
Create an iterator of vertices.
- iterator() - Method in class org.protempa.proposition.Sequence
-
- iterator() - Method in class org.protempa.QueryResults
-
- parameter(String) - Method in class org.protempa.AbstractAlgorithm
-
- parameter(String) - Method in interface org.protempa.Algorithm
-
Returns the named parameter.
- Parameter - Interface in org.protempa.proposition
-
Represents a single element of patient data or information, such as a
time-stamped raw data value or an inferred interval.
- ParameterDefinition - Interface in org.protempa
-
- parse(String, String) - Method in enum org.protempa.backend.BackendPropertyType
-
- parse(String) - Static method in class org.protempa.proposition.value.BooleanValue
-
Parses a boolean from a string.
- parse(String) - Static method in class org.protempa.proposition.value.DateValue
-
Parses a date from a string.
- parse(String) - Static method in class org.protempa.proposition.value.InequalityNumberValue
-
Parses a number with an inequality from a string, e.g., "> 100".
- parse(String) - Static method in class org.protempa.proposition.value.NumberValue
-
Parses a number from a string.
- parse(String) - Static method in enum org.protempa.proposition.value.ValueComparator
-
Gets the comparison object corresponding to the given mathematical
comparison symbol.
- parse(String) - Method in enum org.protempa.proposition.value.ValueType
-
Creates a
Value instance by parsing the given string.
- parseGranularityFactory(String) - Method in class org.protempa.backend.AbstractCommonsDataSourceBackend
-
- parseProperty(String, String) - Method in class org.protempa.backend.BackendInstanceSpec
-
- parseProperty(BackendInstanceSpec, BackendPropertySpec, String) - Method in enum org.protempa.backend.BackendPropertyType
-
- parseUnitFactory(String) - Method in class org.protempa.backend.AbstractCommonsDataSourceBackend
-
- POS_EPSILON - Static variable in class org.protempa.graph.WeightFactory
-
Special value representing the smallest possible positive value.
- POS_INFINITY - Static variable in class org.protempa.graph.WeightFactory
-
Special value representing positive infinity.
- PositionFilter - Class in org.protempa.backend.dsb.filter
-
A filter for a position (e.g., date/time) range.
- PositionFilter(String[], Long, Granularity, Long, Granularity) - Constructor for class org.protempa.backend.dsb.filter.PositionFilter
-
Creates a filter with a position range.
- PositionFilter(String[], Long, Granularity, Long, Granularity, Interval.Side, Interval.Side) - Constructor for class org.protempa.backend.dsb.filter.PositionFilter
-
Initializes a filter with a position range.
- PrimitiveParameter - Class in org.protempa.proposition
-
A raw data parameter with a timestamp (or other position value).
- PrimitiveParameter(String, UniqueId) - Constructor for class org.protempa.proposition.PrimitiveParameter
-
Creates a parameter with an identification string.
- PrimitiveParameterDefinition - Class in org.protempa
-
Defines measurable or observable time-stamped data types.
- PrimitiveParameterDefinition(String) - Constructor for class org.protempa.PrimitiveParameterDefinition
-
- PrintAbstractedFrom - Class in org.protempa.cli
-
- PrintAbstractedFrom() - Constructor for class org.protempa.cli.PrintAbstractedFrom
-
- PrintAbstractedInto - Class in org.protempa.cli
-
- PrintAbstractedInto() - Constructor for class org.protempa.cli.PrintAbstractedInto
-
- printException(Exception) - Method in class org.protempa.cli.CLI
-
Prints to the console an exception's message and its nested exception's
message (if any).
- PrintInverseIsA - Class in org.protempa.cli
-
- PrintInverseIsA() - Constructor for class org.protempa.cli.PrintInverseIsA
-
- PrintIsA - Class in org.protempa.cli
-
- PrintIsA() - Constructor for class org.protempa.cli.PrintIsA
-
- PrintPropositionDefinition - Class in org.protempa.cli
-
Prints a specified proposition definition to the console.
- PrintPropositionDefinition() - Constructor for class org.protempa.cli.PrintPropositionDefinition
-
- PrintPropositionDefinitionsForTerm - Class in org.protempa.cli
-
Prints the ids of the proposition definitions that are associated with
a given term.
- PrintPropositionDefinitionsForTerm() - Constructor for class org.protempa.cli.PrintPropositionDefinitionsForTerm
-
- PrintSubtreeInDataSource - Class in org.protempa.cli
-
- PrintSubtreeInDataSource() - Constructor for class org.protempa.cli.PrintSubtreeInDataSource
-
- PrintTerm - Class in org.protempa.cli
-
Prints a specified term to the console.
- PrintTerm() - Constructor for class org.protempa.cli.PrintTerm
-
- PrintTermChildren - Class in org.protempa.cli
-
Prints a term's children.
- PrintTermChildren() - Constructor for class org.protempa.cli.PrintTermChildren
-
- processOptionsAndArgs(String[]) - Method in class org.protempa.cli.CLI
-
Processes command line options.
- PROPERTIES_BASE_NAME_NULL - Static variable in annotation type org.protempa.backend.annotations.BackendInfo
-
- PropertyConstraint - Class in org.protempa.dest.table
-
Specifies a constraint on the value of a proposition property.
- PropertyConstraint(String, ValueComparator, Value) - Constructor for class org.protempa.dest.table.PropertyConstraint
-
Constructs a property constraint with a property name, comparator and
one or more values.
- PropertyConstraint - Class in org.protempa
-
- PropertyConstraint() - Constructor for class org.protempa.PropertyConstraint
-
- propertyDefinition(String) - Method in class org.protempa.AbstractPropositionDefinition
-
- PropertyDefinition - Class in org.protempa
-
Defines a property of a proposition definition.
- PropertyDefinition(String, String, String, ValueType, String, String) - Constructor for class org.protempa.PropertyDefinition
-
- PropertyDefinition(String, String, String, ValueType, String, String, Attribute[]) - Constructor for class org.protempa.PropertyDefinition
-
Initializes the property definition with a displayName, a value type and a
value set.
- propertyDefinition(String) - Method in interface org.protempa.PropositionDefinition
-
- PropertyDefinitionBuilder - Class in org.protempa
-
- PropertyDefinitionBuilder() - Constructor for class org.protempa.PropertyDefinitionBuilder
-
- PropertyDefinitionBuilder(PropertyDefinition) - Constructor for class org.protempa.PropertyDefinitionBuilder
-
- propertyHeadings(HashMap<String, String>) - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- PropertyValueFilter - Class in org.protempa.backend.dsb.filter
-
For specifying constraints on the value of a property of a proposition.
- PropertyValueFilter(String[], String, ValueComparator, Value...) - Constructor for class org.protempa.backend.dsb.filter.PropertyValueFilter
-
Instantiate with the proposition ids to which this filter applies,
the property to which this filter applies, the operator and a value.
- Proposition - Interface in org.protempa.proposition
-
A data record.
- PropositionCheckedVisitable - Interface in org.protempa.proposition.visitor
-
Interface for accepting a proposition visitor that might throw a checked
exception.
- PropositionCheckedVisitor - Interface in org.protempa.proposition.visitor
-
Interface for classes that do processing on propositions.
- PropositionColumnSpec - Class in org.protempa.dest.table
-
- PropositionColumnSpec() - Constructor for class org.protempa.dest.table.PropositionColumnSpec
-
- PropositionColumnSpec(String[]) - Constructor for class org.protempa.dest.table.PropositionColumnSpec
-
- PropositionColumnSpec(String, String[]) - Constructor for class org.protempa.dest.table.PropositionColumnSpec
-
- PropositionColumnSpec(String[], OutputConfig, ValueOutputConfig) - Constructor for class org.protempa.dest.table.PropositionColumnSpec
-
- PropositionColumnSpec(String[], OutputConfig, ValueOutputConfig, Link[]) - Constructor for class org.protempa.dest.table.PropositionColumnSpec
-
- PropositionColumnSpec(String[], OutputConfig, ValueOutputConfig, Link[], int) - Constructor for class org.protempa.dest.table.PropositionColumnSpec
-
- PropositionColumnSpec(String, String[], OutputConfig, ValueOutputConfig, Link[], int) - Constructor for class org.protempa.dest.table.PropositionColumnSpec
-
- PropositionDefinition - Interface in org.protempa
-
Foundation type for all objects that go in a Knowledge Base.
- PropositionDefinitionCheckedVisitable - Interface in org.protempa
-
Interface for accepting a proposition definition visitor.
- PropositionDefinitionCheckedVisitor - Interface in org.protempa
-
Interface for classes that do processing on abstraction definitions and may
throw an exception.
- PropositionDefinitionDisplayNameComparator() - Constructor for class org.protempa.ProtempaUtil.PropositionDefinitionDisplayNameComparator
-
Instantiates this comparator with the default display name style
(Style.REGULAR.
- PropositionDefinitionDisplayNameComparator(ProtempaUtil.PropositionDefinitionDisplayNameComparator.Style) - Constructor for class org.protempa.ProtempaUtil.PropositionDefinitionDisplayNameComparator
-
Instantiates this comparator to use the short or long display
names when doing comparisons.
- PropositionDefinitionVisitable - Interface in org.protempa
-
Interface for accepting a proposition definition visitor.
- PropositionDefinitionVisitor - Interface in org.protempa
-
Interface for classes that do processing on abstraction definitions.
- PropositionListDestination - Class in org.protempa.dest.proplist
-
Destination containing one row per proposition, with delimited columns
containing attributes of each proposition.
- PropositionListQueryResultsHandler - Class in org.protempa.dest.proplist
-
An implementation of QueryResultsHandler providing functionality for writing
the results to an output stream in a tab-delimited format.
- PropositionListQueryResultsHandler(BufferedWriter) - Constructor for class org.protempa.dest.proplist.PropositionListQueryResultsHandler
-
Instantiates this handler to write to a
Writer.
- PropositionListQueryResultsHandler(BufferedWriter, boolean) - Constructor for class org.protempa.dest.proplist.PropositionListQueryResultsHandler
-
- PropositionListQueryResultsHandler(BufferedWriter, List<? extends Comparator<Proposition>>) - Constructor for class org.protempa.dest.proplist.PropositionListQueryResultsHandler
-
Instantiates this handler to write to a
Writer with optional
sorting of propositions.
- PropositionListQueryResultsHandler(BufferedWriter, List<? extends Comparator<Proposition>>, boolean) - Constructor for class org.protempa.dest.proplist.PropositionListQueryResultsHandler
-
- PropositionStoreCreator<P extends Proposition> - Class in org.protempa.datastore
-
A permanent store mapping key IDs to lists of propositions.
- PropositionStoreCreator() - Constructor for class org.protempa.datastore.PropositionStoreCreator
-
- PropositionStoreCreator(String) - Constructor for class org.protempa.datastore.PropositionStoreCreator
-
- PropositionUtil - Class in org.protempa.proposition
-
- PropositionValueColumnSpec - Class in org.protempa.dest.table
-
Creates a column with an aggregation of primitive parameters with numerical
values.
- PropositionValueColumnSpec(Link[], PropositionValueColumnSpec.Type) - Constructor for class org.protempa.dest.table.PropositionValueColumnSpec
-
- PropositionValueColumnSpec(String, Link[], PropositionValueColumnSpec.Type) - Constructor for class org.protempa.dest.table.PropositionValueColumnSpec
-
- PropositionValueColumnSpec.Type - Enum in org.protempa.dest.table
-
- PropositionVisitable - Interface in org.protempa.proposition.visitor
-
Interface for accepting a proposition visitor.
- PropositionVisitor - Interface in org.protempa.proposition.visitor
-
Interface for classes that do processing on propositions.
- Protempa - Class in org.protempa
-
Main PROTEMPA API.
- Protempa(DataSource, KnowledgeSource, AlgorithmSource, TermSource) - Constructor for class org.protempa.Protempa
-
Constructor that configures PROTEMPA not to cache found abstract
parameters.
- Protempa(DataSource, KnowledgeSource, AlgorithmSource, TermSource, boolean) - Constructor for class org.protempa.Protempa
-
Constructor that lets the user specify whether or not to cache found
abstract parameters.
- ProtempaAlreadyClosedException - Exception in org.protempa
-
A cause of FinderExceptions when a query is attempted while Protempa
is closed.
- ProtempaAlreadyClosedException() - Constructor for exception org.protempa.ProtempaAlreadyClosedException
-
- ProtempaEvent - Class in org.protempa
-
- ProtempaEvent(ProtempaEvent.Level, ProtempaEvent.Type, Class<?>, Date, String) - Constructor for class org.protempa.ProtempaEvent
-
- ProtempaEvent.Level - Enum in org.protempa
-
- ProtempaEvent.Type - Enum in org.protempa
-
- ProtempaEventListener - Interface in org.protempa
-
- ProtempaException - Exception in org.protempa
-
Base class for PROTEMPA checked exceptions.
- ProtempaException() - Constructor for exception org.protempa.ProtempaException
-
- ProtempaException(String, Throwable) - Constructor for exception org.protempa.ProtempaException
-
- ProtempaException(String) - Constructor for exception org.protempa.ProtempaException
-
- ProtempaException(Throwable) - Constructor for exception org.protempa.ProtempaException
-
- ProtempaStartupException - Exception in org.protempa
-
Exception for errors that occur when PROTEMPA is being initialized.
- ProtempaUtil - Class in org.protempa
-
Utility methods for the PROTEMPA project.
- ProtempaUtil.PropositionDefinitionDisplayNameComparator - Class in org.protempa
-
Comparator for comparing proposition definitions by display name.
- ProtempaUtil.PropositionDefinitionDisplayNameComparator.Style - Enum in org.protempa
-
For specifying which display name style to use.
- ProviderBasedLocalUniqueId - Class in org.protempa.proposition
-
- ProviderBasedLocalUniqueId(LocalUniqueIdValuesProvider) - Constructor for class org.protempa.proposition.ProviderBasedLocalUniqueId
-
- ProviderBasedUniqueIdFactory - Class in org.protempa.proposition
-
- ProviderBasedUniqueIdFactory(LocalUniqueIdValuesProvider) - Constructor for class org.protempa.proposition.ProviderBasedUniqueIdFactory
-
- put(String, List<P>) - Method in class org.protempa.DataSourceResultMap
-
- putAll(Map<? extends String, ? extends List<P>>) - Method in class org.protempa.DataSourceResultMap
-
- putPropertyHeading(String, String) - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- readAbstractedFrom(AbstractionDefinition) - Method in interface org.protempa.KnowledgeSource
-
- readAbstractedFrom(String) - Method in interface org.protempa.KnowledgeSource
-
- readAbstractedFrom(AbstractionDefinition) - Method in class org.protempa.KnowledgeSourceImpl
-
- readAbstractedFrom(String) - Method in class org.protempa.KnowledgeSourceImpl
-
- readAbstractedInto(String) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
- readAbstractedInto(String) - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- readAbstractedInto(PropositionDefinition) - Method in interface org.protempa.KnowledgeSource
-
- readAbstractedInto(String) - Method in interface org.protempa.KnowledgeSource
-
- readAbstractedInto(PropositionDefinition) - Method in class org.protempa.KnowledgeSourceImpl
-
- readAbstractedInto(String) - Method in class org.protempa.KnowledgeSourceImpl
-
- readAbstractedIntoPropIds(PropositionDefinition) - Method in interface org.protempa.KnowledgeSource
-
- readAbstractedIntoPropIds(String) - Method in interface org.protempa.KnowledgeSource
-
- readAbstractedIntoPropIds(PropositionDefinition) - Method in class org.protempa.KnowledgeSourceImpl
-
- readAbstractedIntoPropIds(String) - Method in class org.protempa.KnowledgeSourceImpl
-
- readAbstractionDefinition(String) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
- readAbstractionDefinition(String) - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- readAbstractionDefinition(String) - Method in interface org.protempa.KnowledgeSource
-
- readAbstractionDefinition(String) - Method in class org.protempa.KnowledgeSourceImpl
-
- readAbstractionDefinitions(String[]) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
- readAbstractionDefinitions(String[]) - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- readAbstractionDefinitions(String...) - Method in interface org.protempa.KnowledgeSource
-
- readAbstractionDefinitions(String...) - Method in class org.protempa.KnowledgeSourceImpl
-
- readAbstractProposition(ObjectInputStream) - Method in class org.protempa.proposition.AbstractProposition
-
- readAlgorithm(String) - Method in interface org.protempa.AlgorithmSource
-
Read an algorithm with the given id.
- readAlgorithm(String) - Method in class org.protempa.AlgorithmSourceImpl
-
Read an algorithm with the given id.
- readAlgorithm(String, Algorithms) - Method in interface org.protempa.backend.asb.AlgorithmSourceBackend
-
Reads an algorithm from this backend.
- readAlgorithm(String, Algorithms) - Method in class org.protempa.backend.asb.java.AbstractJavaAlgorithmBackend
-
- readAlgorithms() - Method in interface org.protempa.AlgorithmSource
-
Reads all algorithms in this algorithm source.
- readAlgorithms() - Method in class org.protempa.AlgorithmSourceImpl
-
Reads all algorithms in this algorithm source.
- readAlgorithms(Algorithms) - Method in interface org.protempa.backend.asb.AlgorithmSourceBackend
-
Read the available algorithms.
- readAlgorithms(Algorithms) - Method in class org.protempa.backend.asb.java.AbstractJavaAlgorithmBackend
-
- readContextDefinition(String) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
- readContextDefinition(String) - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- readContextDefinition(String) - Method in interface org.protempa.KnowledgeSource
-
- readContextDefinition(String) - Method in class org.protempa.KnowledgeSourceImpl
-
- readContextDefinitions(String[]) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
- readContextDefinitions(String[]) - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- readContextDefinitions(String...) - Method in interface org.protempa.KnowledgeSource
-
- readContextDefinitions(String...) - Method in class org.protempa.KnowledgeSourceImpl
-
- readInducedBy(String) - Method in interface org.protempa.KnowledgeSource
-
- readInducedBy(ContextDefinition) - Method in interface org.protempa.KnowledgeSource
-
- readInducedBy(String) - Method in class org.protempa.KnowledgeSourceImpl
-
- readInducedBy(ContextDefinition) - Method in class org.protempa.KnowledgeSourceImpl
-
- readInduces(String) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
- readInduces(String) - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- readInduces(String) - Method in interface org.protempa.KnowledgeSource
-
- readInduces(TemporalPropositionDefinition) - Method in interface org.protempa.KnowledgeSource
-
- readInduces(TemporalPropositionDefinition) - Method in class org.protempa.KnowledgeSourceImpl
-
- readInduces(String) - Method in class org.protempa.KnowledgeSourceImpl
-
- readInducesPropIds(String) - Method in interface org.protempa.KnowledgeSource
-
- readInducesPropIds(TemporalPropositionDefinition) - Method in interface org.protempa.KnowledgeSource
-
- readInducesPropIds(TemporalPropositionDefinition) - Method in class org.protempa.KnowledgeSourceImpl
-
- readInducesPropIds(String) - Method in class org.protempa.KnowledgeSourceImpl
-
- readInverseIsA(PropositionDefinition) - Method in interface org.protempa.KnowledgeSource
-
- readInverseIsA(String) - Method in interface org.protempa.KnowledgeSource
-
- readInverseIsA(PropositionDefinition) - Method in class org.protempa.KnowledgeSourceImpl
-
- readInverseIsA(String) - Method in class org.protempa.KnowledgeSourceImpl
-
- readIsA(String) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
- readIsA(String) - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- readIsA(PropositionDefinition) - Method in interface org.protempa.KnowledgeSource
-
- readIsA(String) - Method in interface org.protempa.KnowledgeSource
-
- readIsA(PropositionDefinition) - Method in class org.protempa.KnowledgeSourceImpl
-
- readIsA(String) - Method in class org.protempa.KnowledgeSourceImpl
-
- readIsAPropIds(PropositionDefinition) - Method in interface org.protempa.KnowledgeSource
-
- readIsAPropIds(String) - Method in interface org.protempa.KnowledgeSource
-
- readIsAPropIds(PropositionDefinition) - Method in class org.protempa.KnowledgeSourceImpl
-
- readIsAPropIds(String) - Method in class org.protempa.KnowledgeSourceImpl
-
- readParentPropIds(PropositionDefinition) - Method in interface org.protempa.KnowledgeSource
-
- readParentPropIds(String) - Method in interface org.protempa.KnowledgeSource
-
- readParentPropIds(PropositionDefinition) - Method in class org.protempa.KnowledgeSourceImpl
-
- readParentPropIds(String) - Method in class org.protempa.KnowledgeSourceImpl
-
- readParents(PropositionDefinition) - Method in interface org.protempa.KnowledgeSource
-
- readParents(String) - Method in interface org.protempa.KnowledgeSource
-
- readParents(PropositionDefinition) - Method in class org.protempa.KnowledgeSourceImpl
-
- readParents(String) - Method in class org.protempa.KnowledgeSourceImpl
-
- readPropositionDefinition(String) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
Reads a proposition definition into the given PROTEMPA knowledge base.
- readPropositionDefinition(String) - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- readPropositionDefinition(String) - Method in interface org.protempa.KnowledgeSource
-
Returns the specified proposition definition.
- readPropositionDefinition(String) - Method in class org.protempa.KnowledgeSourceImpl
-
Returns the specified proposition definition.
- readPropositionDefinitions(String[]) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
- readPropositionDefinitions(String[]) - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- readPropositionDefinitions(String...) - Method in interface org.protempa.KnowledgeSource
-
- readPropositionDefinitions(String...) - Method in class org.protempa.KnowledgeSourceImpl
-
- readPropositions(Set<String>, Set<String>, Filter, QueryResultsHandler) - Method in interface org.protempa.backend.dsb.DataSourceBackend
-
- readPropositions(Set<String>, Set<String>, Filter, QueryResultsHandler) - Method in interface org.protempa.DataSource
-
- readPropositions(Set<String>, Set<String>, Filter, QueryResultsHandler) - Method in class org.protempa.DataSourceImpl
-
- readSubContextOfPropIds(String) - Method in interface org.protempa.KnowledgeSource
-
- readSubContextOfPropIds(ContextDefinition) - Method in interface org.protempa.KnowledgeSource
-
- readSubContextOfPropIds(String) - Method in class org.protempa.KnowledgeSourceImpl
-
- readSubContextOfPropIds(ContextDefinition) - Method in class org.protempa.KnowledgeSourceImpl
-
- readSubContextOfs(String) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
- readSubContextOfs(String) - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- readSubContextOfs(String) - Method in interface org.protempa.KnowledgeSource
-
- readSubContextOfs(ContextDefinition) - Method in interface org.protempa.KnowledgeSource
-
- readSubContextOfs(String) - Method in class org.protempa.KnowledgeSourceImpl
-
- readSubContextOfs(ContextDefinition) - Method in class org.protempa.KnowledgeSourceImpl
-
- readSubContexts(String) - Method in interface org.protempa.KnowledgeSource
-
- readSubContexts(ContextDefinition) - Method in interface org.protempa.KnowledgeSource
-
- readSubContexts(String) - Method in class org.protempa.KnowledgeSourceImpl
-
- readSubContexts(ContextDefinition) - Method in class org.protempa.KnowledgeSourceImpl
-
- readTemporalParameter(ObjectInputStream) - Method in class org.protempa.proposition.TemporalParameter
-
- readTemporalProposition(ObjectInputStream) - Method in class org.protempa.proposition.TemporalProposition
-
Called while deserializing a temporal proposition.
- readTemporalPropositionDefinition(String) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
- readTemporalPropositionDefinition(String) - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- readTemporalPropositionDefinition(String) - Method in interface org.protempa.KnowledgeSource
-
- readTemporalPropositionDefinition(String) - Method in class org.protempa.KnowledgeSourceImpl
-
- readTemporalPropositionDefinitions(String[]) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
- readTemporalPropositionDefinitions(String[]) - Method in class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- readTemporalPropositionDefinitions(String...) - Method in interface org.protempa.KnowledgeSource
-
- readTemporalPropositionDefinitions(String...) - Method in class org.protempa.KnowledgeSourceImpl
-
- readTerm(String) - Method in class org.protempa.backend.tsb.AbstractTermSourceBackend
-
A default implementation that returns null
- readTerm(String) - Method in interface org.protempa.backend.tsb.TermSourceBackend
-
Reads a term from the given terminology
- readTerm(String) - Method in interface org.protempa.TermSource
-
- readTerm(String) - Method in class org.protempa.TermSourceImpl
-
- readTerms(String[]) - Method in class org.protempa.backend.tsb.AbstractTermSourceBackend
-
A default implementation that returns null
- readTerms(String[]) - Method in interface org.protempa.backend.tsb.TermSourceBackend
-
Reads an array of terms from the given terminology
- readValueSet(String) - Method in class org.protempa.backend.ksb.AbstractKnowledgeSourceBackend
-
A default implementation that returns null.
- readValueSet(String) - Method in interface org.protempa.backend.ksb.KnowledgeSourceBackend
-
Reads the value set from the knowledge base and returns it.
- readValueSet(String) - Method in interface org.protempa.KnowledgeSource
-
- readValueSet(String) - Method in class org.protempa.KnowledgeSourceImpl
-
- recalculateChildren() - Method in class org.protempa.AbstractPropositionDefinition
-
- recalculateChildren() - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
- recalculateChildren() - Method in class org.protempa.ConstantDefinition
-
- recalculateChildren() - Method in class org.protempa.ContextDefinition
-
- recalculateChildren() - Method in class org.protempa.EventDefinition
-
- recalculateChildren() - Method in class org.protempa.HighLevelAbstractionDefinition
-
- recalculateChildren() - Method in class org.protempa.LowLevelAbstractionDefinition
-
- recalculateChildren() - Method in class org.protempa.PrimitiveParameterDefinition
-
- recalculateChildren() - Method in class org.protempa.SequentialTemporalPatternDefinition
-
- recalculateChildren() - Method in class org.protempa.SliceDefinition
-
- RecordHandler<E> - Class in org.protempa.dest.table
-
Inserts a record into a database using prepared statements in batch mode.
- RecordHandler(Connection, String) - Constructor for class org.protempa.dest.table.RecordHandler
-
- RecordHandler(Connection, String, boolean) - Constructor for class org.protempa.dest.table.RecordHandler
-
- RecordHandler(ConnectionSpec, String) - Constructor for class org.protempa.dest.table.RecordHandler
-
- Reference(String, UniqueId) - Constructor for class org.protempa.datastore.UniqueIdUniqueIdStoreCreator.Reference
-
- Reference - Class in org.protempa.dest.table
-
Specifies reference traversals from one proposition to other propositions.
- Reference(String[]) - Constructor for class org.protempa.dest.table.Reference
-
Creates an instance that specifies traversals using the specified
references from a proposition to all referred-to propositions.
- Reference(String[], String[]) - Constructor for class org.protempa.dest.table.Reference
-
Creates an instance that specifies traversals using the specified
references from a proposition only to propositions with the given ids.
- Reference(String[], String[], PropertyConstraint[]) - Constructor for class org.protempa.dest.table.Reference
-
Creates an instance that specifies traversals using the specified
references from a proposition only to propositions with the given ids and
that satisfy the specified constraints.
- Reference(String[], String[], PropertyConstraint[], Comparator<Proposition>, int) - Constructor for class org.protempa.dest.table.Reference
-
Creates an instance that specifies traversals using the specified
references from a proposition only to propositions with the given ids and
that satisfy the specified constraints.
- Reference(String[], String[], PropertyConstraint[], Comparator<Proposition>, int, int) - Constructor for class org.protempa.dest.table.Reference
-
Creates an instance that specifies traversals using the specified
references from a proposition only to propositions with the given ids and
that satisfy the specified constraints.
- Reference(String) - Constructor for class org.protempa.dest.table.Reference
-
Creates an instance that specifies traversals using the specified
reference from a proposition to all referred-to propositions.
- Reference(String, String[]) - Constructor for class org.protempa.dest.table.Reference
-
Creates an instance that specifies traversals using the specified
reference from a proposition only to propositions with the given ids.
- Reference(String, String[], PropertyConstraint[]) - Constructor for class org.protempa.dest.table.Reference
-
Creates an instance that specifies traversals using the specified
references from a proposition only to propositions with the given ids and
that satisfy the specified property constraints.
- Reference(String, String[], PropertyConstraint[], Comparator<Proposition>, int) - Constructor for class org.protempa.dest.table.Reference
-
Creates an instance that specifies traversals using the specified
reference from a proposition only to propositions with the given ids and
that satisfy the specified property constraints.
- Reference(String, String[], PropertyConstraint[], Comparator<Proposition>, int, int) - Constructor for class org.protempa.dest.table.Reference
-
Creates an instance that specifies traversals using the specified
reference from a proposition only to propositions with the given ids and
that satisfy the specified constraints.
- referenceDefinition(String) - Method in class org.protempa.AbstractPropositionDefinition
-
- referenceDefinition(String) - Method in interface org.protempa.PropositionDefinition
-
Returns the reference definition with the given name.
- ReferenceDefinition - Class in org.protempa
-
Defines a proposition definition's references.
- ReferenceDefinition(String, String, String[]) - Constructor for class org.protempa.ReferenceDefinition
-
- RegressionLine - Class in org.protempa.proposition.stats
-
A class for manipulating regression lines.
- RegressionLine(Segment<PrimitiveParameter>) - Constructor for class org.protempa.proposition.stats.RegressionLine
-
Creates a new regression line of points.
- RegressionLine.NullValueException - Exception in org.protempa.proposition.stats
-
- Relation - Class in org.protempa.proposition.interval
-
A representation of the temporal relationship between two intervals, as
described in Stillman et al.
- Relation() - Constructor for class org.protempa.proposition.interval.Relation
-
- Relation(Integer, Unit, Integer, Unit, Integer, Unit, Integer, Unit, Integer, Unit, Integer, Unit, Integer, Unit, Integer, Unit) - Constructor for class org.protempa.proposition.interval.Relation
-
Constructs a new Relation between two intervals from
Weights and Units.
- RelativeDayGranularity - Class in org.protempa.proposition.value
-
Defines units of relative time.
- RelativeDayGranularityFactory - Class in org.protempa.proposition.value
-
- RelativeDayGranularityFactory() - Constructor for class org.protempa.proposition.value.RelativeDayGranularityFactory
-
- RelativeDayUnit - Class in org.protempa.proposition.value
-
Defines units of relative time.
- RelativeDayUnitFactory - Class in org.protempa.proposition.value
-
- RelativeDayUnitFactory() - Constructor for class org.protempa.proposition.value.RelativeDayUnitFactory
-
- RelativeHourGranularity - Class in org.protempa.proposition.value
-
Defines units of relative time.
- RelativeHourGranularityFactory - Class in org.protempa.proposition.value
-
- RelativeHourGranularityFactory() - Constructor for class org.protempa.proposition.value.RelativeHourGranularityFactory
-
- RelativeHourUnit - Class in org.protempa.proposition.value
-
Defines units of relative time.
- RelativeHourUnitFactory - Class in org.protempa.proposition.value
-
- RelativeHourUnitFactory() - Constructor for class org.protempa.proposition.value.RelativeHourUnitFactory
-
- RelDbTabularWriter - Class in org.protempa.dest.table
-
- RelDbTabularWriter(ConnectionSpec, String) - Constructor for class org.protempa.dest.table.RelDbTabularWriter
-
- remove(String) - Method in interface org.protempa.backend.Configurations
-
Deletes the configurations with the specified id.
- remove(Object) - Method in class org.protempa.DataSourceResultMap
-
- remove(Object) - Method in class org.protempa.graph.DirectedGraph
-
Remove a vertex and all edges between the vertex and other vertices.
- remove(ExtendedPropositionDefinition) - Method in class org.protempa.HighLevelAbstractionDefinition
-
Removes an extended proposition definition, and all relations involving
it.
- remove(Object) - Method in class org.protempa.proposition.Sequence
-
- remove(int) - Method in class org.protempa.proposition.Sequence
-
- remove() - Method in class org.protempa.QueryResults.QueryResultsIterator
-
- removeAll(Collection<?>) - Method in class org.protempa.proposition.Sequence
-
- removeAllRelations(TemporalExtendedPropositionDefinition) - Method in class org.protempa.HighLevelAbstractionDefinition
-
Removes all relations involving a temporal extended proposition
definition.
- removeBackendListener(BackendListener<E>) - Method in class org.protempa.backend.AbstractBackend
-
- removeBackendListener(BackendListener<E>) - Method in interface org.protempa.backend.Backend
-
Unregisters a listener so that changes to the backend are no longer sent.
- removeDisplayNameOverride(String) - Method in class org.protempa.backend.BackendInstanceSpec
-
- removeEventListener(ProtempaEventListener) - Method in class org.protempa.Protempa
-
- removePrimitiveParameterId(String) - Method in class org.protempa.LowLevelAbstractionDefinition
-
Removes a primitive parameter from which this abstraction is inferred.
- removePropertyChangeListener(PropertyChangeListener) - Method in class org.protempa.AbstractPropositionDefinition
-
- removePropertyChangeListener(String, PropertyChangeListener) - Method in class org.protempa.AbstractPropositionDefinition
-
- removePropertyChangeListener(PropertyChangeListener) - Method in class org.protempa.proposition.AbstractProposition
-
- removePropertyChangeListener(PropertyChangeListener) - Method in interface org.protempa.proposition.Proposition
-
- removePropertyChangeListener(PropertyChangeListener) - Method in interface org.protempa.PropositionDefinition
-
- removePropertyChangeListener(String, PropertyChangeListener) - Method in interface org.protempa.PropositionDefinition
-
- removePropertyChangeListener(PropertyChangeListener) - Method in class org.protempa.query.And
-
- removePropertyChangeListener(String, PropertyChangeListener) - Method in class org.protempa.query.And
-
- removePropertyChangeListener(PropertyChangeListener) - Method in class org.protempa.query.DefaultQueryBuilder
-
Removes listeners for changes to this Query's properties.
- removePropertyChangeListener(String, PropertyChangeListener) - Method in class org.protempa.query.DefaultQueryBuilder
-
Removes listeners for changes to the specified property.
- removeRelation(TemporalExtendedPropositionDefinition, TemporalExtendedPropositionDefinition) - Method in class org.protempa.HighLevelAbstractionDefinition
-
Removes a relation between two temporal extended proposition definitions.
- removeRequiredOverride(String) - Method in class org.protempa.backend.BackendInstanceSpec
-
- removeSourceListener(SourceListener<S>) - Method in class org.protempa.AbstractSource
-
Removes a listener so that changes to the source are no longer sent.
- removeSourceListener(SourceListener<S>) - Method in interface org.protempa.Source
-
- replace() - Method in class org.protempa.proposition.value.BooleanValue
-
- replace() - Method in class org.protempa.proposition.value.DateValue
-
- replace() - Method in class org.protempa.proposition.value.InequalityNumberValue
-
- replace() - Method in class org.protempa.proposition.value.NominalValue
-
- replace() - Method in class org.protempa.proposition.value.NumberValue
-
- replace() - Method in class org.protempa.proposition.value.OrdinalValue
-
- replace() - Method in interface org.protempa.proposition.value.Value
-
Returns a value from a cache that is equal to this one, if such a value
exists.
- replace() - Method in class org.protempa.proposition.value.ValueList
-
- reset() - Method in class org.protempa.AbstractAbstractionDefinition
-
- reset() - Method in class org.protempa.AbstractPropositionDefinition
-
Resets this proposition definition to default values.
- reset() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- reset() - Method in class org.protempa.dest.table.ValueOutputConfigBuilder
-
- reset() - Method in class org.protempa.HighLevelAbstractionDefinition
-
- reset() - Method in class org.protempa.LowLevelAbstractionDefinition
-
- reset() - Method in class org.protempa.PrimitiveParameterDefinition
-
- reset() - Method in class org.protempa.SequentialTemporalPatternDefinition
-
- reset() - Method in class org.protempa.SliceDefinition
-
- resetState(Sequence<T>) - Method in class org.protempa.proposition.Segment
-
- resetState(Sequence<T>, int, int) - Method in class org.protempa.proposition.Segment
-
- retainAll(Collection<?>) - Method in class org.protempa.proposition.Sequence
-
- RuleBaseInstantiationException - Exception in org.protempa
-
- RuleBaseInstantiationException(Throwable) - Constructor for exception org.protempa.RuleBaseInstantiationException
-
- RuleBaseInstantiationException(String) - Constructor for exception org.protempa.RuleBaseInstantiationException
-
- RuleBaseInstantiationException(String, Throwable) - Constructor for exception org.protempa.RuleBaseInstantiationException
-
- RuleBaseInstantiationException() - Constructor for exception org.protempa.RuleBaseInstantiationException
-
- RuleCreationException - Exception in org.protempa
-
Thrown when an error occurs translating abstraction definitions into rules.
- RuleCreationException() - Constructor for exception org.protempa.RuleCreationException
-
- RuleCreationException(String, Throwable) - Constructor for exception org.protempa.RuleCreationException
-
- RuleCreationException(String) - Constructor for exception org.protempa.RuleCreationException
-
- RuleCreationException(Throwable) - Constructor for exception org.protempa.RuleCreationException
-
- save(Configuration) - Method in interface org.protempa.backend.Configurations
-
Writes the provided backend specifications to the configurations with
the specified id.
- SECOND - Static variable in class org.protempa.proposition.value.AbsoluteTimeGranularity
-
- SECOND - Static variable in class org.protempa.proposition.value.AbsoluteTimeUnit
-
- Segment<T extends TemporalProposition> - Class in org.protempa.proposition
-
A segment of a sequence of Parameter objects provided to
Detector instances' satisfiedBy() method.
- Segment(Sequence<T>, int, int) - Constructor for class org.protempa.proposition.Segment
-
- Segment(Sequence<T>) - Constructor for class org.protempa.proposition.Segment
-
- Segment(Segment<T>) - Constructor for class org.protempa.proposition.Segment
-
- Sequence<T extends TemporalProposition> - Class in org.protempa.proposition
-
A list of Propositions sorted chronologically.
- Sequence(String) - Constructor for class org.protempa.proposition.Sequence
-
- Sequence(String, int) - Constructor for class org.protempa.proposition.Sequence
-
- Sequence(Set<String>) - Constructor for class org.protempa.proposition.Sequence
-
- Sequence(String, List<T>) - Constructor for class org.protempa.proposition.Sequence
-
- Sequence(Set<String>, List<T>) - Constructor for class org.protempa.proposition.Sequence
-
- SequentialTemporalPatternDefinition - Class in org.protempa
-
- SequentialTemporalPatternDefinition(String) - Constructor for class org.protempa.SequentialTemporalPatternDefinition
-
- SequentialTemporalPatternDefinition.SubsequentTemporalExtendedPropositionDefinition - Class in org.protempa
-
- set(int, T) - Method in class org.protempa.proposition.Sequence
-
- setAbbrevDisplayName(String) - Method in class org.protempa.Term
-
- setAbbrevDisplayName(String) - Method in class org.protempa.valueset.ValueSetElementBuilder
-
- setAbbreviatedDisplayName(String) - Method in class org.protempa.AbstractPropositionDefinition
-
Sets this knowledge definition's abbreviated display name.
- setAbbreviatedDisplayName(String) - Method in class org.protempa.ExtendedPropositionDefinition
-
- setAccessed(Date) - Method in class org.protempa.AbstractPropositionDefinition
-
- setAdvanceRowSkipEnd(int) - Method in class org.protempa.AbstractAlgorithm
-
- setAlgorithmId(String) - Method in class org.protempa.LowLevelAbstractionDefinition
-
- setAlgorithms(String) - Method in class org.protempa.backend.asb.java.JavaAlgorithmBackend
-
- setAlgorithmSourceBackendSections(List<BackendInstanceSpec<AlgorithmSourceBackend>>) - Method in class org.protempa.backend.Configuration
-
- setAllowPartialMatches(boolean) - Method in class org.protempa.SequentialTemporalPatternDefinition
-
Sets whether to match if only the first, first and second, etc.
- setAnd(Filter) - Method in class org.protempa.backend.dsb.filter.AbstractFilter
-
- setAnded(List<E>) - Method in class org.protempa.query.And
-
- setAttributeBuilders(AttributeBuilder[]) - Method in class org.protempa.valueset.ValueSetElementBuilder
-
- setAttributes(Attribute[]) - Method in class org.protempa.AbstractPropositionDefinition
-
- setBackendProvider(BackendProvider) - Static method in class org.protempa.backend.BackendProviderManager
-
- setBackendProviderClassLoader(ClassLoader) - Static method in class org.protempa.backend.BackendProviderManager
-
- setChildrenToParents(Map<String, String>) - Method in class org.protempa.dest.DefaultStatisticsBuilder
-
- setComparator(ValueComparator) - Method in class org.protempa.proposition.value.InequalityNumberValueBuilder
-
- setConcatenable(boolean) - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
Sets whether this type of compound low-level abstraction is concatenable.
- setConcatenable(boolean) - Method in class org.protempa.HighLevelAbstractionDefinition
-
Sets whether this type of high-level abstraction is concatenable.
- setConcatenable(boolean) - Method in class org.protempa.LowLevelAbstractionDefinition
-
Sets whether this type of low-level abstraction is concatenable.
- setConcatenable(boolean) - Method in class org.protempa.SequentialTemporalPatternDefinition
-
Sets whether this type of high-level abstraction is concatenable.
- setConfigurationId(String) - Method in class org.protempa.backend.Configuration
-
- setConfigurationsId(String) - Method in class org.protempa.backend.BackendInstanceSpec
-
- setConfigurationsProvider(ConfigurationsProvider) - Static method in class org.protempa.backend.ConfigurationsProviderManager
-
Sets the configurations provider, overriding any configurations provider
that was found by service discovery.
- setConfigurationsProviderClassLoader(ClassLoader) - Static method in class org.protempa.backend.ConfigurationsProviderManager
-
- setContextId(String) - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
- setContextId(String) - Method in class org.protempa.LowLevelAbstractionDefinition
-
- setContextId(String) - Method in class org.protempa.proposition.AbstractParameter
-
- setCounts(Map<String, Integer>) - Method in class org.protempa.dest.DefaultStatisticsBuilder
-
- setCreated(Date) - Method in class org.protempa.AbstractPropositionDefinition
-
- setCreateDate(Date) - Method in class org.protempa.proposition.AbstractProposition
-
Sets the date this proposition was created according to the source
system from which it was obtained, or for derived propositions, the
date it was created through the temporal abstraction process.
- setDataSourceBackendId(String) - Method in class org.protempa.backend.AbstractCommonsDataSourceBackend
-
Deprecated.
- setDataSourceBackendSections(List<BackendInstanceSpec<DataSourceBackend>>) - Method in class org.protempa.backend.Configuration
-
- setDate(Date) - Method in class org.protempa.proposition.value.DateValueBuilder
-
- setDeclaringPropId(String) - Method in class org.protempa.PropertyDefinitionBuilder
-
- setDeleteDate(Date) - Method in class org.protempa.proposition.AbstractProposition
-
Sets the timestamp this proposition was deleted from the source system.
- setDescription(String) - Method in class org.protempa.AbstractPropositionDefinition
-
- setDescription(String) - Method in class org.protempa.Term
-
- setDescription(String) - Method in class org.protempa.Terminology
-
- setDirectChildren(String[]) - Method in class org.protempa.Term
-
- setDisplayName(String) - Method in class org.protempa.AbstractPropositionDefinition
-
Sets this proposition definition's human-readable display name.
- setDisplayName(String) - Method in class org.protempa.ExtendedPropositionDefinition
-
- setDisplayName(String) - Method in class org.protempa.PropertyDefinitionBuilder
-
- setDisplayName(String) - Method in class org.protempa.Term
-
- setDisplayName(String) - Method in class org.protempa.valueset.ValueSetBuilder
-
- setDisplayName(String) - Method in class org.protempa.valueset.ValueSetElementBuilder
-
- setDownloadDate(Date) - Method in class org.protempa.proposition.AbstractProposition
-
Sets the date this proposition was downloaded from the source system.
- setDownloaded(Date) - Method in class org.protempa.AbstractPropositionDefinition
-
- setEdge(Object, Object, Weight) - Method in class org.protempa.graph.DirectedGraph
-
Set the edge between two vertices.
- setElements(ValueBuilder<V>[]) - Method in class org.protempa.proposition.value.ValueListBuilder
-
- setEventListeners(List<? extends ProtempaEventListener>) - Method in class org.protempa.AbstractSource
-
- setEventListeners(List<? extends ProtempaEventListener>) - Method in class org.protempa.backend.AbstractBackend
-
- setEventListeners(List<? extends ProtempaEventListener>) - Method in interface org.protempa.backend.Backend
-
- setEventListeners(List<? extends ProtempaEventListener>) - Method in interface org.protempa.Source
-
- setFatal(boolean) - Method in class org.protempa.backend.dsb.DataValidationEvent
-
- setFilters(Filter) - Method in class org.protempa.query.DefaultQueryBuilder
-
Sets the filters to apply to this query.
- setFinishAbstractParamValue(Value) - Method in class org.protempa.TemporalPatternOffset
-
- setFinishIntervalSide(Interval.Side) - Method in class org.protempa.ContextOffset
-
- setFinishIntervalSide(Interval.Side) - Method in class org.protempa.TemporalPatternOffset
-
- setFinishOffset(Integer) - Method in class org.protempa.ContextOffset
-
- setFinishOffset(int) - Method in class org.protempa.TemporalPatternOffset
-
- setFinishOffsetUnits(Unit) - Method in class org.protempa.ContextOffset
-
- setFinishOffsetUnits(Unit) - Method in class org.protempa.TemporalPatternOffset
-
- setFinishTemporalExtendedPropositionDefinition(TemporalExtendedPropositionDefinition) - Method in class org.protempa.TemporalPatternOffset
-
- setFirstTemporalExtendedPropositionDefinition(TemporalExtendedPropositionDefinition) - Method in class org.protempa.SequentialTemporalPatternDefinition
-
- setGapFunction(GapFunction) - Method in class org.protempa.AbstractAbstractionDefinition
-
- setGapFunction(GapFunction) - Method in class org.protempa.ContextDefinition
-
- setGapFunctionBetweenValues(GapFunction) - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
- setGranularity(Granularity) - Method in class org.protempa.proposition.PrimitiveParameter
-
Sets the granularity of this parameter's timestamp.
- setGranularityFactory(GranularityFactory) - Method in class org.protempa.backend.dsb.AbstractDataSourceBackend
-
- setId(String) - Method in class org.protempa.backend.AbstractBackend
-
- setId(String) - Method in class org.protempa.backend.AbstractCommonsAlgorithmSourceBackend
-
- setId(String) - Method in class org.protempa.backend.AbstractCommonsDataSourceBackend
-
- setId(String) - Method in class org.protempa.backend.AbstractCommonsKnowledgeSourceBackend
-
- setId(String) - Method in class org.protempa.backend.AbstractCommonsTermSourceBackend
-
- setId(String) - Method in class org.protempa.PropertyDefinitionBuilder
-
- setId(String) - Method in class org.protempa.valueset.ValueSetBuilder
-
- setInDataSource(boolean) - Method in class org.protempa.AbstractPropositionDefinition
-
- setIndex(int) - Method in class org.protempa.proposition.value.OrdinalValueBuilder
-
- setInducedBy(TemporalExtendedPropositionDefinition[]) - Method in class org.protempa.ContextDefinition
-
- setInterpretationContext(ContextDefinition) - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
- setInterval(Interval) - Method in class org.protempa.proposition.AbstractParameter
-
- setInterval(Interval) - Method in class org.protempa.proposition.Context
-
- setInterval(Interval) - Method in class org.protempa.proposition.Event
-
- setInterval(Interval) - Method in class org.protempa.proposition.TemporalProposition
-
Sets the valid interval.
- setInValueType(ValueType) - Method in class org.protempa.AbstractAlgorithm
-
- setInverseIsA(String...) - Method in class org.protempa.AbstractPropositionDefinition
-
Sets the children of this proposition definition.
- setInverseIsA(String[]) - Method in class org.protempa.Term
-
- setKeyIdComparator(Comparator<Object>) - Method in class org.protempa.backend.dsb.AbstractDataSourceBackend
-
- setKeyIds(String[]) - Method in class org.protempa.query.DefaultQueryBuilder
-
Sets the key ids to be queried.
- setKeyType(String) - Method in class org.protempa.backend.AbstractCommonsDataSourceBackend
-
- setKeyType(String) - Method in class org.protempa.backend.dsb.AbstractDataSourceBackend
-
- setKnowledgeSourceBackendSections(List<BackendInstanceSpec<KnowledgeSourceBackend>>) - Method in class org.protempa.backend.Configuration
-
- setLine(Long) - Method in class org.protempa.backend.dsb.DataValidationEvent
-
- setLowerBoundBuilder(OrderedValueBuilder) - Method in class org.protempa.valueset.ValueSetBuilder
-
- setMaximumDuration(Integer) - Method in class org.protempa.LowLevelAbstractionDefinition
-
- setMaximumDurationUnits(Unit) - Method in class org.protempa.LowLevelAbstractionDefinition
-
- setMaximumGap(Integer) - Method in class org.protempa.MinMaxGapFunction
-
- setMaximumGap(Integer) - Method in class org.protempa.SimpleGapFunction
-
Sets the the gap function's maximum gap value.
- setMaximumGapBetweenValues(Integer) - Method in class org.protempa.LowLevelAbstractionDefinition
-
- setMaximumGapBetweenValuesUnits(Unit) - Method in class org.protempa.LowLevelAbstractionDefinition
-
- setMaximumGapUnit(Unit) - Method in class org.protempa.MinMaxGapFunction
-
- setMaximumGapUnit(Unit) - Method in class org.protempa.SimpleGapFunction
-
Sets the maximum gap value's units.
- setMaximumNumberOfValues(int) - Method in class org.protempa.AbstractAlgorithm
-
Sets the default maximum sliding window width.
- setMaximumNumberOfValues(int) - Method in class org.protempa.LowLevelAbstractionDefinition
-
- setMaxIndex(int) - Method in class org.protempa.SliceDefinition
-
Sets the upper limit of the range for this slice (exclusive).
- setMaxLength(Integer) - Method in class org.protempa.TemporalExtendedPropositionDefinition
-
- setMaxLengthUnit(Unit) - Method in class org.protempa.TemporalExtendedPropositionDefinition
-
- setMaxOverlapping(int) - Method in class org.protempa.LowLevelAbstractionDefinition
-
Enable the max-overlapping restart search directive.
- setMergedInterval(boolean) - Method in class org.protempa.SliceDefinition
-
- setMessage(String) - Method in class org.protempa.backend.dsb.DataValidationEvent
-
- setMinimumDuration(Integer) - Method in class org.protempa.LowLevelAbstractionDefinition
-
- setMinimumDurationUnits(Unit) - Method in class org.protempa.LowLevelAbstractionDefinition
-
- setMinimumGap(Integer) - Method in class org.protempa.MinMaxGapFunction
-
- setMinimumGapBetweenValues(Integer) - Method in class org.protempa.LowLevelAbstractionDefinition
-
- setMinimumGapBetweenValuesUnits(Unit) - Method in class org.protempa.LowLevelAbstractionDefinition
-
- setMinimumGapUnit(Unit) - Method in class org.protempa.MinMaxGapFunction
-
- setMinimumNumberOfValues(int) - Method in class org.protempa.AbstractAlgorithm
-
Sets the default minimum sliding window width.
- setMinimumNumberOfValues(int) - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
Sets the minimum number of consecutive intervals that must have the same
value before this abstraction is asserted.
- setMinimumNumberOfValues(int) - Method in class org.protempa.LowLevelAbstractionDefinition
-
- setMinIndex(int) - Method in class org.protempa.SliceDefinition
-
Sets the lower limit of the range for this slice (inclusive).
- setMinLength(Integer) - Method in class org.protempa.TemporalExtendedPropositionDefinition
-
- setMinLengthUnit(Unit) - Method in class org.protempa.TemporalExtendedPropositionDefinition
-
- setName(String) - Method in class org.protempa.AttributeBuilder
-
- setName(String) - Method in class org.protempa.query.DefaultQueryBuilder
-
- setNumberOfKeys(int) - Method in class org.protempa.dest.DefaultStatisticsBuilder
-
- setOffset(ContextOffset) - Method in class org.protempa.ContextDefinition
-
Sets the start and finish of an interval of this context relative to its
inducing interval.
- setOrdered(boolean) - Method in class org.protempa.valueset.ValueSetBuilder
-
- setParameterComp(String, ValueComparator) - Method in class org.protempa.LowLevelAbstractionValueDefinition
-
- setParameters(AlgorithmParameter[]) - Method in class org.protempa.AbstractAlgorithm
-
- setParameters(PreparedStatement, E) - Method in class org.protempa.dest.table.RecordHandler
-
- setParameterValue(String, Value) - Method in class org.protempa.LowLevelAbstractionValueDefinition
-
- setPosition(Long) - Method in class org.protempa.proposition.PrimitiveParameter
-
Sets this parameter's timestamp (or other kind of position value).
- setProperty(String, Object) - Method in class org.protempa.backend.BackendInstanceSpec
-
- setProperty(BackendPropertySpec, Object) - Method in class org.protempa.backend.BackendInstanceSpec
-
- setProperty(BackendInstanceSpec, BackendPropertySpec, Object) - Method in enum org.protempa.backend.BackendPropertyType
-
- setProperty(String, Value) - Method in class org.protempa.proposition.AbstractProposition
-
- setPropertyConstraints(PropertyConstraint[]) - Method in class org.protempa.ExtendedPropositionDefinition
-
- setPropertyDefinitions(PropertyDefinition...) - Method in class org.protempa.AbstractPropositionDefinition
-
- setPropertyName(String) - Method in class org.protempa.PropertyConstraint
-
- setPropertyValueAbbrevDisplayName(String) - Method in class org.protempa.dest.table.ValueOutputConfigBuilder
-
- setPropertyValueDisplayName(String) - Method in class org.protempa.dest.table.ValueOutputConfigBuilder
-
- setPropId(String) - Method in class org.protempa.PropertyDefinitionBuilder
-
- setPropositionDefinitions(PropositionDefinition[]) - Method in class org.protempa.query.DefaultQueryBuilder
-
Returns an optional set of user-specified proposition definitions.
- setPropositionId(String) - Method in class org.protempa.AbstractPropositionDefinition
-
Sets the proposition id of propositions derived by this proposition
definition.
- setPropositionIds(String[]) - Method in class org.protempa.query.DefaultQueryBuilder
-
Sets the proposition ids to be queried.
- setQueryMode(QueryMode) - Method in class org.protempa.query.DefaultQueryBuilder
-
- setReferenceDefinitions(ReferenceDefinition...) - Method in class org.protempa.AbstractPropositionDefinition
-
- setReferences(String, List<UniqueId>) - Method in class org.protempa.proposition.AbstractProposition
-
- setRelation(TemporalExtendedPropositionDefinition, TemporalExtendedPropositionDefinition, Relation) - Method in class org.protempa.HighLevelAbstractionDefinition
-
Sets the relation between the two temporal extended proposition
definitions.
- setSemanticType(String) - Method in class org.protempa.Term
-
- setShowPropertyValueAbbrevDisplayName(boolean) - Method in class org.protempa.dest.table.ValueOutputConfigBuilder
-
- setShowPropertyValueDisplayName(boolean) - Method in class org.protempa.dest.table.ValueOutputConfigBuilder
-
- setSkip(int) - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
- setSkip(int) - Method in class org.protempa.LowLevelAbstractionDefinition
-
Enable the skip restart search directive.
- setSkipEnd(int) - Method in class org.protempa.LowLevelAbstractionDefinition
-
Enable the skip-end restart search directive.
- setSkipStart(int) - Method in class org.protempa.LowLevelAbstractionDefinition
-
Enable the skip-start restart search directive.
- setSlidingWindowWidthMode(SlidingWindowWidthMode) - Method in class org.protempa.LowLevelAbstractionDefinition
-
Sets the sliding window width mode.
- setSolid(boolean) - Method in class org.protempa.HighLevelAbstractionDefinition
-
Sets whether intervals of this type are solid, i.e., never hold over
properly overlapping intervals.
- setSolid(boolean) - Method in class org.protempa.SequentialTemporalPatternDefinition
-
Sets whether intervals of this type are solid, i.e., never hold over
properly overlapping intervals.
- setSourceId(SourceId) - Method in class org.protempa.AbstractPropositionDefinition
-
- setSourceIdBuilder(SourceIdBuilder) - Method in class org.protempa.valueset.ValueSetBuilder
-
- setSourceIdStr(String) - Method in class org.protempa.DefaultSourceIdBuilder
-
- setSourceSystem(SourceSystem) - Method in class org.protempa.proposition.AbstractProposition
-
- setStartAbstractParamValue(Value) - Method in class org.protempa.TemporalPatternOffset
-
- setStartIntervalSide(Interval.Side) - Method in class org.protempa.ContextOffset
-
- setStartIntervalSide(Interval.Side) - Method in class org.protempa.TemporalPatternOffset
-
- setStartOffset(Integer) - Method in class org.protempa.ContextOffset
-
- setStartOffset(int) - Method in class org.protempa.TemporalPatternOffset
-
- setStartOffsetUnits(Unit) - Method in class org.protempa.ContextOffset
-
- setStartOffsetUnits(Unit) - Method in class org.protempa.TemporalPatternOffset
-
- setStartTemporalExtendedPropositionDefinition(TemporalExtendedPropositionDefinition) - Method in class org.protempa.TemporalPatternOffset
-
- setSubContexts(String[]) - Method in class org.protempa.ContextDefinition
-
Sets the ids of other context definitions that, together with this one,
have a specific meaning when their intervals intersect.
- setSubsequentTemporalExtendedPropositionDefinitions(SequentialTemporalPatternDefinition.SubsequentTemporalExtendedPropositionDefinition[]) - Method in class org.protempa.SequentialTemporalPatternDefinition
-
- setTemporalOffset(TemporalPatternOffset) - Method in class org.protempa.HighLevelAbstractionDefinition
-
- setTemporalOffset(TemporalPatternOffset) - Method in class org.protempa.SequentialTemporalPatternDefinition
-
- setTermIds(String...) - Method in class org.protempa.AbstractPropositionDefinition
-
Assigns this proposition with associated TermDefinition ids.
- setTermIds(And<String>[]) - Method in class org.protempa.query.DefaultQueryBuilder
-
Sets the term ids to be queried in disjunctive normal form.
- setTermSourceBackendSections(List<BackendInstanceSpec<TermSourceBackend>>) - Method in class org.protempa.backend.Configuration
-
- setTimestamp(Date) - Method in class org.protempa.backend.dsb.DataValidationEvent
-
- setType(String) - Method in class org.protempa.backend.dsb.DataValidationEvent
-
- setType(PropositionValueColumnSpec.Type) - Method in class org.protempa.dest.table.PropositionValueColumnSpec
-
- setUnitFactory(UnitFactory) - Method in class org.protempa.backend.dsb.AbstractDataSourceBackend
-
- setUnits(String) - Method in class org.protempa.PrimitiveParameterDefinition
-
Sets the units for values of this primitive parameter.
- setUpdated(Date) - Method in class org.protempa.AbstractPropositionDefinition
-
- setUpdateDate(Date) - Method in class org.protempa.proposition.AbstractProposition
-
Sets the timestamp this proposition was last updated according to the
source system from which it was obtained, or for derived propositions,
the date it was last updated through the temporal abstraction process.
- setUpperBoundBuilder(OrderedValueBuilder) - Method in class org.protempa.valueset.ValueSetBuilder
-
- setURI(URI) - Method in class org.protempa.backend.dsb.DataValidationEvent
-
- setUsername(String) - Method in class org.protempa.query.DefaultQueryBuilder
-
- setVal(BigDecimal) - Method in class org.protempa.proposition.value.InequalityNumberValueBuilder
-
- setVal(String) - Method in class org.protempa.proposition.value.NominalValueBuilder
-
- setVal(BigDecimal) - Method in class org.protempa.proposition.value.NumberValueBuilder
-
- setValidatePropositionIds(boolean) - Static method in class org.protempa.query.DefaultQueryBuilder
-
Set the value of the flag that determined whether the build method
validates proposition IDs.
- setValue(Value) - Method in class org.protempa.ExtendedParameterDefinition
-
- setValue(Value) - Method in class org.protempa.LowLevelAbstractionValueDefinition
-
- setValue(Value) - Method in class org.protempa.PropertyConstraint
-
- setValue(Value) - Method in class org.protempa.proposition.TemporalParameter
-
- setValue(boolean) - Method in class org.protempa.proposition.value.BooleanValueBuilder
-
- setValue(String) - Method in class org.protempa.proposition.value.OrdinalValueBuilder
-
- setValue(Value) - Method in class org.protempa.TemporalExtendedParameterDefinition
-
- setValueBuilder(ValueBuilder) - Method in class org.protempa.AttributeBuilder
-
- setValueBuilder(ValueBuilder) - Method in class org.protempa.valueset.ValueSetElementBuilder
-
- setValueComp(ValueComparator) - Method in class org.protempa.PropertyConstraint
-
- setValueDefinitionMatchOperator(CompoundLowLevelAbstractionDefinition.ValueDefinitionMatchOperator) - Method in class org.protempa.CompoundLowLevelAbstractionDefinition
-
Sets the operator that is applied to each interval's low-level
abstraction values to determine the value to set for this abstraction.
- setValueSetElementBuilders(ValueSetElementBuilder[]) - Method in class org.protempa.valueset.ValueSetBuilder
-
- setValueSetId(String) - Method in class org.protempa.PropertyDefinitionBuilder
-
- setValueType(ValueType) - Method in class org.protempa.LowLevelAbstractionDefinition
-
- setValueType(ValueType) - Method in class org.protempa.PrimitiveParameterDefinition
-
Sets the value factory for this primitive parameter definition.
- setValueType(ValueType) - Method in class org.protempa.PropertyDefinitionBuilder
-
- setVersion(String) - Method in class org.protempa.AbstractPropositionDefinition
-
- setVersion(String) - Method in class org.protempa.Terminology
-
- setVisited(boolean) - Method in class org.protempa.graph.Edge
-
- showAbbrevDisplayName() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- showAbbrevDisplayName() - Method in class org.protempa.dest.table.OutputConfig
-
- showDisplayName() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- showDisplayName() - Method in class org.protempa.dest.table.OutputConfig
-
- showFinish() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- showFinish() - Method in class org.protempa.dest.table.OutputConfig
-
- showId() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- showId() - Method in class org.protempa.dest.table.OutputConfig
-
- showLength() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- showLength() - Method in class org.protempa.dest.table.OutputConfig
-
- showStartOrTimestamp() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- showStartOrTimestamp() - Method in class org.protempa.dest.table.OutputConfig
-
- showUniqueId() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- showUniqueId() - Method in class org.protempa.dest.table.OutputConfig
-
- showValue() - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- showValue() - Method in class org.protempa.dest.table.OutputConfig
-
- SimpleGapFunction - Class in org.protempa
-
Implements a gap function with a simple max range: if one interval is before
the second and the distance between them is less than or equal to the
supplied maximum gap, then the function returns true,
otherwise it returns false.
- SimpleGapFunction() - Constructor for class org.protempa.SimpleGapFunction
-
Instantiates an instance with the default maximum gap and units.
- SimpleGapFunction(Integer, Unit) - Constructor for class org.protempa.SimpleGapFunction
-
Initializes a gap function with a maximum gap and units.
- SimpleInterval - Class in org.protempa.proposition.interval
-
An Interval for completely specified minimum and maximum starts and finishes,
and 0 duration.
- SimpleKnowledgeSourceBackend - Class in org.protempa.backend.ksb
-
- SimpleKnowledgeSourceBackend() - Constructor for class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- SimpleKnowledgeSourceBackend(PropositionDefinition...) - Constructor for class org.protempa.backend.ksb.SimpleKnowledgeSourceBackend
-
- size() - Method in class org.protempa.DataSourceResultMap
-
- size() - Method in class org.protempa.graph.DirectedGraph
-
Get the number of vertices.
- size() - Method in class org.protempa.proposition.Segment
-
- size() - Method in class org.protempa.proposition.Sequence
-
- SliceDefinition - Class in org.protempa
-
- SliceDefinition(String) - Constructor for class org.protempa.SliceDefinition
-
- SlidingWindowWidthMode - Enum in org.protempa
-
For specifying whether a low-level abstraction definition's or aggregation
definition's sliding window width should be the algorithm's default
(DEFAULT), the entire width of a time series (ALL), or a specified minimum
and maximum number of values (RANGE).
- Source<S extends SourceUpdatedEvent,B extends Backend<?>,T extends BackendUpdatedEvent> - Interface in org.protempa
-
- SourceClosedUnexpectedlyEvent<S extends SourceUpdatedEvent,B extends Backend<T>,T extends BackendUpdatedEvent> - Class in org.protempa
-
- SourceClosedUnexpectedlyEvent(Source<S, B, T>) - Constructor for class org.protempa.SourceClosedUnexpectedlyEvent
-
Initializes the event with the
Source that closed unexpectedly.
- SourceCloseException - Exception in org.protempa
-
Class for exceptions that are thrown when an error occurs while closing
a data, knowledge, algorithm or term source.
- SourceFactory - Class in org.protempa
-
- SourceFactory(Configuration) - Constructor for class org.protempa.SourceFactory
-
- SourceFactory(Configurations, String) - Constructor for class org.protempa.SourceFactory
-
- SourceFactory(String) - Constructor for class org.protempa.SourceFactory
-
- SourceId - Class in org.protempa.proposition
-
- SourceId() - Constructor for class org.protempa.proposition.SourceId
-
- SourceId - Interface in org.protempa
-
Interface for classes that specify the source of proposition definitions and
value sets.
- SourceIdBuilder - Interface in org.protempa
-
- SourceIdFactory<E> - Interface in org.protempa
-
- SourceListener<E extends SourceUpdatedEvent> - Interface in org.protempa
-
Listener interface for when the source changes.
- SourceSystem - Class in org.protempa
-
- sourceUpdated(E) - Method in interface org.protempa.SourceListener
-
The method that gets called when the source is updated.
- SourceUpdatedEvent - Class in org.protempa
-
Source updated events.
- start(Collection<PropositionDefinition>) - Method in class org.protempa.dest.AbstractQueryResultsHandler
-
- start(Collection<PropositionDefinition>) - Method in class org.protempa.dest.deid.DeidentifiedQueryResultsHandler
-
- start(Collection<PropositionDefinition>) - Method in class org.protempa.dest.keyloader.KeyLoaderQueryResultsHandler
-
- start(Collection<PropositionDefinition>) - Method in interface org.protempa.dest.QueryResultsHandler
-
- STARTED_BY - Static variable in class org.protempa.proposition.interval.Relation
-
- startOrTimestampHeading(String) - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- STARTS - Static variable in class org.protempa.proposition.interval.Relation
-
- StateAlgorithm - Class in org.protempa.backend.asb.java
-
Detects whether the values of a time sequence segment are above and/or below
a specified value.
- StateAlgorithm(Algorithms, String) - Constructor for class org.protempa.backend.asb.java.StateAlgorithm
-
- Statistics - Interface in org.protempa.dest
-
Collect various statistics about the data in the dataset previously
written out.
- StatisticsException - Exception in org.protempa.dest
-
- StatisticsException() - Constructor for exception org.protempa.dest.StatisticsException
-
- StatisticsException(String, Throwable) - Constructor for exception org.protempa.dest.StatisticsException
-
- StatisticsException(String) - Constructor for exception org.protempa.dest.StatisticsException
-
- StatisticsException(Throwable) - Constructor for exception org.protempa.dest.StatisticsException
-
- subList(int, int) - Method in class org.protempa.proposition.Sequence
-
- SubsequentTemporalExtendedPropositionDefinition(Relation, TemporalExtendedPropositionDefinition) - Constructor for class org.protempa.SequentialTemporalPatternDefinition.SubsequentTemporalExtendedPropositionDefinition
-
- subtract(Weight) - Method in class org.protempa.graph.Weight
-
Creates a new weight the value equal to the difference between the two
weights.
- v - Variable in class org.protempa.proposition.interval.Interval
-
- validate(Object) - Method in class org.protempa.backend.BackendPropertySpec
-
- validate(String, E) - Method in interface org.protempa.backend.BackendPropertyValidator
-
- validate(String, Object) - Method in class org.protempa.backend.DefaultBackendPropertyValidator
-
- validate() - Method in class org.protempa.dest.AbstractQueryResultsHandler
-
- validate() - Method in class org.protempa.dest.deid.DeidentifiedQueryResultsHandler
-
- validate() - Method in interface org.protempa.dest.QueryResultsHandler
-
Validates this query results handler's specification.
- validate(KnowledgeSource) - Method in class org.protempa.dest.table.AtLeastNColumnSpec
-
- validate(KnowledgeSource) - Method in class org.protempa.dest.table.ConstantColumnSpec
-
- validate(KnowledgeSource) - Method in class org.protempa.dest.table.CountColumnSpec
-
- validate(KnowledgeSource) - Method in class org.protempa.dest.table.DistanceBetweenColumnSpec
-
- validate(KnowledgeSource) - Method in class org.protempa.dest.table.PropositionColumnSpec
-
- validate(KnowledgeSource) - Method in class org.protempa.dest.table.PropositionValueColumnSpec
-
- validate(KnowledgeSource) - Method in interface org.protempa.dest.table.TableColumnSpec
-
Validates the fields of this column specification against the
knowledge source.
- validateConfiguration(KnowledgeSource) - Method in interface org.protempa.backend.dsb.DataSourceBackend
-
- validateData(KnowledgeSource) - Method in interface org.protempa.backend.dsb.DataSourceBackend
-
- ValidateDataSource - Class in org.protempa.cli
-
Validates the data source for consistency between the knowledge source
and the database mappings.
- ValidateDataSource() - Constructor for class org.protempa.cli.ValidateDataSource
-
- validateDataSourceBackendConfigurations() - Method in class org.protempa.Protempa
-
- validateDataSourceBackendData() - Method in class org.protempa.Protempa
-
Runs each data source backend's data validation routine.
- value(String) - Method in class org.protempa.AlgorithmArguments
-
- value() - Method in class org.protempa.graph.Weight
-
Gets the value of this weight.
- Value - Interface in org.protempa.proposition.value
-
A value (number, string, category, etc.).
- ValueBuilder<V extends Value> - Interface in org.protempa.proposition.value
-
- ValueClassification - Class in org.protempa
-
- ValueClassification(String, String, String) - Constructor for class org.protempa.ValueClassification
-
- valueComp(String) - Method in class org.protempa.AlgorithmArguments
-
- ValueComparator - Enum in org.protempa.proposition.value
-
Represents the possible valid comparisons between two
Value objects.
- ValueComparatorFormatException - Exception in org.protempa.proposition.value
-
- ValueComparatorFormatException() - Constructor for exception org.protempa.proposition.value.ValueComparatorFormatException
-
- ValueFilter - Class in org.protempa.backend.dsb.filter
-
- ValueFilter(String[], ValueComparator, Value) - Constructor for class org.protempa.backend.dsb.filter.ValueFilter
-
- valueHeading(String) - Method in class org.protempa.dest.table.OutputConfig.Builder
-
- ValueList<V extends Value> - Class in org.protempa.proposition.value
-
Represents lists of values.
- ValueList(int) - Constructor for class org.protempa.proposition.value.ValueList
-
- ValueList() - Constructor for class org.protempa.proposition.value.ValueList
-
Creates an empty list of values.
- ValueList(List<V>) - Constructor for class org.protempa.proposition.value.ValueList
-
Creates a list of values from the provided List of values.
- ValueListBuilder<V extends Value> - Class in org.protempa.proposition.value
-
- ValueListBuilder() - Constructor for class org.protempa.proposition.value.ValueListBuilder
-
- ValueListBuilder(ValueList<V>) - Constructor for class org.protempa.proposition.value.ValueListBuilder
-
- valueOf(String) - Static method in enum org.protempa.backend.BackendPropertyType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.protempa.CompoundLowLevelAbstractionDefinition.ValueDefinitionMatchOperator
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.protempa.dest.table.Derivation.Behavior
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.protempa.dest.table.PropositionValueColumnSpec.Type
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.protempa.graph.BellmanFord.Mode
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.protempa.proposition.interval.Interval.Side
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.protempa.proposition.value.ValueComparator
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.protempa.proposition.value.ValueType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.protempa.ProtempaEvent.Level
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.protempa.ProtempaEvent.Type
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.protempa.ProtempaUtil.PropositionDefinitionDisplayNameComparator.Style
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.protempa.query.QueryMode
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.protempa.SlidingWindowWidthMode
-
Returns the enum constant of this type with the specified name.
- ValueOutputConfig - Class in org.protempa.dest.table
-
- ValueOutputConfig() - Constructor for class org.protempa.dest.table.ValueOutputConfig
-
- ValueOutputConfig(boolean, boolean, String, String) - Constructor for class org.protempa.dest.table.ValueOutputConfig
-
- ValueOutputConfigBuilder - Class in org.protempa.dest.table
-
- ValueOutputConfigBuilder() - Constructor for class org.protempa.dest.table.ValueOutputConfigBuilder
-
- values() - Static method in enum org.protempa.backend.BackendPropertyType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.protempa.CompoundLowLevelAbstractionDefinition.ValueDefinitionMatchOperator
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Method in class org.protempa.DataSourceResultMap
-
- values() - Static method in enum org.protempa.dest.table.Derivation.Behavior
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.protempa.dest.table.PropositionValueColumnSpec.Type
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.protempa.graph.BellmanFord.Mode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.protempa.proposition.interval.Interval.Side
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.protempa.proposition.value.ValueComparator
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.protempa.proposition.value.ValueType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.protempa.ProtempaEvent.Level
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.protempa.ProtempaEvent.Type
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.protempa.ProtempaUtil.PropositionDefinitionDisplayNameComparator.Style
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.protempa.query.QueryMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.protempa.SlidingWindowWidthMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- ValueSet - Class in org.protempa.valueset
-
For specifying value sets.
- ValueSet(String, String, OrderedValue, OrderedValue, SourceId) - Constructor for class org.protempa.valueset.ValueSet
-
- ValueSet(String, String, ValueSetElement[], SourceId) - Constructor for class org.protempa.valueset.ValueSet
-
- ValueSet(String, String, ValueSetElement[], boolean, SourceId) - Constructor for class org.protempa.valueset.ValueSet
-
Instantiates a new value set with the specified values (value set
elements).
- ValueSetBuilder - Class in org.protempa.valueset
-
- ValueSetBuilder() - Constructor for class org.protempa.valueset.ValueSetBuilder
-
- ValueSetElement - Class in org.protempa.valueset
-
For specifying the values of a value set.
- ValueSetElement(Value) - Constructor for class org.protempa.valueset.ValueSetElement
-
- ValueSetElement(Value, String) - Constructor for class org.protempa.valueset.ValueSetElement
-
- ValueSetElement(Value, String, String) - Constructor for class org.protempa.valueset.ValueSetElement
-
- ValueSetElement(Value, String, String, Attribute[]) - Constructor for class org.protempa.valueset.ValueSetElement
-
Instantiates a value of a value set.
- ValueSetElementBuilder - Class in org.protempa.valueset
-
- ValueSetElementBuilder() - Constructor for class org.protempa.valueset.ValueSetElementBuilder
-
- ValueType - Enum in org.protempa.proposition.value
-
Represents types of values of propositions and properties, and provides a
method for parsing them from strings.
- ValueVisitable - Interface in org.protempa.proposition.value
-
Interface for accepting a value.
- ValueVisitor - Interface in org.protempa.proposition.value
-
Interface for classes that do processing on propositions.
- visit(Collection<PropositionDefinition>) - Method in class org.protempa.AbstractPropositionDefinitionCheckedVisitor
-
Processes a collection of proposition definitions.
- visit(EventDefinition) - Method in class org.protempa.AbstractPropositionDefinitionCheckedVisitor
-
Processes event definitions.
- visit(ConstantDefinition) - Method in class org.protempa.AbstractPropositionDefinitionCheckedVisitor
-
Processes constant definitions.
- visit(HighLevelAbstractionDefinition) - Method in class org.protempa.AbstractPropositionDefinitionCheckedVisitor
-
Processes high-level abstraction definitions.
- visit(LowLevelAbstractionDefinition) - Method in class org.protempa.AbstractPropositionDefinitionCheckedVisitor
-
Processes low-level abstraction definitions.
- visit(CompoundLowLevelAbstractionDefinition) - Method in class org.protempa.AbstractPropositionDefinitionCheckedVisitor
-
Processes compound low-level abstraction definitions.
- visit(PrimitiveParameterDefinition) - Method in class org.protempa.AbstractPropositionDefinitionCheckedVisitor
-
Processes primitive parameter definitions.
- visit(SliceDefinition) - Method in class org.protempa.AbstractPropositionDefinitionCheckedVisitor
-
Processes slice abstraction definitions.
- visit(SequentialTemporalPatternDefinition) - Method in class org.protempa.AbstractPropositionDefinitionCheckedVisitor
-
Processes pair abstraction definitions.
- visit(Collection<? extends PropositionDefinition>) - Method in class org.protempa.AbstractPropositionDefinitionVisitor
-
Processes a collection of proposition definitions.
- visit(EventDefinition) - Method in class org.protempa.AbstractPropositionDefinitionVisitor
-
Processes event definitions.
- visit(HighLevelAbstractionDefinition) - Method in class org.protempa.AbstractPropositionDefinitionVisitor
-
Processes high-level abstraction definitions.
- visit(LowLevelAbstractionDefinition) - Method in class org.protempa.AbstractPropositionDefinitionVisitor
-
Processes low-level abstraction definitions.
- visit(CompoundLowLevelAbstractionDefinition) - Method in class org.protempa.AbstractPropositionDefinitionVisitor
-
Processes compound low-level abstraction definitions.
- visit(PrimitiveParameterDefinition) - Method in class org.protempa.AbstractPropositionDefinitionVisitor
-
Processes primitive parameter definitions.
- visit(SliceDefinition) - Method in class org.protempa.AbstractPropositionDefinitionVisitor
-
Processes slice abstraction definitions.
- visit(ConstantDefinition) - Method in class org.protempa.AbstractPropositionDefinitionVisitor
-
Processes constant definitions.
- visit(SequentialTemporalPatternDefinition) - Method in class org.protempa.AbstractPropositionDefinitionVisitor
-
Processes constant definitions.
- visit(PositionFilter) - Method in class org.protempa.backend.dsb.filter.AbstractFilterVisitor
-
- visit(ValueFilter) - Method in class org.protempa.backend.dsb.filter.AbstractFilterVisitor
-
- visit(PropertyValueFilter) - Method in class org.protempa.backend.dsb.filter.AbstractFilterVisitor
-
- visit(PropertyValueFilter) - Method in interface org.protempa.backend.dsb.filter.FilterVisitor
-
- visit(PositionFilter) - Method in interface org.protempa.backend.dsb.filter.FilterVisitor
-
- visit(ValueFilter) - Method in interface org.protempa.backend.dsb.filter.FilterVisitor
-
- visit(AbstractParameter) - Method in class org.protempa.proposition.stats.AbstractKaplanMeyer
-
- visit(Event) - Method in class org.protempa.proposition.stats.AbstractKaplanMeyer
-
- visit(PrimitiveParameter) - Method in class org.protempa.proposition.stats.AbstractKaplanMeyer
-
- visit(NominalValue) - Method in interface org.protempa.proposition.value.ValueVisitor
-
Processes a nominal value.
- visit(OrdinalValue) - Method in interface org.protempa.proposition.value.ValueVisitor
-
Processes an ordinal value.
- visit(BooleanValue) - Method in interface org.protempa.proposition.value.ValueVisitor
-
Processes a boolean value.
- visit(ValueList<? extends Value>) - Method in interface org.protempa.proposition.value.ValueVisitor
-
Processes a list of values.
- visit(NumberValue) - Method in interface org.protempa.proposition.value.ValueVisitor
-
Processes a number value.
- visit(InequalityNumberValue) - Method in interface org.protempa.proposition.value.ValueVisitor
-
Processes an inequality number value.
- visit(DateValue) - Method in interface org.protempa.proposition.value.ValueVisitor
-
Processes a date value.
- visit(Map<String, List<Proposition>>) - Method in class org.protempa.proposition.visitor.AbstractPropositionCheckedVisitor
-
- visit(Collection<? extends Proposition>) - Method in class org.protempa.proposition.visitor.AbstractPropositionCheckedVisitor
-
- visit(PrimitiveParameter) - Method in class org.protempa.proposition.visitor.AbstractPropositionCheckedVisitor
-
- visit(Event) - Method in class org.protempa.proposition.visitor.AbstractPropositionCheckedVisitor
-
- visit(AbstractParameter) - Method in class org.protempa.proposition.visitor.AbstractPropositionCheckedVisitor
-
- visit(Constant) - Method in class org.protempa.proposition.visitor.AbstractPropositionCheckedVisitor
-
- visit(Context) - Method in class org.protempa.proposition.visitor.AbstractPropositionCheckedVisitor
-
- visit(Map<String, List<Proposition>>) - Method in class org.protempa.proposition.visitor.AbstractPropositionVisitor
-
- visit(Collection<? extends Proposition>) - Method in class org.protempa.proposition.visitor.AbstractPropositionVisitor
-
- visit(AbstractParameter) - Method in class org.protempa.proposition.visitor.AbstractPropositionVisitor
-
Processes abstract parameters.
- visit(Event) - Method in class org.protempa.proposition.visitor.AbstractPropositionVisitor
-
Processes events.
- visit(PrimitiveParameter) - Method in class org.protempa.proposition.visitor.AbstractPropositionVisitor
-
Processes primitive parameters.
- visit(Constant) - Method in class org.protempa.proposition.visitor.AbstractPropositionVisitor
-
Processes constants.
- visit(Context) - Method in class org.protempa.proposition.visitor.AbstractPropositionVisitor
-
Processes contexts.
- visit(Map<String, List<Proposition>>) - Method in interface org.protempa.proposition.visitor.PropositionCheckedVisitor
-
Processes results from a PROTEMPA finder method.
- visit(Collection<? extends Proposition>) - Method in interface org.protempa.proposition.visitor.PropositionCheckedVisitor
-
Processes a collection of propositions.
- visit(PrimitiveParameter) - Method in interface org.protempa.proposition.visitor.PropositionCheckedVisitor
-
Processes a primitive parameter.
- visit(Event) - Method in interface org.protempa.proposition.visitor.PropositionCheckedVisitor
-
Processes an event.
- visit(AbstractParameter) - Method in interface org.protempa.proposition.visitor.PropositionCheckedVisitor
-
Processes an abstract parameter.
- visit(Constant) - Method in interface org.protempa.proposition.visitor.PropositionCheckedVisitor
-
Processes a constant parameter.
- visit(Context) - Method in interface org.protempa.proposition.visitor.PropositionCheckedVisitor
-
Processes a context.
- visit(Map<String, List<Proposition>>) - Method in interface org.protempa.proposition.visitor.PropositionVisitor
-
Processes results from a PROTEMPA finder method.
- visit(Collection<? extends Proposition>) - Method in interface org.protempa.proposition.visitor.PropositionVisitor
-
Processes a collection of propositions.
- visit(PrimitiveParameter) - Method in interface org.protempa.proposition.visitor.PropositionVisitor
-
Processes a primitive parameter.
- visit(Event) - Method in interface org.protempa.proposition.visitor.PropositionVisitor
-
Processes an event.
- visit(AbstractParameter) - Method in interface org.protempa.proposition.visitor.PropositionVisitor
-
Processes an abstract parameter.
- visit(Constant) - Method in interface org.protempa.proposition.visitor.PropositionVisitor
-
Processes a constant.
- visit(Context) - Method in interface org.protempa.proposition.visitor.PropositionVisitor
-
Processes a context.
- visit(Collection<PropositionDefinition>) - Method in interface org.protempa.PropositionDefinitionCheckedVisitor
-
Process a collection of proposition definitions.
- visit(LowLevelAbstractionDefinition) - Method in interface org.protempa.PropositionDefinitionCheckedVisitor
-
Process a low-level abstraction definition
- visit(CompoundLowLevelAbstractionDefinition) - Method in interface org.protempa.PropositionDefinitionCheckedVisitor
-
Process a compound low-level abstraction definition
- visit(HighLevelAbstractionDefinition) - Method in interface org.protempa.PropositionDefinitionCheckedVisitor
-
Process a high-level abstraction definition
- visit(SliceDefinition) - Method in interface org.protempa.PropositionDefinitionCheckedVisitor
-
Process a slice definition.
- visit(EventDefinition) - Method in interface org.protempa.PropositionDefinitionCheckedVisitor
-
Process an event definition.
- visit(PrimitiveParameterDefinition) - Method in interface org.protempa.PropositionDefinitionCheckedVisitor
-
Process a primitive parameter definition.
- visit(ConstantDefinition) - Method in interface org.protempa.PropositionDefinitionCheckedVisitor
-
Process a constant definition.
- visit(SequentialTemporalPatternDefinition) - Method in interface org.protempa.PropositionDefinitionCheckedVisitor
-
Process a pair abstraction definition.
- visit(ContextDefinition) - Method in interface org.protempa.PropositionDefinitionCheckedVisitor
-
Process a context definition.
- visit(Collection<? extends PropositionDefinition>) - Method in interface org.protempa.PropositionDefinitionVisitor
-
Process a collection of proposition definitions.
- visit(LowLevelAbstractionDefinition) - Method in interface org.protempa.PropositionDefinitionVisitor
-
Process a low-level abstraction definition
- visit(CompoundLowLevelAbstractionDefinition) - Method in interface org.protempa.PropositionDefinitionVisitor
-
Process a compound low-level abstraction definition
- visit(HighLevelAbstractionDefinition) - Method in interface org.protempa.PropositionDefinitionVisitor
-
Process a high-level abstraction definition
- visit(SliceDefinition) - Method in interface org.protempa.PropositionDefinitionVisitor
-
Process a slice definition.
- visit(EventDefinition) - Method in interface org.protempa.PropositionDefinitionVisitor
-
Process an event definition.
- visit(PrimitiveParameterDefinition) - Method in interface org.protempa.PropositionDefinitionVisitor
-
Process a primitive parameter definition.
- visit(ConstantDefinition) - Method in interface org.protempa.PropositionDefinitionVisitor
-
Process a constant definition.
- visit(SequentialTemporalPatternDefinition) - Method in interface org.protempa.PropositionDefinitionVisitor
-
Process a pair definition.
- visit(ContextDefinition) - Method in interface org.protempa.PropositionDefinitionVisitor
-
Process a temporal context.
- visitAll(Filter) - Method in class org.protempa.backend.dsb.filter.AbstractFilterVisitor
-
- visitAll(Filter) - Method in interface org.protempa.backend.dsb.filter.FilterVisitor
-