Package gorsat.external.plink

Class PlinkArguments

java.lang.Object
gorsat.external.plink.PlinkArguments
public class PlinkArguments
extends java.lang.Object
This class stores the phenotype file for plink vcf input header generation Also the argument to the plink external process

  • Constructor Summary

    Constructors 
    Constructor Description
    PlinkArguments​(java.lang.String pheno, java.lang.String covar, boolean firth, boolean hideCovar, boolean dom, boolean rec, boolean vs, boolean qn, boolean cvs, float hweThreshold, float genoThreshold, float mafThreshold)  

  • Method Summary

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Constructor Details

    • PlinkArguments

      public PlinkArguments​(java.lang.String pheno, java.lang.String covar, boolean firth, boolean hideCovar, boolean dom, boolean rec, boolean vs, boolean qn, boolean cvs, float hweThreshold, float genoThreshold, float mafThreshold)