org.genesys2.gringlobal.taxonomy.component

Class TaxonomyReader

java.lang.Object

org.genesys2.gringlobal.taxonomy.component.TaxonomyReader

public class TaxonomyReader
extends Object

The CSV file reader for GRIN-Global taxonomy.

Constructor Summary

Constructors

Constructor and Description
TaxonomyReader()

Method Summary

Modifier and Type	Method and Description
static com.opencsv.CSVReader	openCsvReader(Reader reader, int startAt) Returns a CSVReader that properly handles GRIN-Global taxonomy files in CSV format.
static Date	toDate(String string) Convert a string in agreed format (yyyy-MM-dd HH:mm:ss) to Date.
static GenusRow	toGenus(String[] row) Convert row to GenusRow.
static SpeciesRow	toSpecies(String[] row) Convert row to SpeciesRow.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TaxonomyReader

public TaxonomyReader()

Method Detail

openCsvReader

public static com.opencsv.CSVReader openCsvReader(Reader reader,
                                                  int startAt)

Returns a CSVReader that properly handles GRIN-Global taxonomy files in CSV format. It converts \N to null in each row.

Parameters:

reader - the reader

startAt - the start at

Returns:

the CSV reader

toGenus

public static GenusRow toGenus(String[] row)
                        throws ParseException

Convert row to GenusRow.

Parameters:

row - in the right CSV order

Returns:

the genus row

Throws:

ParseException - if date cannot be parsed

toSpecies

public static SpeciesRow toSpecies(String[] row)
                            throws ParseException

Convert row to SpeciesRow.

Parameters:

row - in the right CSV order

Returns:

the species row

Throws:

ParseException - if date cannot be parsed

toDate

public static Date toDate(String string)
                   throws ParseException

Convert a string in agreed format (yyyy-MM-dd HH:mm:ss) to Date.

Parameters:

string - the string

Returns:

the date

Throws:

ParseException - the parse exception