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A

AbstractDialogFactory<T extends Dialog> - Class in org.gorpipe.querydialogs.factory

A factory responsible for building Dialogs from a supplied YAML file.

AbstractDialogFactory(FileReader, QueryEvaluator) - Constructor for class org.gorpipe.querydialogs.factory.AbstractDialogFactory

Constructs a factory with no registered argument builders

AbstractListBean - Class in org.gorpipe.querydialogs

Implements ListModel event listening funtionality

AbstractListBean() - Constructor for class org.gorpipe.querydialogs.AbstractListBean

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Calc_commandContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Calc_expression_listContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Calc_expressionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Column_listContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Column_nameContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Column_numberContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Column_rangeContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Column_refContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Column_rename_ruleContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Column_wildcardContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Create_statementContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Def_macroContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.FactorContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.FilenameContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Function_exprContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Function_nameContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Generic_commandContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Gornor_expressionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Hide_commandContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.In_expressionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Input_sourceContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Macro_nameContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Macro_valueContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Nested_queryContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Not_rel_exprContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.NumberContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Option_valueContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Optional_power_factorContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.OptionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Paren_exprContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Paren_rel_exprContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Power_factorContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Predicate_factorContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.PredicateContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Query_expressionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Rel_exprContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Rel_termContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Rename_commandContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Replace_commandContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Select_commandContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Signed_factorContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.String_literal_listContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.String_literalContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.TermContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.ValueContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.VariableContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relation_nameContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relationContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Where_commandContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.XfactorContext

actionPerformed(ActionEvent) - Method in class org.gorpipe.jessica.MainWindow

add(double) - Method in class gorsat.parser.CalcLambdaBoolean

add(double) - Method in class gorsat.parser.CalcLambdaDouble

add(double) - Method in class gorsat.parser.CalcLambdaDoubleConstant

add(double) - Method in class gorsat.parser.CalcLambdaInteger

add(double) - Method in class gorsat.parser.CalcLambdaIntegerConstant

add(double) - Method in class gorsat.parser.CalcLambdaLong

add(double) - Method in class gorsat.parser.CalcLambdaLongConstant

add(double) - Method in class gorsat.parser.CalcLambdaString

add(double) - Method in class gorsat.parser.CalcLambdaStringConstant

add(double) - Method in class gorsat.parser.CalcLambdaVariable

add(int) - Method in class gorsat.parser.CalcLambdaBoolean

add(int) - Method in class gorsat.parser.CalcLambdaDouble

add(int) - Method in class gorsat.parser.CalcLambdaDoubleConstant

add(int) - Method in class gorsat.parser.CalcLambdaInteger

add(int) - Method in class gorsat.parser.CalcLambdaIntegerConstant

add(int) - Method in class gorsat.parser.CalcLambdaLong

add(int) - Method in class gorsat.parser.CalcLambdaLongConstant

add(int) - Method in class gorsat.parser.CalcLambdaString

add(int) - Method in class gorsat.parser.CalcLambdaStringConstant

add(int) - Method in class gorsat.parser.CalcLambdaVariable

add(long) - Method in class gorsat.parser.CalcLambdaBoolean

add(long) - Method in class gorsat.parser.CalcLambdaDouble

add(long) - Method in class gorsat.parser.CalcLambdaDoubleConstant

add(long) - Method in class gorsat.parser.CalcLambdaInteger

add(long) - Method in class gorsat.parser.CalcLambdaIntegerConstant

add(long) - Method in class gorsat.parser.CalcLambdaLong

add(long) - Method in class gorsat.parser.CalcLambdaLongConstant

add(long) - Method in class gorsat.parser.CalcLambdaString

add(long) - Method in class gorsat.parser.CalcLambdaStringConstant

add(long) - Method in class gorsat.parser.CalcLambdaVariable

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaBoolean

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaDouble

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaDoubleConstant

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaInteger

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaIntegerConstant

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaLong

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaLongConstant

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaString

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaStringConstant

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaVariable

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaBoolean

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaDouble

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaDoubleConstant

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaInteger

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaIntegerConstant

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaLong

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaLongConstant

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaString

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaStringConstant

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaVariable

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaBoolean

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaDouble

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaDoubleConstant

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaInteger

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaIntegerConstant

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaLong

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaLongConstant

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaString

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaStringConstant

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaVariable

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaBoolean

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaDouble

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaDoubleConstant

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaInteger

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaIntegerConstant

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaLong

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaLongConstant

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaString

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaStringConstant

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaVariable

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaBoolean

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaDouble

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaDoubleConstant

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaInteger

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaIntegerConstant

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaLong

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaLongConstant

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaString

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaStringConstant

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaVariable

add(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaString

add(String) - Method in class gorsat.parser.CalcLambdaBoolean

add(String) - Method in class gorsat.parser.CalcLambdaDouble

add(String) - Method in class gorsat.parser.CalcLambdaDoubleConstant

add(String) - Method in class gorsat.parser.CalcLambdaInteger

add(String) - Method in class gorsat.parser.CalcLambdaIntegerConstant

add(String) - Method in class gorsat.parser.CalcLambdaLong

add(String) - Method in class gorsat.parser.CalcLambdaLongConstant

add(String) - Method in class gorsat.parser.CalcLambdaString

add(String) - Method in class gorsat.parser.CalcLambdaStringConstant

add(String) - Method in class gorsat.parser.CalcLambdaVariable

add(Row) - Method in class gorsat.RowBuffer

addData(int, double, double, double) - Method in class gorsat.gtgen.GTGen

addData(int, int, int) - Method in class gorsat.gtgen.GTGen

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaBoolean

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDouble

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDoubleConstant

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaInteger

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaIntegerConstant

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLong

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLongConstant

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaString

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaStringConstant

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaVariable

addListDataListener(ListDataListener) - Method in class org.gorpipe.querydialogs.AbstractListBean

addMultipleOf(double[], double, double[], int, int) - Static method in class gorsat.Regression.LinearAlgebra

Adds a * y to x.

addNewReportToViewer() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

addPropertyChangeListener(PropertyChangeListener) - Method in class org.gorpipe.querydialogs.BasicBean

Adds a PropertyChangeListener to the listener list.

addPropertyChangeListener(String, PropertyChangeListener) - Method in class org.gorpipe.querydialogs.BasicBean

Adds a PropertyChangeListener to the listener list for a specific property.

addReportToViewer(PerspectiveDialog) - Method in interface org.gorpipe.querydialogs.factory.ReportViewer

addSpecialVars() - Method in class gorsat.parser.CalcCompiler

addVariant(String) - Method in class org.gorpipe.gor.gava.VariantAssociation

Add a variant.

AdjustedGORLine - Class in gorsat.external.plink

AdjustedGORLine(String) - Constructor for class gorsat.external.plink.AdjustedGORLine

AdjustedGORLineIterator - Class in gorsat.external.plink

AdjustedGORLineIterator(Stream<Row>) - Constructor for class gorsat.external.plink.AdjustedGORLineIterator

advancedArgumentsVisible() - Method in class org.gorpipe.querydialogs.Dialog

aliases - Variable in class org.gorpipe.gor.cli.manager.FilterOptions

aliasFile - Variable in class org.gorpipe.gor.cli.render.RenderOptions

allowedValues - Variable in class org.gorpipe.querydialogs.Argument

allowError() - Method in class gorsat.process.GorJavaUtilities.CmdParams

AND - Static variable in class org.gorpipe.gor.GorScriptLexer

AND - Static variable in class org.gorpipe.gor.GorScriptParser

AND() - Method in class org.gorpipe.gor.GorScriptParser.Rel_termContext

AND(int) - Method in class org.gorpipe.gor.GorScriptParser.Rel_termContext

apply(Row) - Method in class org.gorpipe.gor.function.GorRowMapFunction

apply(Row) - Method in class org.gorpipe.gor.function.GorRowQueryFunction

apply(Row, Row) - Method in class org.gorpipe.gor.function.GorRowInferFunction

apply(T) - Method in class org.gorpipe.gor.function.GorRowFilterFunction

argument() - Method in class org.gorpipe.gor.GorScriptParser

argument() - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

argument(int) - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

Argument - Class in org.gorpipe.querydialogs

A base class for all arguments.

Argument(Argument) - Constructor for class org.gorpipe.querydialogs.Argument

Constructor that copies the input argument.

Argument(ArgumentType, ArgumentDescription, Boolean, Object, List<? extends Object>, URI, List<String>, Boolean, Integer) - Constructor for class org.gorpipe.querydialogs.Argument

Base constructor for all arguments.

ArgumentBuilder - Class in org.gorpipe.querydialogs.factory

Base class for all argument builders.

ArgumentBuilder(FileReader) - Constructor for class org.gorpipe.querydialogs.factory.ArgumentBuilder

ArgumentContent - Class in org.gorpipe.querydialogs.factory

Class for perspective dialog argument content.

ArgumentContent(String) - Constructor for class org.gorpipe.querydialogs.factory.ArgumentContent

Constructor.

ArgumentContent.Format - Enum in org.gorpipe.querydialogs.factory

Definition of argument content formats.

ArgumentContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.ArgumentContext

ArgumentDescription - Class in org.gorpipe.querydialogs

Argument description class.

ArgumentDescription(String, String, String, String) - Constructor for class org.gorpipe.querydialogs.ArgumentDescription

argumentMap - Variable in class org.gorpipe.querydialogs.Dialog

ArgumentType - Class in org.gorpipe.querydialogs

Enumeration of argument types.

ArgumentType(int, String) - Constructor for class org.gorpipe.querydialogs.ArgumentType

ArgumentType(int, String, Integer) - Constructor for class org.gorpipe.querydialogs.ArgumentType

asList(String) - Method in class gorsat.process.SessionBasedQueryEvaluator

asValue(String) - Method in class gorsat.process.SessionBasedQueryEvaluator

attributes - Variable in class org.gorpipe.querydialogs.Dialog

available() - Method in class gorsat.RowBuffer

B

BaseStreamIterator - Class in gorsat.process

Iterator that is based on stream coming from the Supplier provided.

BaseStreamIterator(Supplier<Stream<String>>) - Constructor for class gorsat.process.BaseStreamIterator

BashCmd - Class in org.gorpipe.gorshell

BashCmd() - Constructor for class org.gorpipe.gorshell.BashCmd

BasicBean - Class in org.gorpipe.querydialogs

Bean that provides basic support for Java beans.

BasicBean() - Constructor for class org.gorpipe.querydialogs.BasicBean

BATCHBUFFERFILLTIME_KEY - Static variable in interface gorsat.BatchedReadSourceConfig

BatchedPipeStepIteratorAdaptor - Class in gorsat

Created by sigmar on 05/05/2017.

BatchedPipeStepIteratorAdaptor(Iterator<? extends Row>, Analysis, boolean, String, BatchedReadSourceConfig) - Constructor for class gorsat.BatchedPipeStepIteratorAdaptor

BatchedPipeStepIteratorAdaptor(Iterator<? extends Row>, Analysis, String, BatchedReadSourceConfig) - Constructor for class gorsat.BatchedPipeStepIteratorAdaptor

BatchedReadSource - Class in gorsat

A wrapper rowSource reading the child rowSource in a thread into a buffer and offering to the main thread in batches

BatchedReadSource(Iterator<? extends Row>, BatchedReadSourceConfig, String, GorMonitor) - Constructor for class gorsat.BatchedReadSource

BatchedReadSource(RowSource, BatchedReadSourceConfig) - Constructor for class gorsat.BatchedReadSource

BatchedReadSourceConfig - Interface in gorsat

Created by sigmar on 26/04/2017.

BATCHEDREADSOURCETIMETRIGGERMS_KEY - Static variable in interface gorsat.BatchedReadSourceConfig

BATCHLOGINTERVALMS_KEY - Static variable in interface gorsat.BatchedReadSourceConfig

BATCHMAXGORLINES_KEY - Static variable in interface gorsat.BatchedReadSourceConfig

BATCHOFFERTIMEOUTMS_KEY - Static variable in interface gorsat.BatchedReadSourceConfig

benjamini_hochberg(double[], double[]) - Static method in class gorsat.process.StatisticalAdjustment

Runs a Benjamini Hochberg correction on an ordered vector of p values.

benjamini_yekutieli(double[], double[]) - Static method in class gorsat.process.StatisticalAdjustment

Runs a Benjamini-Yekutieli correction on an ordered vector of p values.

beta - Variable in class gorsat.Regression.LinearRegression

beta - Variable in class gorsat.Regression.LogisticRegression

betaError - Variable in class gorsat.Regression.LinearRegression

bonferroni(double, int) - Static method in class gorsat.process.StatisticalAdjustment

bucketCreator(BucketCreator<T>) - Method in class org.gorpipe.gor.manager.BucketManager.Builder

BucketCreator<T extends org.gorpipe.gor.table.BucketableTableEntry> - Interface in org.gorpipe.gor.manager

Helper class to create bucket files from bucket descriptions.

BucketCreatorGorPipe<T extends org.gorpipe.gor.table.BucketableTableEntry> - Class in org.gorpipe.gor.manager

Helper class to create bucket file from bucket description.

BucketCreatorGorPipe() - Constructor for class org.gorpipe.gor.manager.BucketCreatorGorPipe

BucketCreatorGorPipe(int) - Constructor for class org.gorpipe.gor.manager.BucketCreatorGorPipe

bucketize() - Method in class org.gorpipe.gor.manager.BucketManager

bucketize(Path, BucketManager.BucketPackLevel, int, int, List<Path>) - Method in class org.gorpipe.gor.manager.TableManager

Bucketize the given table.

bucketize(BucketManager.BucketPackLevel, int) - Method in class org.gorpipe.gor.manager.BucketManager

bucketize(BucketManager.BucketPackLevel, int, List<Path>, boolean) - Method in class org.gorpipe.gor.manager.BucketManager

Bucketize the given table.

BucketizeCommand - Class in org.gorpipe.gor.cli.manager

BucketizeCommand() - Constructor for class org.gorpipe.gor.cli.manager.BucketizeCommand

BucketManager<T extends org.gorpipe.gor.table.BucketableTableEntry> - Class in org.gorpipe.gor.manager

BucketManager(BaseTable<T>) - Constructor for class org.gorpipe.gor.manager.BucketManager

Default constructor.

BucketManager.BucketPackLevel - Enum in org.gorpipe.gor.manager

BucketManager.Builder<T extends org.gorpipe.gor.table.BucketableTableEntry> - Class in org.gorpipe.gor.manager

bucketPackLevel - Variable in class org.gorpipe.gor.cli.manager.CommandBucketizeOptions

buckets - Variable in class org.gorpipe.gor.cli.manager.FilterOptions

bucketSize - Variable in class org.gorpipe.gor.cli.manager.CommandBucketizeOptions

bucketSize(int) - Method in class org.gorpipe.gor.manager.BucketManager.Builder

bucketSize(int) - Method in class org.gorpipe.gor.manager.TableManager.Builder

bufferedPipeStep - Variable in class org.gorpipe.gor.function.GorRowQueryFunction

build() - Method in class org.gorpipe.gor.manager.BucketManager.Builder

build() - Method in class org.gorpipe.gor.manager.TableManager.Builder

build(String, Map<String, ?>) - Method in class org.gorpipe.querydialogs.factory.builder.QueryArgumentBuilder

build(String, Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.ArgumentBuilder

Builds an arguments based on supplied attributes.

build(String, Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.builder.DateArgumentBuilder

build(String, Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.builder.FileArgumentBuilder

build(String, Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.builder.NumberArgumentBuilder

build(String, Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.builder.StringArgumentBuilder

build(String, Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.GridArgumentBuilder

buildArgument(String, Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

buildDialog(String, Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

buildDialog(String, Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialogFactory

buildDialogs(Reader, String) - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

Attempts to read and parse the given file as a YAML file and convert the resulting data structure to a list of Dialogs

buildDialogs(String) - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

buildDialogs(String) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialogFactory

buildDialogs(String, byte[]) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialogFactory

buildDialogs(String, String) - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

buildDialogs(String, String) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialogFactory

buildDialogs(Path) - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

buildDialogs(Path) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialogFactory

builder(Path) - Static method in class gorsat.parquet.GorParquetWriter

C

CacheCommand - Class in org.gorpipe.gor.cli.cache

CacheCommand() - Constructor for class org.gorpipe.gor.cli.cache.CacheCommand

CALC - Static variable in class org.gorpipe.gor.GorScriptLexer

CALC - Static variable in class org.gorpipe.gor.GorScriptParser

CALC() - Method in class org.gorpipe.gor.GorScriptParser.Calc_commandContext

calc_command() - Method in class org.gorpipe.gor.GorScriptParser

calc_command() - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

Calc_commandContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Calc_commandContext

calc_expression() - Method in class org.gorpipe.gor.GorScriptParser

calc_expression_list() - Method in class org.gorpipe.gor.GorScriptParser.Calc_commandContext

calc_expression_list() - Method in class org.gorpipe.gor.GorScriptParser

calc_expression_list() - Method in class org.gorpipe.gor.GorScriptParser.Replace_commandContext

Calc_expression_listContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Calc_expression_listContext

Calc_expressionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Calc_expressionContext

CalcCompiler - Class in gorsat.parser

CalcCompiler implements an Antlr parse tree visitor, starting on an expression node.

CalcCompiler() - Constructor for class gorsat.parser.CalcCompiler

CalcCompiler(ParseArith) - Constructor for class gorsat.parser.CalcCompiler

calcInterpolatedQuery() - Method in class org.gorpipe.querydialogs.Dialog

CalcLambdaBoolean - Class in gorsat.parser

CalcLambdaBoolean(CvpBooleanLambda) - Constructor for class gorsat.parser.CalcLambdaBoolean

CalcLambdaDouble - Class in gorsat.parser

CalcLambdaDouble(CvpDoubleLambda) - Constructor for class gorsat.parser.CalcLambdaDouble

CalcLambdaDoubleConstant - Class in gorsat.parser

CalcLambdaInteger - Class in gorsat.parser

CalcLambdaInteger(CvpIntegerLambda) - Constructor for class gorsat.parser.CalcLambdaInteger

CalcLambdaIntegerConstant - Class in gorsat.parser

CalcLambdaLong - Class in gorsat.parser

CalcLambdaLong(CvpLongLambda) - Constructor for class gorsat.parser.CalcLambdaLong

CalcLambdaLongConstant - Class in gorsat.parser

CalcLambdaNumeric - Class in gorsat.parser

CalcLambdaNumeric() - Constructor for class gorsat.parser.CalcLambdaNumeric

CalcLambdaString - Class in gorsat.parser

CalcLambdaString(CvpStringLambda) - Constructor for class gorsat.parser.CalcLambdaString

CalcLambdaStringConstant - Class in gorsat.parser

CalcLambdaStringConstant(String) - Constructor for class gorsat.parser.CalcLambdaStringConstant

CalcLambdaVariable - Class in gorsat.parser

CalcLambdaVariable(int, String) - Constructor for class gorsat.parser.CalcLambdaVariable

calcType - Variable in class org.gorpipe.gor.function.GorRowMapFunction

calculateValues() - Method in class org.gorpipe.gor.gava.VariantAssociation

Calculate the p-value and other values for the current genetic feature.

calcVariantLogLikelihood(VariantCounts, int[]) - Method in class org.gorpipe.gor.gava.GavaLogLikelihood

Calculate the log-likelihood for a single variant (using the regular inheritance model).

call() - Method in class gorsat.external.plink.PlinkAdjustment

casePenetrance - Variable in class org.gorpipe.gor.gava.GavaLogLikelihood

Case penetrance (0 for no locus hetreogeneity, -1 for no constraint).

category - Variable in class org.gorpipe.querydialogs.factory.PerspectiveDialogDisplayParams

Category name.

CdCmd - Class in org.gorpipe.gorshell

CdCmd() - Constructor for class org.gorpipe.gorshell.CdCmd

changedUpdate(DocumentEvent) - Method in class org.gorpipe.jessica.MainWindow

channelNames - Static variable in class org.gorpipe.gor.GorScriptLexer

characteristics() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

ChartDataType - Enum in org.gorpipe.querydialogs

CHECK_ITEMS - Static variable in class org.gorpipe.querydialogs.ArgumentType

CHECK_ITEMS_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

checkAllowed(Object) - Method in class org.gorpipe.querydialogs.Argument

checkAllowed(Object) - Method in class org.gorpipe.querydialogs.argument.QueryArgument

checkBasicRules(byte[], byte[], byte[]) - Method in class org.gorpipe.gor.haplotype.GBasicRulesCalculator

Check basic rules (inhertance error and phase) at an single autosomal locus for a child in a triad.

checkIfLongRunningQuery() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Determine whether the query should be run as a long query which implies that the results of the query will not be streamed to the SM user but instead the results are saved to a directory of the user´s choice.

checkNested(String, GorSession, StringBuilder) - Static method in class gorsat.process.ProcessRowSource

choleskyFactorize(double[][], int) - Static method in class gorsat.Regression.LinearAlgebra

Decomposes the matrix to A = UU^T where U is upper triangular.

cleanBucketFiles(TableLock, boolean) - Method in class org.gorpipe.gor.manager.BucketManager

Cleans up bucketFiles that are not in use and have not been accessed for a given period of time.

clear() - Method in class gorsat.RowBuffer

clear() - Method in class org.gorpipe.gor.function.ListRowAdaptor

clearScript() - Method in class org.gorpipe.gorshell.GorShell

clone() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

close() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

close() - Method in class gorsat.BatchedReadSource

close() - Method in class gorsat.external.plink.AdjustedGORLineIterator

close() - Method in class gorsat.external.plink.GORLine

close() - Method in class gorsat.process.BaseStreamIterator

close() - Method in class gorsat.process.NordIterator

close() - Method in class gorsat.process.ProcessIteratorAdaptor

close() - Method in class gorsat.process.ProcessRowSource

close() - Method in class org.gorpipe.gor.clients.LocalFileCacheClient

close() - Method in class org.gorpipe.gor.function.GorRowQueryFunction

CLOSE_BRACE - Static variable in class org.gorpipe.gor.GorScriptLexer

CLOSE_BRACE - Static variable in class org.gorpipe.gor.GorScriptParser

CLOSE_PAREN - Static variable in class org.gorpipe.gor.GorScriptLexer

CLOSE_PAREN - Static variable in class org.gorpipe.gor.GorScriptParser

CLOSE_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

CLOSE_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

CLOSE_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

CLOSE_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Paren_exprContext

CLOSE_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Paren_rel_exprContext

CLOSE_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.String_literal_listContext

closeTemplateSource(Object) - Method in class org.gorpipe.querydialogs.templating.NetworkTemplateLoader

column_list() - Method in class org.gorpipe.gor.GorScriptParser.Calc_commandContext

column_list() - Method in class org.gorpipe.gor.GorScriptParser

Column_listContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Column_listContext

column_name() - Method in class org.gorpipe.gor.GorScriptParser.Column_listContext

column_name() - Method in class org.gorpipe.gor.GorScriptParser

column_name() - Method in class org.gorpipe.gor.GorScriptParser.Column_refContext

column_name() - Method in class org.gorpipe.gor.GorScriptParser.Column_wildcardContext

column_name(int) - Method in class org.gorpipe.gor.GorScriptParser.Column_listContext

Column_nameContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Column_nameContext

column_number() - Method in class org.gorpipe.gor.GorScriptParser

column_number() - Method in class org.gorpipe.gor.GorScriptParser.Column_refContext

Column_numberContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Column_numberContext

column_range() - Method in class org.gorpipe.gor.GorScriptParser

column_range() - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

column_range(int) - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

Column_rangeContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Column_rangeContext

column_ref() - Method in class org.gorpipe.gor.GorScriptParser.Column_rangeContext

column_ref() - Method in class org.gorpipe.gor.GorScriptParser

column_ref() - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

column_ref(int) - Method in class org.gorpipe.gor.GorScriptParser.Column_rangeContext

column_ref(int) - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

Column_refContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Column_refContext

column_rename_rule() - Method in class org.gorpipe.gor.GorScriptParser

column_rename_rule() - Method in class org.gorpipe.gor.GorScriptParser.Rename_commandContext

Column_rename_ruleContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Column_rename_ruleContext

column_selection() - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

column_selection() - Method in class org.gorpipe.gor.GorScriptParser

column_selection() - Method in class org.gorpipe.gor.GorScriptParser.Hide_commandContext

column_selection() - Method in class org.gorpipe.gor.GorScriptParser.Rename_commandContext

column_selection() - Method in class org.gorpipe.gor.GorScriptParser.Replace_commandContext

column_selection() - Method in class org.gorpipe.gor.GorScriptParser.Select_commandContext

Column_selectionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Column_selectionContext

column_wildcard() - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

column_wildcard() - Method in class org.gorpipe.gor.GorScriptParser

column_wildcard(int) - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

Column_wildcardContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Column_wildcardContext

ColumnGroup - Class in org.gorpipe.querydialogs.factory

Holds a definition of columns that should be grouped together.

ColumnGroup(String) - Constructor for class org.gorpipe.querydialogs.factory.ColumnGroup

ColumnGroup(String, String, String) - Constructor for class org.gorpipe.querydialogs.factory.ColumnGroup

ColumnGroup(String, String, String, boolean, int) - Constructor for class org.gorpipe.querydialogs.factory.ColumnGroup

COLUMNMODEL - org.gorpipe.querydialogs.ChartDataType

columnNames - Variable in class org.gorpipe.querydialogs.factory.ColumnGroup

Names (and order) of the columns in this group.

CombinationIterator - Class in org.gorpipe.gor.gava

Iterate through all combinations (n choose k) and provide permutations representing the combinations.

CombinationIterator(int, int) - Constructor for class org.gorpipe.gor.gava.CombinationIterator

Instantiate the iterator.

COMMA - Static variable in class org.gorpipe.gor.GorScriptLexer

COMMA - Static variable in class org.gorpipe.gor.GorScriptParser

COMMA() - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

CommandBucketizeOptions - Class in org.gorpipe.gor.cli.manager

CommandBucketizeOptions() - Constructor for class org.gorpipe.gor.cli.manager.CommandBucketizeOptions

commandCached(String, String) - Method in class org.gorpipe.gor.RequestStats

commandCreated(String, String, String, String) - Method in class org.gorpipe.gor.RequestStats

commandEnded(String) - Method in class org.gorpipe.gor.RequestStats

Commands - Class in org.gorpipe.gorshell

CommandsCommand - Class in org.gorpipe.gor.cli.info

CommandsCommand() - Constructor for class org.gorpipe.gor.cli.info.CommandsCommand

commandStarted(String, String, String, String) - Method in class org.gorpipe.gor.RequestStats

compare(TypedCalcLambda, int) - Method in class gorsat.parser.CalcLambdaBoolean

compare(TypedCalcLambda, int) - Method in class gorsat.parser.CalcLambdaNumeric

compare(TypedCalcLambda, int) - Method in class gorsat.parser.CalcLambdaString

compare(TypedCalcLambda, int) - Method in class gorsat.parser.CalcLambdaStringConstant

compare(TypedCalcLambda, int) - Method in class gorsat.parser.CalcLambdaVariable

compare_expressions() - Method in class org.gorpipe.gor.GorScriptParser

compare_expressions() - Method in class org.gorpipe.gor.GorScriptParser.PredicateContext

Compare_expressionsContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

compareTo(AdjustedGORLine) - Method in class gorsat.external.plink.AdjustedGORLine

compareTo(AdjustedGORLineIterator) - Method in class gorsat.external.plink.AdjustedGORLineIterator

compareTo(GORLine) - Method in class gorsat.external.plink.GORLine

compute(int, int, int, int) - Static method in class org.gorpipe.gor.util.GFisherExact2by2

Compute the probability for a specific tail for the table {{A, B}, {C, D}}, that is, towards large A and D and small B and C.

computeLogLikelihood(List<CollapsedCounts>, int[], boolean) - Method in class org.gorpipe.gor.gava.DominantLogLikelihood

computeLogLikelihood(List<CollapsedCounts>, int[], boolean) - Method in class org.gorpipe.gor.gava.GavaLogLikelihood

Compute the log-likelihood ratio for a feature.

computeLogLikelihood(List<CollapsedCounts>, int[], boolean) - Method in class org.gorpipe.gor.gava.RecessiveLogLikelihood

computeLogLikelihood(List<CollapsedCounts>, int[], boolean) - Method in class org.gorpipe.gor.gava.RegularLogLikelihood

computeLogLikelihoodChiSquared(int, int, int, int) - Static method in class org.gorpipe.gor.util.GChiSquared2by2

Compute the likelihood ratio chi-squared value for the 2-by-2 table [o11 o12] [o21 o22].

computeOneTailed(int, int, int, int) - Static method in class org.gorpipe.gor.util.GFisherExact2by2

Compute the one-tailed probability for the table {{A, B}, {C, D}}.

computePearsonChiSquared(int, int, int, int) - Static method in class org.gorpipe.gor.util.GChiSquared2by2

Compute the Pearson's chi-squared value for the 2-by-2 table [o11 o12] [o21 o22].

computeTestStats() - Method in class gorsat.Regression.LogisticRegression

computeTwoTailed(int, int, int, int) - Static method in class org.gorpipe.gor.util.GFisherExact2by2

Compute the two-tailed probability for the table {{A, B}, {C, D}}.

configFile - Variable in class org.gorpipe.gorshell.GorShell.Settings

ConfigFile() - Constructor for class org.gorpipe.gorshell.SetCmd.ConfigFile

CONNECTIONRETRIES_KEY - Static variable in interface gorsat.BatchedReadSourceConfig

CONNECTIONRETRYEXPONENT_KEY - Static variable in interface gorsat.BatchedReadSourceConfig

CONNECTIONRETRYTIME_KEY - Static variable in interface gorsat.BatchedReadSourceConfig

CONSOLIDATE - org.gorpipe.gor.manager.BucketManager.BucketPackLevel

Constant - Interface in gorsat.parser

contains(String) - Method in class org.gorpipe.querydialogs.factory.ColumnGroup

containsEndRow() - Method in class gorsat.RowBuffer

controlPenetrance - Variable in class org.gorpipe.gor.gava.GavaLogLikelihood

Control penetrance (0 for complete penetrance, -1 for no constraint).

copyArgument() - Method in class org.gorpipe.querydialogs.Argument

Make a copy of the argument.

copyArgument() - Method in class org.gorpipe.querydialogs.argument.DateArgument

copyArgument() - Method in class org.gorpipe.querydialogs.argument.FileArgument

copyArgument() - Method in class org.gorpipe.querydialogs.argument.NumberArgument

copyArgument() - Method in class org.gorpipe.querydialogs.argument.QueryArgument

copyArgument() - Method in class org.gorpipe.querydialogs.argument.StringArgument

copyArgument() - Method in class org.gorpipe.querydialogs.GridArgument

copyArguments() - Method in class org.gorpipe.querydialogs.Dialog

create() - Method in class gorsat.process.GenericRunnerFactory

create() - Method in class gorsat.process.GenericSessionFactory

create() - Method in class org.gorpipe.gorshell.GorShellSessionFactory

create(FileReader, QueryEvaluator) - Static method in class org.gorpipe.querydialogs.factory.PerspectiveDialogFactory

Create a new perspective dialog factory.

CREATE - Static variable in class org.gorpipe.gor.GorScriptLexer

CREATE - Static variable in class org.gorpipe.gor.GorScriptParser

CREATE() - Method in class org.gorpipe.gor.GorScriptParser.Create_statementContext

create_statement() - Method in class org.gorpipe.gor.GorScriptParser

create_statement() - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

create_statement(int) - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

Create_statementContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Create_statementContext

createBuckets(BaseTable<T>, Map<Path, List<T>>, Path) - Method in interface org.gorpipe.gor.manager.BucketCreator

Create bucket files.

createBuckets(BaseTable<T>, Map<Path, List<T>>, Path) - Method in class org.gorpipe.gor.manager.BucketCreatorGorPipe

createChromoLookup() - Static method in class gorsat.process.ProcessRowSource

CreateCmd - Class in org.gorpipe.gorshell

CreateCmd() - Constructor for class org.gorpipe.gorshell.CreateCmd

createdFiles - Variable in class org.gorpipe.gor.RequestStats

createMapString(Map<String, String>) - Static method in class gorsat.process.GorJavaUtilities

createStatements - Variable in class org.gorpipe.gorshell.GorShell.Settings

CvpBooleanLambda - Interface in gorsat.parser

CvpDoubleLambda - Interface in gorsat.parser

CvpIntegerLambda - Interface in gorsat.parser

CvpLongLambda - Interface in gorsat.parser

CvpStringLambda - Interface in gorsat.parser

D

DATA_PREFIX - Static variable in class gorsat.process.NorStreamIterator

DATE - Static variable in class org.gorpipe.querydialogs.ArgumentType

DATE_FORMAT - Static variable in class org.gorpipe.querydialogs.argument.DateArgument

The date format used.

DATE_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

DateArgument - Class in org.gorpipe.querydialogs.argument

Represents an argument that expects a date value.

DateArgument(DateArgument) - Constructor for class org.gorpipe.querydialogs.argument.DateArgument

Constructor that copies the input date argument.

DateArgument(ArgumentDescription, Boolean, Object, List<? extends Object>, List<String>, Boolean, Integer) - Constructor for class org.gorpipe.querydialogs.argument.DateArgument

Constructor.

DateArgumentBuilder - Class in org.gorpipe.querydialogs.factory.builder

Responsible for building date arguments.

DateArgumentBuilder(FileReader) - Constructor for class org.gorpipe.querydialogs.factory.builder.DateArgumentBuilder

DEF - Static variable in class org.gorpipe.gor.GorScriptLexer

DEF - Static variable in class org.gorpipe.gor.GorScriptParser

DEF() - Method in class org.gorpipe.gor.GorScriptParser.Def_macroContext

def_macro() - Method in class org.gorpipe.gor.GorScriptParser

def_macro() - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

def_macro(int) - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

Def_macroContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Def_macroContext

DEFAULT_BUCKET_PACK_LEVEL - Static variable in class org.gorpipe.gor.manager.BucketManager

DEFAULT_BUCKET_SIZE - Static variable in class org.gorpipe.gor.manager.BucketManager

DEFAULT_FORMAT - Static variable in class org.gorpipe.querydialogs.util.ValueFormatter

DEFAULT_LOCK_TIMEOUT - Static variable in class org.gorpipe.gor.manager.BucketManager

DEFAULT_LOCK_TIMEOUT - Static variable in class org.gorpipe.gor.manager.TableManager

DEFAULT_LOCK_TYPE - Static variable in class org.gorpipe.gor.manager.BucketManager

DEFAULT_LOCK_TYPE - Static variable in class org.gorpipe.gor.manager.TableManager

DEFAULT_MAX_BUCKET_COUNT - Static variable in class org.gorpipe.gor.manager.BucketManager

DEFAULT_MIN_BUCKET_SIZE - Static variable in class org.gorpipe.gor.manager.BucketManager

DEFAULT_NUMBER_WORKERS - Static variable in class org.gorpipe.gor.manager.BucketCreatorGorPipe

defaultDisplayWidth - Variable in class org.gorpipe.querydialogs.ArgumentType

defaultValue - Variable in class org.gorpipe.querydialogs.Argument

DefCmd - Class in org.gorpipe.gorshell

DefCmd() - Constructor for class org.gorpipe.gorshell.DefCmd

DEFERRED_LIST - Static variable in class org.gorpipe.querydialogs.Argument

deferredValuesLoaded() - Method in class org.gorpipe.querydialogs.Argument

defStatements - Variable in class org.gorpipe.gorshell.GorShell.Settings

delete(Path, BaseTable.TableFilter) - Method in class org.gorpipe.gor.manager.TableManager

Delete entries from the table.

delete(Path, BucketableTableEntry...) - Method in class org.gorpipe.gor.manager.TableManager

Delete entries from the table.

DeleteBucketCommand - Class in org.gorpipe.gor.cli.manager

DeleteBucketCommand() - Constructor for class org.gorpipe.gor.cli.manager.DeleteBucketCommand

deleteBuckets(Path...) - Method in class org.gorpipe.gor.manager.BucketManager

Delete the given bucket.

deleteBuckets(Path, Path...) - Method in class org.gorpipe.gor.manager.TableManager

Delete the given buckets.

deleteBuckets(BaseTable, Path...) - Method in class org.gorpipe.gor.manager.TableManager

Delete the given buckets.

DeleteCommand - Class in org.gorpipe.gor.cli.manager

DeleteCommand() - Constructor for class org.gorpipe.gor.cli.manager.DeleteCommand

delta - Variable in class gorsat.Regression.LogisticRegression

detailedDescr - Variable in class org.gorpipe.querydialogs.DialogDescription

Dialog detailed description.

determineLongRunningQuery() - Method in class org.gorpipe.querydialogs.Dialog

Dialog - Class in org.gorpipe.querydialogs

A basic dialog implementation

Dialog(Map<String, ? extends Object>, FileReader, QueryEvaluator, DialogDescription, DialogType, String, String, String, String, ChartDataType, List<Argument>, String, String, String, String, String) - Constructor for class org.gorpipe.querydialogs.Dialog

DialogArgumentWrapper - Class in org.gorpipe.querydialogs.templating

A wrapper for dialog arguments.

DialogArgumentWrapper() - Constructor for class org.gorpipe.querydialogs.templating.DialogArgumentWrapper

dialogDescription - Variable in class org.gorpipe.querydialogs.Dialog

DialogDescription - Class in org.gorpipe.querydialogs

Class for describing a dialog.

DialogDescription(String, String, String, String) - Constructor for class org.gorpipe.querydialogs.DialogDescription

Constructor.

DialogType - Enum in org.gorpipe.querydialogs

The types of dialogs currently supported

DIGIT - Static variable in class org.gorpipe.gor.GorScriptLexer

DIGIT - Static variable in class org.gorpipe.gor.GorScriptParser

dim - Variable in class gorsat.Regression.LogisticRegression

displayHelp(Window) - Method in interface org.gorpipe.querydialogs.FilteringColumnDefinition

Display detailed help for the column.

displayName - Variable in class org.gorpipe.querydialogs.ArgumentDescription

displayName - Variable in class org.gorpipe.querydialogs.factory.ColumnGroup

The name to use in graphical representations of the group

displayResults - Variable in class org.gorpipe.gorshell.GorShell.Settings

DisplayResults() - Constructor for class org.gorpipe.gorshell.SetCmd.DisplayResults

DIV - Static variable in class org.gorpipe.gor.GorScriptLexer

DIV - Static variable in class org.gorpipe.gor.GorScriptParser

DIV() - Method in class org.gorpipe.gor.GorScriptParser.TermContext

DIV(int) - Method in class org.gorpipe.gor.GorScriptParser.TermContext

divide(double) - Method in class gorsat.parser.CalcLambdaBoolean

divide(double) - Method in class gorsat.parser.CalcLambdaDouble

divide(double) - Method in class gorsat.parser.CalcLambdaDoubleConstant

divide(double) - Method in class gorsat.parser.CalcLambdaInteger

divide(double) - Method in class gorsat.parser.CalcLambdaIntegerConstant

divide(double) - Method in class gorsat.parser.CalcLambdaLong

divide(double) - Method in class gorsat.parser.CalcLambdaLongConstant

divide(double) - Method in class gorsat.parser.CalcLambdaString

divide(double) - Method in class gorsat.parser.CalcLambdaStringConstant

divide(double) - Method in class gorsat.parser.CalcLambdaVariable

divide(int) - Method in class gorsat.parser.CalcLambdaBoolean

divide(int) - Method in class gorsat.parser.CalcLambdaDouble

divide(int) - Method in class gorsat.parser.CalcLambdaDoubleConstant

divide(int) - Method in class gorsat.parser.CalcLambdaInteger

divide(int) - Method in class gorsat.parser.CalcLambdaIntegerConstant

divide(int) - Method in class gorsat.parser.CalcLambdaLong

divide(int) - Method in class gorsat.parser.CalcLambdaLongConstant

divide(int) - Method in class gorsat.parser.CalcLambdaString

divide(int) - Method in class gorsat.parser.CalcLambdaStringConstant

divide(int) - Method in class gorsat.parser.CalcLambdaVariable

divide(long) - Method in class gorsat.parser.CalcLambdaBoolean

divide(long) - Method in class gorsat.parser.CalcLambdaDouble

divide(long) - Method in class gorsat.parser.CalcLambdaDoubleConstant

divide(long) - Method in class gorsat.parser.CalcLambdaInteger

divide(long) - Method in class gorsat.parser.CalcLambdaIntegerConstant

divide(long) - Method in class gorsat.parser.CalcLambdaLong

divide(long) - Method in class gorsat.parser.CalcLambdaLongConstant

divide(long) - Method in class gorsat.parser.CalcLambdaString

divide(long) - Method in class gorsat.parser.CalcLambdaStringConstant

divide(long) - Method in class gorsat.parser.CalcLambdaVariable

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaBoolean

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaDouble

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaDoubleConstant

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaInteger

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaIntegerConstant

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaLong

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaLongConstant

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaString

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaStringConstant

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaVariable

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaBoolean

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaDouble

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaDoubleConstant

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaInteger

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaIntegerConstant

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaLong

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaLongConstant

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaString

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaStringConstant

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaVariable

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaBoolean

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaDouble

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaDoubleConstant

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaInteger

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaIntegerConstant

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaLong

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaLongConstant

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaString

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaStringConstant

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaVariable

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaBoolean

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaDouble

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaDoubleConstant

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaInteger

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaIntegerConstant

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaLong

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaLongConstant

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaString

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaStringConstant

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaVariable

divide(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaInteger

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaBoolean

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDouble

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDoubleConstant

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaInteger

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaIntegerConstant

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLong

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLongConstant

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaString

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaStringConstant

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaVariable

DominantLogLikelihood - Class in org.gorpipe.gor.gava

Log likelihood calculator for dominant variant association.

DominantLogLikelihood() - Constructor for class org.gorpipe.gor.gava.DominantLogLikelihood

dotProd(double[], double[], int) - Static method in class gorsat.Regression.LinearAlgebra

Computes the dot product of the sub-vectors of x and y consisting of the elements whose index is < len.

dotProd(double[], double[], int, int) - Static method in class gorsat.Regression.LinearAlgebra

Computes the dot product of the sub-vectors of x and y consisting of the elements whose index is < upTo and ≥ offset.

DoubleQuoteString - Static variable in class org.gorpipe.gor.GorScriptLexer

DoubleQuoteString - Static variable in class org.gorpipe.gor.GorScriptParser

DoubleQuoteString() - Method in class org.gorpipe.gor.GorScriptParser.String_literalContext

E

EMPTY_FORMAT - Static variable in class org.gorpipe.querydialogs.util.ValueFormatter

endSession() - Method in class org.gorpipe.gor.RequestStats

enlarge(int) - Method in class gorsat.RowBuffer

enterArgument(GorScriptParser.ArgumentContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.argument().

enterArgument(GorScriptParser.ArgumentContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.argument().

enterCalc_command(GorScriptParser.Calc_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.calc_command().

enterCalc_command(GorScriptParser.Calc_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.calc_command().

enterCalc_expression(GorScriptParser.Calc_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.calc_expression().

enterCalc_expression(GorScriptParser.Calc_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.calc_expression().

enterCalc_expression_list(GorScriptParser.Calc_expression_listContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.calc_expression_list().

enterCalc_expression_list(GorScriptParser.Calc_expression_listContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.calc_expression_list().

enterColumn_list(GorScriptParser.Column_listContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.column_list().

enterColumn_list(GorScriptParser.Column_listContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.column_list().

enterColumn_name(GorScriptParser.Column_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.column_name().

enterColumn_name(GorScriptParser.Column_nameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.column_name().

enterColumn_number(GorScriptParser.Column_numberContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.column_number().

enterColumn_number(GorScriptParser.Column_numberContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.column_number().

enterColumn_range(GorScriptParser.Column_rangeContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.column_range().

enterColumn_range(GorScriptParser.Column_rangeContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.column_range().

enterColumn_ref(GorScriptParser.Column_refContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.column_ref().

enterColumn_ref(GorScriptParser.Column_refContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.column_ref().

enterColumn_rename_rule(GorScriptParser.Column_rename_ruleContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.column_rename_rule().

enterColumn_rename_rule(GorScriptParser.Column_rename_ruleContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.column_rename_rule().

enterColumn_selection(GorScriptParser.Column_selectionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.column_selection().

enterColumn_selection(GorScriptParser.Column_selectionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.column_selection().

enterColumn_wildcard(GorScriptParser.Column_wildcardContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.column_wildcard().

enterColumn_wildcard(GorScriptParser.Column_wildcardContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.column_wildcard().

enterCompare_expressions(GorScriptParser.Compare_expressionsContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.compare_expressions().

enterCompare_expressions(GorScriptParser.Compare_expressionsContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.compare_expressions().

enterCreate_statement(GorScriptParser.Create_statementContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.create_statement().

enterCreate_statement(GorScriptParser.Create_statementContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.create_statement().

enterDef_macro(GorScriptParser.Def_macroContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.def_macro().

enterDef_macro(GorScriptParser.Def_macroContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.def_macro().

enterEveryRule(ParserRuleContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

enterExpression(GorScriptParser.ExpressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.expression().

enterExpression(GorScriptParser.ExpressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.expression().

enterFactor(GorScriptParser.FactorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.factor().

enterFactor(GorScriptParser.FactorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.factor().

enterFilename(GorScriptParser.FilenameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.filename().

enterFilename(GorScriptParser.FilenameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.filename().

enterFunction_call(GorScriptParser.Function_callContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.function_call().

enterFunction_call(GorScriptParser.Function_callContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.function_call().

enterFunction_expr(GorScriptParser.Function_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.function_expr().

enterFunction_expr(GorScriptParser.Function_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.function_expr().

enterFunction_name(GorScriptParser.Function_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.function_name().

enterFunction_name(GorScriptParser.Function_nameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.function_name().

enterGeneric_command(GorScriptParser.Generic_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.generic_command().

enterGeneric_command(GorScriptParser.Generic_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.generic_command().

enterGor_expression(GorScriptParser.Gor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.gor_expression().

enterGor_expression(GorScriptParser.Gor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.gor_expression().

enterGornor_expression(GorScriptParser.Gornor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.gornor_expression().

enterGornor_expression(GorScriptParser.Gornor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.gornor_expression().

enterHide_command(GorScriptParser.Hide_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.hide_command().

enterHide_command(GorScriptParser.Hide_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.hide_command().

enterIf_expr(GorScriptParser.If_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.if_expr().

enterIf_expr(GorScriptParser.If_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.if_expr().

enterIn_expression(GorScriptParser.In_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.in_expression().

enterIn_expression(GorScriptParser.In_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.in_expression().

enterIndag_expression(GorScriptParser.Indag_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.indag_expression().

enterIndag_expression(GorScriptParser.Indag_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.indag_expression().

enterInput_source(GorScriptParser.Input_sourceContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.input_source().

enterInput_source(GorScriptParser.Input_sourceContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.input_source().

enterMacro_name(GorScriptParser.Macro_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.macro_name().

enterMacro_name(GorScriptParser.Macro_nameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.macro_name().

enterMacro_value(GorScriptParser.Macro_valueContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.macro_value().

enterMacro_value(GorScriptParser.Macro_valueContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.macro_value().

enterNested_query(GorScriptParser.Nested_queryContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.nested_query().

enterNested_query(GorScriptParser.Nested_queryContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.nested_query().

enterNor_expression(GorScriptParser.Nor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.nor_expression().

enterNor_expression(GorScriptParser.Nor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.nor_expression().

enterNot_rel_expr(GorScriptParser.Not_rel_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.not_rel_expr().

enterNot_rel_expr(GorScriptParser.Not_rel_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.not_rel_expr().

enterNumber(GorScriptParser.NumberContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.number().

enterNumber(GorScriptParser.NumberContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.number().

enterOption(GorScriptParser.OptionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.option().

enterOption(GorScriptParser.OptionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.option().

enterOption_value(GorScriptParser.Option_valueContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.option_value().

enterOption_value(GorScriptParser.Option_valueContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.option_value().

enterOptional_power_factor(GorScriptParser.Optional_power_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.optional_power_factor().

enterOptional_power_factor(GorScriptParser.Optional_power_factorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.optional_power_factor().

enterOptions_and_args(GorScriptParser.Options_and_argsContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.options_and_args().

enterOptions_and_args(GorScriptParser.Options_and_argsContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.options_and_args().

enterParen_expr(GorScriptParser.Paren_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.paren_expr().

enterParen_expr(GorScriptParser.Paren_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.paren_expr().

enterParen_rel_expr(GorScriptParser.Paren_rel_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.paren_rel_expr().

enterParen_rel_expr(GorScriptParser.Paren_rel_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.paren_rel_expr().

enterPgor_expression(GorScriptParser.Pgor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.pgor_expression().

enterPgor_expression(GorScriptParser.Pgor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.pgor_expression().

enterPipe_command(GorScriptParser.Pipe_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.pipe_command().

enterPipe_command(GorScriptParser.Pipe_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.pipe_command().

enterPower_factor(GorScriptParser.Power_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.power_factor().

enterPower_factor(GorScriptParser.Power_factorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.power_factor().

enterPredicate(GorScriptParser.PredicateContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.predicate().

enterPredicate(GorScriptParser.PredicateContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.predicate().

enterPredicate_factor(GorScriptParser.Predicate_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.predicate_factor().

enterPredicate_factor(GorScriptParser.Predicate_factorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.predicate_factor().

enterQuery_expression(GorScriptParser.Query_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.query_expression().

enterQuery_expression(GorScriptParser.Query_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.query_expression().

enterRel_expr(GorScriptParser.Rel_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.rel_expr().

enterRel_expr(GorScriptParser.Rel_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.rel_expr().

enterRel_term(GorScriptParser.Rel_termContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.rel_term().

enterRel_term(GorScriptParser.Rel_termContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.rel_term().

enterRename_command(GorScriptParser.Rename_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.rename_command().

enterRename_command(GorScriptParser.Rename_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.rename_command().

enterReplace_command(GorScriptParser.Replace_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.replace_command().

enterReplace_command(GorScriptParser.Replace_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.replace_command().

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Calc_commandContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Calc_expression_listContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Calc_expressionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_listContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_nameContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_numberContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_rangeContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_refContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_rename_ruleContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_wildcardContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Create_statementContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Def_macroContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.FactorContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.FilenameContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Function_exprContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Function_nameContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Generic_commandContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Gornor_expressionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Hide_commandContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.In_expressionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Input_sourceContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Macro_nameContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Macro_valueContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Nested_queryContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Not_rel_exprContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.NumberContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Option_valueContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Optional_power_factorContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.OptionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Paren_exprContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Paren_rel_exprContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Power_factorContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Predicate_factorContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.PredicateContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Query_expressionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Rel_exprContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Rel_termContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Rename_commandContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Replace_commandContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Select_commandContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Signed_factorContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.String_literal_listContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.String_literalContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.TermContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.ValueContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.VariableContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relation_nameContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relationContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Where_commandContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.XfactorContext

enterScript(GorScriptParser.ScriptContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.script().

enterScript(GorScriptParser.ScriptContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.script().

enterSelect_command(GorScriptParser.Select_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.select_command().

enterSelect_command(GorScriptParser.Select_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.select_command().

enterSigned_factor(GorScriptParser.Signed_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.signed_factor().

enterSigned_factor(GorScriptParser.Signed_factorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.signed_factor().

enterString_literal(GorScriptParser.String_literalContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.string_literal().

enterString_literal(GorScriptParser.String_literalContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.string_literal().

enterString_literal_list(GorScriptParser.String_literal_listContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.string_literal_list().

enterString_literal_list(GorScriptParser.String_literal_listContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.string_literal_list().

enterTerm(GorScriptParser.TermContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.term().

enterTerm(GorScriptParser.TermContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.term().

enterValue(GorScriptParser.ValueContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.value().

enterValue(GorScriptParser.ValueContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.value().

enterVariable(GorScriptParser.VariableContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.variable().

enterVariable(GorScriptParser.VariableContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.variable().

enterVirtual_relation(GorScriptParser.Virtual_relationContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.virtual_relation().

enterVirtual_relation(GorScriptParser.Virtual_relationContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.virtual_relation().

enterVirtual_relation_name(GorScriptParser.Virtual_relation_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.virtual_relation_name().

enterVirtual_relation_name(GorScriptParser.Virtual_relation_nameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.virtual_relation_name().

enterWhere_command(GorScriptParser.Where_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.where_command().

enterWhere_command(GorScriptParser.Where_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.where_command().

enterXfactor(GorScriptParser.XfactorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.xfactor().

enterXfactor(GorScriptParser.XfactorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.xfactor().

EOF() - Method in class org.gorpipe.gor.GorScriptParser.Calc_expressionContext

EOF() - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

EOS - Static variable in class org.gorpipe.gor.GorScriptLexer

EOS - Static variable in class org.gorpipe.gor.GorScriptParser

EOS() - Method in class org.gorpipe.gor.GorScriptParser.Create_statementContext

EOS() - Method in class org.gorpipe.gor.GorScriptParser.Macro_valueContext

EOS(int) - Method in class org.gorpipe.gor.GorScriptParser.Macro_valueContext

EQ - Static variable in class org.gorpipe.gor.GorScriptLexer

EQ - Static variable in class org.gorpipe.gor.GorScriptParser

EQ() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

ERRCHAR - Static variable in class org.gorpipe.gor.GorScriptLexer

ERRCHAR - Static variable in class org.gorpipe.gor.GorScriptParser

errorMsgTemplate - Variable in class org.gorpipe.querydialogs.Dialog

estimateSize() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

evaluate(ColumnValueProvider) - Method in interface gorsat.parser.CvpBooleanLambda

evaluate(ColumnValueProvider) - Method in interface gorsat.parser.CvpDoubleLambda

evaluate(ColumnValueProvider) - Method in interface gorsat.parser.CvpIntegerLambda

evaluate(ColumnValueProvider) - Method in interface gorsat.parser.CvpLongLambda

evaluate(ColumnValueProvider) - Method in interface gorsat.parser.CvpStringLambda

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaBoolean

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDouble

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDoubleConstant

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaInteger

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaIntegerConstant

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLong

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLongConstant

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaString

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaStringConstant

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaVariable

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaBoolean

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDouble

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDoubleConstant

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaInteger

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaIntegerConstant

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLong

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLongConstant

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaString

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaStringConstant

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaVariable

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaBoolean

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDouble

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDoubleConstant

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaInteger

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaIntegerConstant

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLong

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLongConstant

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaString

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaStringConstant

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaVariable

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaBoolean

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDouble

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDoubleConstant

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaInteger

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaIntegerConstant

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLong

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLongConstant

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaString

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaStringConstant

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaVariable

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaBoolean

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDouble

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDoubleConstant

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaInteger

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaIntegerConstant

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLong

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLongConstant

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaString

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaStringConstant

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaVariable

exec(List) - Method in class org.gorpipe.querydialogs.templating.QueryEvalMethodModel

exec(List) - Method in class org.gorpipe.querydialogs.templating.SkipFirstMethodModel

executable - Variable in class org.gorpipe.querydialogs.Dialog

exitArgument(GorScriptParser.ArgumentContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.argument().

exitArgument(GorScriptParser.ArgumentContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.argument().

exitCalc_command(GorScriptParser.Calc_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.calc_command().

exitCalc_command(GorScriptParser.Calc_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.calc_command().

exitCalc_expression(GorScriptParser.Calc_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.calc_expression().

exitCalc_expression(GorScriptParser.Calc_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.calc_expression().

exitCalc_expression_list(GorScriptParser.Calc_expression_listContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.calc_expression_list().

exitCalc_expression_list(GorScriptParser.Calc_expression_listContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.calc_expression_list().

ExitCmd - Class in org.gorpipe.gorshell

ExitCmd() - Constructor for class org.gorpipe.gorshell.ExitCmd

exitColumn_list(GorScriptParser.Column_listContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.column_list().

exitColumn_list(GorScriptParser.Column_listContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.column_list().

exitColumn_name(GorScriptParser.Column_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.column_name().

exitColumn_name(GorScriptParser.Column_nameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.column_name().

exitColumn_number(GorScriptParser.Column_numberContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.column_number().

exitColumn_number(GorScriptParser.Column_numberContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.column_number().

exitColumn_range(GorScriptParser.Column_rangeContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.column_range().

exitColumn_range(GorScriptParser.Column_rangeContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.column_range().

exitColumn_ref(GorScriptParser.Column_refContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.column_ref().

exitColumn_ref(GorScriptParser.Column_refContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.column_ref().

exitColumn_rename_rule(GorScriptParser.Column_rename_ruleContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.column_rename_rule().

exitColumn_rename_rule(GorScriptParser.Column_rename_ruleContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.column_rename_rule().

exitColumn_selection(GorScriptParser.Column_selectionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.column_selection().

exitColumn_selection(GorScriptParser.Column_selectionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.column_selection().

exitColumn_wildcard(GorScriptParser.Column_wildcardContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.column_wildcard().

exitColumn_wildcard(GorScriptParser.Column_wildcardContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.column_wildcard().

exitCompare_expressions(GorScriptParser.Compare_expressionsContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.compare_expressions().

exitCompare_expressions(GorScriptParser.Compare_expressionsContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.compare_expressions().

exitCreate_statement(GorScriptParser.Create_statementContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.create_statement().

exitCreate_statement(GorScriptParser.Create_statementContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.create_statement().

exitDef_macro(GorScriptParser.Def_macroContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.def_macro().

exitDef_macro(GorScriptParser.Def_macroContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.def_macro().

exitEveryRule(ParserRuleContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

exitExpression(GorScriptParser.ExpressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.expression().

exitExpression(GorScriptParser.ExpressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.expression().

exitFactor(GorScriptParser.FactorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.factor().

exitFactor(GorScriptParser.FactorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.factor().

exitFilename(GorScriptParser.FilenameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.filename().

exitFilename(GorScriptParser.FilenameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.filename().

exitFunction_call(GorScriptParser.Function_callContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.function_call().

exitFunction_call(GorScriptParser.Function_callContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.function_call().

exitFunction_expr(GorScriptParser.Function_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.function_expr().

exitFunction_expr(GorScriptParser.Function_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.function_expr().

exitFunction_name(GorScriptParser.Function_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.function_name().

exitFunction_name(GorScriptParser.Function_nameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.function_name().

exitGeneric_command(GorScriptParser.Generic_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.generic_command().

exitGeneric_command(GorScriptParser.Generic_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.generic_command().

exitGor_expression(GorScriptParser.Gor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.gor_expression().

exitGor_expression(GorScriptParser.Gor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.gor_expression().

exitGornor_expression(GorScriptParser.Gornor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.gornor_expression().

exitGornor_expression(GorScriptParser.Gornor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.gornor_expression().

exitHide_command(GorScriptParser.Hide_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.hide_command().

exitHide_command(GorScriptParser.Hide_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.hide_command().

exitIf_expr(GorScriptParser.If_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.if_expr().

exitIf_expr(GorScriptParser.If_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.if_expr().

exitIn_expression(GorScriptParser.In_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.in_expression().

exitIn_expression(GorScriptParser.In_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.in_expression().

exitIndag_expression(GorScriptParser.Indag_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.indag_expression().

exitIndag_expression(GorScriptParser.Indag_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.indag_expression().

exitInput_source(GorScriptParser.Input_sourceContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.input_source().

exitInput_source(GorScriptParser.Input_sourceContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.input_source().

exitMacro_name(GorScriptParser.Macro_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.macro_name().

exitMacro_name(GorScriptParser.Macro_nameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.macro_name().

exitMacro_value(GorScriptParser.Macro_valueContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.macro_value().

exitMacro_value(GorScriptParser.Macro_valueContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.macro_value().

exitNested_query(GorScriptParser.Nested_queryContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.nested_query().

exitNested_query(GorScriptParser.Nested_queryContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.nested_query().

exitNor_expression(GorScriptParser.Nor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.nor_expression().

exitNor_expression(GorScriptParser.Nor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.nor_expression().

exitNot_rel_expr(GorScriptParser.Not_rel_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.not_rel_expr().

exitNot_rel_expr(GorScriptParser.Not_rel_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.not_rel_expr().

exitNumber(GorScriptParser.NumberContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.number().

exitNumber(GorScriptParser.NumberContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.number().

exitOption(GorScriptParser.OptionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.option().

exitOption(GorScriptParser.OptionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.option().

exitOption_value(GorScriptParser.Option_valueContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.option_value().

exitOption_value(GorScriptParser.Option_valueContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.option_value().

exitOptional_power_factor(GorScriptParser.Optional_power_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.optional_power_factor().

exitOptional_power_factor(GorScriptParser.Optional_power_factorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.optional_power_factor().

exitOptions_and_args(GorScriptParser.Options_and_argsContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.options_and_args().

exitOptions_and_args(GorScriptParser.Options_and_argsContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.options_and_args().

exitParen_expr(GorScriptParser.Paren_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.paren_expr().

exitParen_expr(GorScriptParser.Paren_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.paren_expr().

exitParen_rel_expr(GorScriptParser.Paren_rel_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.paren_rel_expr().

exitParen_rel_expr(GorScriptParser.Paren_rel_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.paren_rel_expr().

exitPgor_expression(GorScriptParser.Pgor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.pgor_expression().

exitPgor_expression(GorScriptParser.Pgor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.pgor_expression().

exitPipe_command(GorScriptParser.Pipe_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.pipe_command().

exitPipe_command(GorScriptParser.Pipe_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.pipe_command().

exitPower_factor(GorScriptParser.Power_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.power_factor().

exitPower_factor(GorScriptParser.Power_factorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.power_factor().

exitPredicate(GorScriptParser.PredicateContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.predicate().

exitPredicate(GorScriptParser.PredicateContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.predicate().

exitPredicate_factor(GorScriptParser.Predicate_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.predicate_factor().

exitPredicate_factor(GorScriptParser.Predicate_factorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.predicate_factor().

exitQuery_expression(GorScriptParser.Query_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.query_expression().

exitQuery_expression(GorScriptParser.Query_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.query_expression().

exitRel_expr(GorScriptParser.Rel_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.rel_expr().

exitRel_expr(GorScriptParser.Rel_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.rel_expr().

exitRel_term(GorScriptParser.Rel_termContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.rel_term().

exitRel_term(GorScriptParser.Rel_termContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.rel_term().

exitRename_command(GorScriptParser.Rename_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.rename_command().

exitRename_command(GorScriptParser.Rename_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.rename_command().

exitReplace_command(GorScriptParser.Replace_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.replace_command().

exitReplace_command(GorScriptParser.Replace_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.replace_command().

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Calc_commandContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Calc_expression_listContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Calc_expressionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_listContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_nameContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_numberContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_rangeContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_refContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_rename_ruleContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_wildcardContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Create_statementContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Def_macroContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.FactorContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.FilenameContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Function_exprContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Function_nameContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Generic_commandContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Gornor_expressionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Hide_commandContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.In_expressionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Input_sourceContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Macro_nameContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Macro_valueContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Nested_queryContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Not_rel_exprContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.NumberContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Option_valueContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Optional_power_factorContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.OptionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Paren_exprContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Paren_rel_exprContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Power_factorContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Predicate_factorContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.PredicateContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Query_expressionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Rel_exprContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Rel_termContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Rename_commandContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Replace_commandContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Select_commandContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Signed_factorContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.String_literal_listContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.String_literalContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.TermContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.ValueContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.VariableContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relation_nameContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relationContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Where_commandContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.XfactorContext

exitScript(GorScriptParser.ScriptContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.script().

exitScript(GorScriptParser.ScriptContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.script().

exitSelect_command(GorScriptParser.Select_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.select_command().

exitSelect_command(GorScriptParser.Select_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.select_command().

exitSigned_factor(GorScriptParser.Signed_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.signed_factor().

exitSigned_factor(GorScriptParser.Signed_factorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.signed_factor().

exitString_literal(GorScriptParser.String_literalContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.string_literal().

exitString_literal(GorScriptParser.String_literalContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.string_literal().

exitString_literal_list(GorScriptParser.String_literal_listContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.string_literal_list().

exitString_literal_list(GorScriptParser.String_literal_listContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.string_literal_list().

exitTerm(GorScriptParser.TermContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.term().

exitTerm(GorScriptParser.TermContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.term().

exitValue(GorScriptParser.ValueContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.value().

exitValue(GorScriptParser.ValueContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.value().

exitVariable(GorScriptParser.VariableContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.variable().

exitVariable(GorScriptParser.VariableContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.variable().

exitVirtual_relation(GorScriptParser.Virtual_relationContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.virtual_relation().

exitVirtual_relation(GorScriptParser.Virtual_relationContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.virtual_relation().

exitVirtual_relation_name(GorScriptParser.Virtual_relation_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.virtual_relation_name().

exitVirtual_relation_name(GorScriptParser.Virtual_relation_nameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.virtual_relation_name().

exitWhere_command(GorScriptParser.Where_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.where_command().

exitWhere_command(GorScriptParser.Where_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.where_command().

exitXfactor(GorScriptParser.XfactorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.xfactor().

exitXfactor(GorScriptParser.XfactorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.xfactor().

expression() - Method in class org.gorpipe.gor.GorScriptParser.Calc_expression_listContext

expression() - Method in class org.gorpipe.gor.GorScriptParser.Calc_expressionContext

expression() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

expression() - Method in class org.gorpipe.gor.GorScriptParser

expression() - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

expression() - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

expression() - Method in class org.gorpipe.gor.GorScriptParser.In_expressionContext

expression() - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

expression() - Method in class org.gorpipe.gor.GorScriptParser.Paren_exprContext

expression(int) - Method in class org.gorpipe.gor.GorScriptParser.Calc_expression_listContext

expression(int) - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

expression(int) - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

expression(int) - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

expression(int) - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

ExpressionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.ExpressionContext

extractValue(String) - Method in enum org.gorpipe.querydialogs.factory.ArgumentContent.Format

Extract value from content string.

extractValues - Variable in class org.gorpipe.querydialogs.GridArgument

Defines whether grid values or grid name should be used in selector.

F

factor() - Method in class org.gorpipe.gor.GorScriptParser

factor() - Method in class org.gorpipe.gor.GorScriptParser.Optional_power_factorContext

factor() - Method in class org.gorpipe.gor.GorScriptParser.Power_factorContext

factor(int) - Method in class org.gorpipe.gor.GorScriptParser.Power_factorContext

FactorContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.FactorContext

fd3 - Static variable in class gorsat.process.GorJavaUtilities

FILE - Static variable in class org.gorpipe.querydialogs.ArgumentType

FILE_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

FileArgument - Class in org.gorpipe.querydialogs.argument

Represents an argument that expects a file path.

FileArgument(FileArgument) - Constructor for class org.gorpipe.querydialogs.argument.FileArgument

Constructor that copies the input file argument.

FileArgument(ArgumentDescription, Boolean, Object, Boolean, Integer, String) - Constructor for class org.gorpipe.querydialogs.argument.FileArgument

Constructor.

FileArgumentBuilder - Class in org.gorpipe.querydialogs.factory.builder

Responsible for building file arguments.

FileArgumentBuilder(FileReader) - Constructor for class org.gorpipe.querydialogs.factory.builder.FileArgumentBuilder

fileCacheEnabled - Variable in class org.gorpipe.gorshell.GorShell.Settings

filename() - Method in class org.gorpipe.gor.GorScriptParser

filename() - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

filename() - Method in class org.gorpipe.gor.GorScriptParser.Input_sourceContext

FILENAME - Static variable in class org.gorpipe.gor.GorScriptLexer

FILENAME - Static variable in class org.gorpipe.gor.GorScriptParser

FILENAME() - Method in class org.gorpipe.gor.GorScriptParser.FilenameContext

FilenameContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.FilenameContext

files - Variable in class org.gorpipe.gor.cli.manager.FilterOptions

filterCmd(String[], String) - Static method in class gorsat.process.ProcessRowSource

FILTERED_PN_LISTS - Static variable in class org.gorpipe.querydialogs.ArgumentType

FILTERED_PN_LISTS_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

FilteringColumnDefinition - Interface in org.gorpipe.querydialogs

Interface for filtering column definition.

FilterOptions - Class in org.gorpipe.gor.cli.manager

FilterOptions() - Constructor for class org.gorpipe.gor.cli.manager.FilterOptions

findTemplateSource(String) - Method in class org.gorpipe.querydialogs.templating.NetworkTemplateLoader

finish() - Method in class gorsat.external.plink.PlinkAdjustAdaptor

finish() - Method in class gorsat.external.plink.PlinkProcessAdaptor

finish() - Method in class gorsat.IOTestAnalyser

finish() - Method in class gorsat.parquet.GorParquetFileOut

fireContentsChanged(int, int) - Method in class org.gorpipe.querydialogs.AbstractListBean

firePropertyChange(PropertyChangeEvent) - Method in class org.gorpipe.querydialogs.BasicBean

Reports a bound property change.

firePropertyChange(String, boolean, boolean) - Method in class org.gorpipe.querydialogs.BasicBean

Support for reporting bound property changes for boolean properties.

firePropertyChange(String, byte, byte) - Method in class org.gorpipe.querydialogs.BasicBean

Reports a bound property change.

firePropertyChange(String, char, char) - Method in class org.gorpipe.querydialogs.BasicBean

Reports a bound property change.

firePropertyChange(String, double, double) - Method in class org.gorpipe.querydialogs.BasicBean

Reports a bound property change.

firePropertyChange(String, float, float) - Method in class org.gorpipe.querydialogs.BasicBean

Reports a bound property change.

firePropertyChange(String, int, int) - Method in class org.gorpipe.querydialogs.BasicBean

Support for reporting bound property changes for integer properties.

firePropertyChange(String, long, long) - Method in class org.gorpipe.querydialogs.BasicBean

Reports a bound property change.

firePropertyChange(String, short, short) - Method in class org.gorpipe.querydialogs.BasicBean

Reports a bound property change.

firePropertyChange(String, Object, Object) - Method in class org.gorpipe.querydialogs.BasicBean

Support for reporting bound property changes for Object properties.

FIRST_POSSIBLE_CHROMOSOME_VALUE - Static variable in class org.gorpipe.gor.GorConstants

forEachRemaining(Consumer<? super Row>) - Method in class gorsat.BatchedPipeStepIteratorAdaptor

format - Variable in class org.gorpipe.querydialogs.factory.ArgumentContent

The format.

format(Object, Object...) - Method in class org.gorpipe.querydialogs.util.ValueFormatter

formatForStore(String) - Method in enum org.gorpipe.querydialogs.factory.ArgumentContent.Format

Format value.

FormattingOptions - Class in org.gorpipe.gor.cli

FormattingOptions() - Constructor for class org.gorpipe.gor.cli.FormattingOptions

FRAMEBUFFERSIZE_KEY - Static variable in interface gorsat.BatchedReadSourceConfig

FreemarkerQueryUtilities - Class in gorsat

Helper functions to parse and create reports with the freemarker parsing engine.

FreemarkerReportBuilder - Class in gorsat.process

Report builder class for building freemarker based reports via yml files.

FreemarkerReportBuilder(GorSession) - Constructor for class gorsat.process.FreemarkerReportBuilder

FULL_PACKING - org.gorpipe.gor.manager.BucketManager.BucketPackLevel

function_call() - Method in class org.gorpipe.gor.GorScriptParser

function_call() - Method in class org.gorpipe.gor.GorScriptParser.Function_exprContext

function_call() - Method in class org.gorpipe.gor.GorScriptParser.PredicateContext

Function_callContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Function_callContext

function_expr() - Method in class org.gorpipe.gor.GorScriptParser

function_expr() - Method in class org.gorpipe.gor.GorScriptParser.XfactorContext

Function_exprContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Function_exprContext

function_name() - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

function_name() - Method in class org.gorpipe.gor.GorScriptParser

Function_nameContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Function_nameContext

G

GavaLogLikelihood - Class in org.gorpipe.gor.gava

Log-likelihood ratio calculator for variant association.

GavaLogLikelihood() - Constructor for class org.gorpipe.gor.gava.GavaLogLikelihood

GBasicRulesCalculator - Class in org.gorpipe.gor.haplotype

Checks the correctness of phase of haplotypes/genotypes using basic rules.

GBasicRulesCalculator() - Constructor for class org.gorpipe.gor.haplotype.GBasicRulesCalculator

GChiSquared2by2 - Class in org.gorpipe.gor.util

Chi-squared for 2-by-2 contingency tables.

GE - Static variable in class org.gorpipe.gor.GorScriptLexer

GE - Static variable in class org.gorpipe.gor.GorScriptParser

GE() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

GENE_LIST - Static variable in class org.gorpipe.querydialogs.ArgumentType

GENE_LIST_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

GENERIC - org.gorpipe.querydialogs.DialogType

A generic dialog

generic_command() - Method in class org.gorpipe.gor.GorScriptParser

generic_command() - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

Generic_commandContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Generic_commandContext

GenericGorRunner - Class in gorsat.process

This class handles the most basic gor pipe execution.

GenericGorRunner() - Constructor for class gorsat.process.GenericGorRunner

GenericRunnerFactory - Class in gorsat.process

Factory method for creating an instance of the GenericGorRunner class.

GenericRunnerFactory() - Constructor for class gorsat.process.GenericRunnerFactory

GenericSessionFactory - Class in gorsat.process

Factory class for creating default/generic gor sessions.

GenericSessionFactory() - Constructor for class gorsat.process.GenericSessionFactory

GenericSessionFactory(String, String) - Constructor for class gorsat.process.GenericSessionFactory

genomic_control_correct_p(double, double) - Static method in class gorsat.process.StatisticalAdjustment

genomic_control_correct_z(double, double) - Static method in class gorsat.process.StatisticalAdjustment

The genomic control corrected chi-2 statistic is computed by dividing the initial chi-2 statistic by lambda (the genomic inflation estimate).

GenotypeLookupUtilities - Class in gorsat.process

Genotype lookup utilities for generating vcf files from horizontal got gt data

GenotypeLookupUtilities() - Constructor for class gorsat.process.GenotypeLookupUtilities

get(int) - Method in class gorsat.RowBuffer

get(int) - Static method in class org.gorpipe.gor.util.GLogGamma

Returns log(i!).

get(int, int) - Method in class gorsat.process.GorJavaUtilities.PRPRPRValue

get(int, int) - Method in class gorsat.process.GorJavaUtilities.PRPRValue

get(int, int) - Method in class gorsat.process.GorJavaUtilities.VCFValue

getAF() - Method in class gorsat.gtgen.GTGen

getAliasName() - Method in class gorsat.process.GorJavaUtilities.CmdParams

getAllowedValues(Map<String, ? extends Object>) - Static method in class org.gorpipe.querydialogs.factory.ArgumentBuilder

getAn() - Method in class gorsat.gtgen.GTGen

Returns the number of samples which have coverage.

getArgument(String) - Method in class org.gorpipe.querydialogs.Dialog

getArgumentDescription(Map<String, ? extends Object>, String) - Method in class org.gorpipe.querydialogs.factory.ArgumentBuilder

getArgumentMap() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Get argument map.

getATN() - Method in class org.gorpipe.gor.GorScriptLexer

getATN() - Method in class org.gorpipe.gor.GorScriptParser

getAttribute(String) - Method in class org.gorpipe.querydialogs.Dialog

getAvgBasesPerMilliSecond() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getAvgBasesPerMilliSecond() - Method in class gorsat.BatchedReadSource

getAvgBatchSize() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getAvgBatchSize() - Method in class gorsat.BatchedReadSource

getAvgRowsPerMilliSecond() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getAvgRowsPerMilliSecond() - Method in class gorsat.BatchedReadSource

getAvgSeekTimeMilliSecond() - Method in class gorsat.BatchedReadSource

getBaseChartColumns() - Method in class org.gorpipe.querydialogs.Dialog

getBaseChartDF() - Method in class org.gorpipe.querydialogs.Dialog

getBaseChartExec() - Method in class org.gorpipe.querydialogs.Dialog

getBaseChartScript() - Method in class org.gorpipe.querydialogs.Dialog

getBaseQuery() - Method in class org.gorpipe.querydialogs.Dialog

getBatchOfferTimeout() - Method in interface gorsat.BatchedReadSourceConfig

getBucketSize() - Method in class org.gorpipe.gor.manager.BucketManager

getBucketSize() - Method in class org.gorpipe.gor.manager.TableManager

getBufferFillTime() - Method in interface gorsat.BatchedReadSourceConfig

getBufferFlushTimout() - Method in interface gorsat.BatchedReadSourceConfig

getCache(String) - Static method in class gorsat.process.GorSessionCacheManager

getCapacity() - Method in class gorsat.RowBuffer

getChannelNames() - Method in class org.gorpipe.gor.GorScriptLexer

getChart() - Method in class org.gorpipe.querydialogs.Dialog

getChiSqValue(double) - Static method in class org.gorpipe.gor.util.GChiSquared2by2

Get the chi-squared value corresponding to a p-value (assuming 1 degree of freedom).

getCmdPath() - Method in class gorsat.process.GorJavaUtilities.CmdParams

getColumnGroups() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

getCommand() - Method in class gorsat.process.GorJavaUtilities.CmdParams

getComparator() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getConnectionRetries() - Method in interface gorsat.BatchedReadSourceConfig

getConnectionRetryExponent() - Method in interface gorsat.BatchedReadSourceConfig

getConnectionRetryTime() - Method in interface gorsat.BatchedReadSourceConfig

getCurrentBatchLoc() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getCurrentBatchLoc() - Method in class gorsat.BatchedReadSource

getCurrentBatchRow(int) - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getCurrentBatchRow(int) - Method in class gorsat.BatchedReadSource

getCurrentBatchSize() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getCurrentBatchSize() - Method in class gorsat.BatchedReadSource

getDbIteratorSource(String, boolean, String, boolean) - Static method in class gorsat.process.GorJavaUtilities

getDefaultBucketDir() - Method in class org.gorpipe.gor.manager.BucketManager

getDefaultValue() - Method in class org.gorpipe.querydialogs.Argument

getDescription() - Method in class org.gorpipe.querydialogs.Argument

Get argument description.

getDescription() - Method in class org.gorpipe.querydialogs.Dialog

getDescription() - Method in interface org.gorpipe.querydialogs.FilteringColumnDefinition

Get the description of the column (one sentence).

getDescriptionPanelWithHyperlink(JComponent) - Method in interface org.gorpipe.querydialogs.FilteringColumnDefinition

The description is displayed in a panel.

getDialogCategory() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Get the dialog category the dialog belongs to.

getDialogsFilePath() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

getDisplayName() - Method in class org.gorpipe.querydialogs.Argument

Get the name to display for argument.

getDisplayName() - Method in class org.gorpipe.querydialogs.ArgumentDescription

Get the display name.

getDisplayWidth() - Method in class org.gorpipe.querydialogs.Argument

Get the display width for argument.

getDisplayWidth(Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.ArgumentBuilder

getEffectiveMinBucketSize() - Method in class org.gorpipe.gor.manager.BucketManager

Get effective min bucket size.

getElementAt(int) - Method in class org.gorpipe.querydialogs.Argument

getElementAt(int) - Method in class org.gorpipe.querydialogs.Dialog

getErrorMessage() - Method in class org.gorpipe.querydialogs.Dialog

getException() - Method in class org.gorpipe.gor.GorScriptAnalyzer

getException() - Method in interface org.gorpipe.jessica.GorQueryHandler

getExtraTasks() - Method in class org.gorpipe.gor.GorScriptAnalyzer

getFadeInImageColor() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Get the dialog fade in image color.

getFadeInImageColor() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialogDisplayParams

Get the fade in image color.

getFileFilterComponents() - Method in class org.gorpipe.querydialogs.argument.FileArgument

Get components for file filters (for example ['*.txt', '*.gor']).

getFilePath() - Method in class gorsat.process.NordIteratorEntry

getFileReader() - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

Get the FileResolver for this factory

getFileResolver() - Method in class org.gorpipe.querydialogs.Dialog

getFilterString() - Method in class org.gorpipe.querydialogs.factory.Perspective

getFiniteChiSqValue(double, int, int, int, int) - Static method in class org.gorpipe.gor.util.GChiSquared2by2

Get the chi-squared value corresponding to a p-value (assuming 1 degree of freedom), but if the p-value is zero compute the chi-squared value directly from the table.

getFormat() - Method in class org.gorpipe.querydialogs.argument.StringArgument

Get the format for the string argument.

getFormatByValueFormat(String) - Static method in enum org.gorpipe.querydialogs.factory.ArgumentContent.Format

Get format by value format key.

getFormattedValue() - Method in class org.gorpipe.querydialogs.argument.StringArgument

getFormatter() - Method in class org.gorpipe.querydialogs.argument.StringArgument

getFrameBufferSize() - Method in interface gorsat.BatchedReadSourceConfig

getGitSha() - Method in class org.gorpipe.querydialogs.Dialog

getGorLogisticRegressionObject(int, int) - Static method in class gorsat.Regression.LogisticRegression

getGrammarFileName() - Method in class org.gorpipe.gor.GorScriptLexer

getGrammarFileName() - Method in class org.gorpipe.gor.GorScriptParser

getGroupName() - Method in class org.gorpipe.querydialogs.factory.Perspective

getHeader() - Method in class gorsat.external.plink.GORLine

getHeader() - Method in class gorsat.external.plink.PlinkAdjustAdaptor

getHeader() - Method in class gorsat.IOTestAnalyser

getHeader() - Method in class gorsat.process.BaseStreamIterator

getHeader() - Method in class gorsat.process.GorStreamIterator

getHeader() - Method in class gorsat.process.NorStreamIterator

getHeader() - Method in class gorsat.process.NorToGorPipeStep

getHeader() - Method in class org.gorpipe.gor.function.GorRowQueryFunction

getHeader(String) - Method in class org.gorpipe.gor.function.GorRowQueryFunction

getHelpDefinition() - Method in class org.gorpipe.querydialogs.argument.StringArgument

Get help definition for argument.

getHelpLink() - Method in class org.gorpipe.querydialogs.Dialog

getHtmlTemplate() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Deprecated.

Should define an html template for perspectives instead

getIgnoreCase(Collection<String>, String) - Static method in class gorsat.process.GorJavaUtilities

getImageColor() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Get the dialog image color.

getImageColor() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialogDisplayParams

Get the image color.

getIndex() - Method in class gorsat.RowBuffer

getInfo() - Method in class org.gorpipe.gor.RequestStats

getInitialColumns() - Method in class org.gorpipe.querydialogs.factory.Perspective

getInitialColumns() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Deprecated.

Should define initial columns for perspectives instead

getInputFileFirstReport() - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

Get the name of the first report in the input file.

getInterpolatedChart() - Method in class org.gorpipe.querydialogs.Dialog

getInterpolatedQuery() - Method in class org.gorpipe.querydialogs.Dialog

getInvSqrtLambda_p(double[]) - Static method in class gorsat.process.StatisticalAdjustment

Returns 1 / sqrt(lambda) where lambda is the genomic inflation estimate.

getLastModified(Object) - Method in class org.gorpipe.querydialogs.templating.NetworkTemplateLoader

getListDescription() - Method in class org.gorpipe.querydialogs.Dialog

getListsColumnHeaders() - Method in class org.gorpipe.querydialogs.util.SubjectLists

Get the lists column headers.

getListsContent() - Method in class org.gorpipe.querydialogs.util.SubjectLists

Get lists content.

getListsNamesExcludeDefaultLists() - Method in class org.gorpipe.querydialogs.util.SubjectLists

Get comma separated lists names excluding default lists.

getListsNamesJoined() - Method in class org.gorpipe.querydialogs.util.SubjectLists

Get the names of lists in a comma separated string.

getListsSubjectContent() - Method in class org.gorpipe.querydialogs.util.SubjectLists

Returns content subject values.

getLockTimeout() - Method in class org.gorpipe.gor.manager.BucketManager

getLockTimeout() - Method in class org.gorpipe.gor.manager.TableManager

getLockType() - Method in class org.gorpipe.gor.manager.TableManager

getLogInterval() - Method in interface gorsat.BatchedReadSourceConfig

getMax() - Method in class org.gorpipe.querydialogs.argument.NumberArgument

getMaxGorlines() - Method in interface gorsat.BatchedReadSourceConfig

getMaxTextFieldMinWidth() - Method in class org.gorpipe.querydialogs.argument.NumberArgument

Get the minium width of a text field for the argument maximum value.

getMin() - Method in class org.gorpipe.querydialogs.argument.NumberArgument

getMinBucketSize() - Method in class org.gorpipe.gor.manager.BucketManager

getMinTextFieldMinWidth() - Method in class org.gorpipe.querydialogs.argument.NumberArgument

Get the minium width of a text field for the argument minimum value.

getModeNames() - Method in class org.gorpipe.gor.GorScriptLexer

getName() - Method in class org.gorpipe.querydialogs.Argument

Get argument name.

getName() - Method in class org.gorpipe.querydialogs.Dialog

getName() - Method in class org.gorpipe.querydialogs.factory.Perspective

getNumberOfCombinations(int, int) - Static method in class org.gorpipe.gor.gava.CombinationIterator

Computes the number of combinations.

getNumberOfSamples() - Method in class gorsat.gtgen.GTGen

getNumberValue() - Method in class org.gorpipe.querydialogs.argument.NumberArgument

getOperator() - Method in class org.gorpipe.querydialogs.Argument

getOperators() - Method in class org.gorpipe.querydialogs.Argument

getOutputHeader() - Method in interface org.gorpipe.jessica.GorQueryHandler

getPackageVersion() - Method in class org.gorpipe.querydialogs.Dialog

getPermutation() - Method in class org.gorpipe.gor.gava.CombinationIterator

getPersistingValueObject() - Method in class org.gorpipe.querydialogs.argument.StringArgument

Get the persisting value.

getPerspectives() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

getPerspectivesCopies() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Get copies of perspectives.

getPriorAf() - Method in class gorsat.gtgen.GTGen

getPriorAn() - Method in class gorsat.gtgen.GTGen

getPropertyChangeListeners() - Method in class org.gorpipe.querydialogs.BasicBean

Returns an array of all the property change listeners registered on this component.

getPropertyChangeListeners(String) - Method in class org.gorpipe.querydialogs.BasicBean

Returns an array of all the listeners which have been associated with the named property.

getPValue(double) - Static method in class org.gorpipe.gor.util.GChiSquared2by2

Get the p-value from a chi-squared value for a 2-by-2 table.

getQuery() - Method in class org.gorpipe.querydialogs.Dialog

getQueryEval() - Method in class org.gorpipe.querydialogs.Dialog

getQueryEval() - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

getRandomColor() - Static method in class org.gorpipe.querydialogs.factory.PerspectiveDialogDisplayParams

Get random color from available colors in map.

getReader(Object, String) - Method in class org.gorpipe.querydialogs.templating.NetworkTemplateLoader

getReportCommands() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Get the report command list.

getResults() - Method in interface org.gorpipe.jessica.GorQueryHandler

getRow() - Method in class gorsat.external.plink.AdjustedGORLineIterator

getRowArray() - Method in class gorsat.RowBuffer

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Calc_commandContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Calc_expression_listContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Calc_expressionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Column_listContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Column_nameContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Column_numberContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Column_rangeContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Column_refContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Column_rename_ruleContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Column_wildcardContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Create_statementContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Def_macroContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.FactorContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.FilenameContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Function_exprContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Function_nameContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Generic_commandContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Gornor_expressionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Hide_commandContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.In_expressionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Input_sourceContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Macro_nameContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Macro_valueContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Nested_queryContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Not_rel_exprContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.NumberContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Option_valueContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Optional_power_factorContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.OptionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Paren_exprContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Paren_rel_exprContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Power_factorContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Predicate_factorContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.PredicateContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Query_expressionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Rel_exprContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Rel_termContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Rename_commandContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Replace_commandContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Select_commandContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Signed_factorContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.String_literal_listContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.String_literalContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.TermContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.ValueContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.VariableContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relation_nameContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relationContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Where_commandContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.XfactorContext

getRuleNames() - Method in class org.gorpipe.gor.GorScriptLexer

getRuleNames() - Method in class org.gorpipe.gor.GorScriptParser

getSecurityContext() - Method in class org.gorpipe.gor.manager.TableManager

getSerializedATN() - Method in class org.gorpipe.gor.GorScriptLexer

getSerializedATN() - Method in class org.gorpipe.gor.GorScriptParser

getShell() - Method in class org.gorpipe.gorshell.Commands

getShortDescription() - Method in interface org.gorpipe.querydialogs.FilteringColumnDefinition

Get the short description of column (few words).

getShortName() - Method in class org.gorpipe.querydialogs.Dialog

getSigmoidFunction() - Static method in class gorsat.Regression.SigmoidFunction

getSize() - Method in class org.gorpipe.querydialogs.Argument

getSize() - Method in class org.gorpipe.querydialogs.Dialog

getStatsCollector() - Method in class org.gorpipe.gor.RequestStats

getSteps() - Method in interface org.gorpipe.jessica.GorQueryHandler

getStream() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getStream(boolean) - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getTag() - Method in class gorsat.process.NordIteratorEntry

getTasks() - Method in class org.gorpipe.gor.GorScriptAnalyzer

getTasksByLevel() - Method in class org.gorpipe.gor.GorScriptAnalyzer

getTasksByName() - Method in class org.gorpipe.gor.GorScriptAnalyzer

getTokenNames() - Method in class org.gorpipe.gor.GorScriptLexer

Deprecated.

getTokenNames() - Method in class org.gorpipe.gor.GorScriptParser

Deprecated.

getTooltip() - Method in class org.gorpipe.querydialogs.Argument

Get argument tooltip.

getType() - Method in class gorsat.parser.CalcLambdaBoolean

getType() - Method in class gorsat.parser.CalcLambdaDouble

getType() - Method in class gorsat.parser.CalcLambdaDoubleConstant

getType() - Method in class gorsat.parser.CalcLambdaInteger

getType() - Method in class gorsat.parser.CalcLambdaIntegerConstant

getType() - Method in class gorsat.parser.CalcLambdaLong

getType() - Method in class gorsat.parser.CalcLambdaLongConstant

getType() - Method in class gorsat.parser.CalcLambdaString

getType() - Method in class gorsat.parser.CalcLambdaStringConstant

getType() - Method in class gorsat.parser.CalcLambdaVariable

getType() - Method in class gorsat.process.GorJavaUtilities.CmdParams

getType() - Method in class org.gorpipe.querydialogs.Argument

getType() - Method in class org.gorpipe.querydialogs.Dialog

getValue() - Method in class gorsat.parser.CalcLambdaDoubleConstant

getValue() - Method in class gorsat.parser.CalcLambdaIntegerConstant

getValue() - Method in class gorsat.parser.CalcLambdaLongConstant

getValue() - Method in class org.gorpipe.querydialogs.Argument

getValuesFromMap(Map<String, String>) - Static method in class org.gorpipe.logging.GorLogbackUtil

getValuesHeader() - Method in class org.gorpipe.querydialogs.Argument

Get the values header.

getValuesPath() - Method in class org.gorpipe.querydialogs.Argument

getValuesPath(Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.ArgumentBuilder

getValueTextFieldMinWidth() - Method in class org.gorpipe.querydialogs.argument.NumberArgument

The minium width of a text field for the argument value.

getVersion() - Method in class org.gorpipe.querydialogs.Dialog

getViewString(Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.Perspective

Processes this perspectives view template with the given data.

getViewTemplate() - Method in class org.gorpipe.querydialogs.factory.Perspective

getViewTemplateColumns() - Method in class org.gorpipe.querydialogs.factory.Perspective

getViewType() - Method in class org.gorpipe.querydialogs.factory.Perspective

getVocabulary() - Method in class org.gorpipe.gor.GorScriptLexer

getVocabulary() - Method in class org.gorpipe.gor.GorScriptParser

getWriteSupport(Configuration) - Method in class gorsat.parquet.GorParquetWriter.GorParquetBuilder

GFisherExact2by2 - Class in org.gorpipe.gor.util

Fisher's exact test for 2-by-2 tables.

gitSHA - Variable in class org.gorpipe.querydialogs.Dialog

glCcToGp(int, char) - Static method in class gorsat.gtgen.GPParser

GLOBAL_GROUP - Static variable in class org.gorpipe.querydialogs.factory.Perspective

The group name assigned to perspectives that don't define their own group names.

GLogGamma - Class in org.gorpipe.gor.util

Compute the log of the Gamma-function for integer values, i.e., compute log(n!) for n = 0,1,2,...

GLogGamma() - Constructor for class org.gorpipe.gor.util.GLogGamma

glToGp(CharSequence, char) - Static method in class gorsat.gtgen.GPParser

GOR - Static variable in class org.gorpipe.gor.GorScriptLexer

GOR - Static variable in class org.gorpipe.gor.GorScriptParser

GOR() - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

gor_expression() - Method in class org.gorpipe.gor.GorScriptParser

gor_expression() - Method in class org.gorpipe.gor.GorScriptParser.Gornor_expressionContext

Gor_expressionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

GOR_GRID - Static variable in class org.gorpipe.querydialogs.ArgumentType

GOR_GRID_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

For selection from a gor grid (based on class GorViewer).

GorBench - Class in org.gorpipe.gor.cli

GorBench(String, String[], int, int) - Constructor for class org.gorpipe.gor.cli.GorBench

GorCLI - Class in org.gorpipe.gor.cli

GorCLI() - Constructor for class org.gorpipe.gor.cli.GorCLI

GorConfigDoc - Class in org.gorpipe.gor.cli

A main class to scan through the runtime classpath and find all descendants of Config.

GorConfigDoc() - Constructor for class org.gorpipe.gor.cli.GorConfigDoc

GorConstants - Class in org.gorpipe.gor

GorJavaUtilities - Class in gorsat.process

Created by sigmar on 21/12/15.

GorJavaUtilities() - Constructor for class gorsat.process.GorJavaUtilities

GorJavaUtilities.CmdParams - Class in gorsat.process

GorJavaUtilities.PRPRPRValue - Class in gorsat.process

GorJavaUtilities.PRPRValue - Class in gorsat.process

GorJavaUtilities.VCFValue - Class in gorsat.process

GORLine - Class in gorsat.external.plink

This class merges gor lines from multiple BufferedReaders.

GorLogbackUtil - Class in org.gorpipe.logging

GorMeta - Class in org.gorpipe.gor.cli

Main class to get meta information about gor files/urls resolved through the gor driver.

GorMeta(String, boolean) - Constructor for class org.gorpipe.gor.cli.GorMeta

gornor_expression() - Method in class org.gorpipe.gor.GorScriptParser

gornor_expression() - Method in class org.gorpipe.gor.GorScriptParser.Nested_queryContext

gornor_expression() - Method in class org.gorpipe.gor.GorScriptParser.Query_expressionContext

Gornor_expressionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Gornor_expressionContext

gorOnly - Variable in class org.gorpipe.querydialogs.GridArgument

Defines if only gor grids should be selected.

GorParquetFileOut - Class in gorsat.parquet

GorParquetFileOut(String, String, boolean) - Constructor for class gorsat.parquet.GorParquetFileOut

GorParquetWriter - Class in gorsat.parquet

Writes parquet file from a stream of gor/nor rows

GorParquetWriter(Path, WriteSupport<Row>, CompressionCodecName, int, int) - Constructor for class gorsat.parquet.GorParquetWriter

GorParquetWriter.GorParquetBuilder - Class in gorsat.parquet

GorParquetWriteSupport - Class in gorsat.parquet

Translates a gor/nor row to corresponding format in a parquet file

GorParquetWriteSupport() - Constructor for class gorsat.parquet.GorParquetWriteSupport

GorParsingError - Class in org.gorpipe.gor

GorParsingError(int, int, String) - Constructor for class org.gorpipe.gor.GorParsingError

GorParsingError(GorParsingException) - Constructor for class org.gorpipe.gor.GorParsingError

GorQueryHandler - Interface in org.gorpipe.jessica

GorRowFilterFunction<T extends org.gorpipe.gor.model.Row> - Class in org.gorpipe.gor.function

GorRowFilterFunction(String, String[], String[]) - Constructor for class org.gorpipe.gor.function.GorRowFilterFunction

GorRowInferFunction - Class in org.gorpipe.gor.function

For map-reduce type inferance, such as in SparkSQL which needs a schema The gor type syntax, I for Int, D for Double and S for String Two rows with types I and S are reduced to type S etc.

GorRowInferFunction() - Constructor for class org.gorpipe.gor.function.GorRowInferFunction

GorRowMapFunction - Class in org.gorpipe.gor.function

GorRowMapFunction(String, String[], String[]) - Constructor for class org.gorpipe.gor.function.GorRowMapFunction

GorRowQueryFunction - Class in org.gorpipe.gor.function

GorRowQueryFunction(String) - Constructor for class org.gorpipe.gor.function.GorRowQueryFunction

GorRowQueryFunction(String, String) - Constructor for class org.gorpipe.gor.function.GorRowQueryFunction

gorsat - package gorsat

gorsat.external.plink - package gorsat.external.plink

gorsat.gtgen - package gorsat.gtgen

gorsat.parquet - package gorsat.parquet

gorsat.parser - package gorsat.parser

gorsat.process - package gorsat.process

gorsat.Regression - package gorsat.Regression

GorScriptAnalyzer - Class in org.gorpipe.gor

GorScriptAnalyzer(String) - Constructor for class org.gorpipe.gor.GorScriptAnalyzer

GorScriptBaseListener - Class in org.gorpipe.gor

This class provides an empty implementation of GorScriptListener, which can be extended to create a listener which only needs to handle a subset of the available methods.

GorScriptBaseListener() - Constructor for class org.gorpipe.gor.GorScriptBaseListener

GorScriptBaseVisitor<T> - Class in org.gorpipe.gor

This class provides an empty implementation of GorScriptVisitor, which can be extended to create a visitor which only needs to handle a subset of the available methods.

GorScriptBaseVisitor() - Constructor for class org.gorpipe.gor.GorScriptBaseVisitor

GorScriptLexer - Class in org.gorpipe.gor

GorScriptLexer(CharStream) - Constructor for class org.gorpipe.gor.GorScriptLexer

GorScriptListener - Interface in org.gorpipe.gor

This interface defines a complete listener for a parse tree produced by GorScriptParser.

GorScriptParser - Class in org.gorpipe.gor

GorScriptParser(TokenStream) - Constructor for class org.gorpipe.gor.GorScriptParser

GorScriptParser.ArgumentContext - Class in org.gorpipe.gor

GorScriptParser.Calc_commandContext - Class in org.gorpipe.gor

GorScriptParser.Calc_expression_listContext - Class in org.gorpipe.gor

GorScriptParser.Calc_expressionContext - Class in org.gorpipe.gor

GorScriptParser.Column_listContext - Class in org.gorpipe.gor

GorScriptParser.Column_nameContext - Class in org.gorpipe.gor

GorScriptParser.Column_numberContext - Class in org.gorpipe.gor

GorScriptParser.Column_rangeContext - Class in org.gorpipe.gor

GorScriptParser.Column_refContext - Class in org.gorpipe.gor

GorScriptParser.Column_rename_ruleContext - Class in org.gorpipe.gor

GorScriptParser.Column_selectionContext - Class in org.gorpipe.gor

GorScriptParser.Column_wildcardContext - Class in org.gorpipe.gor

GorScriptParser.Compare_expressionsContext - Class in org.gorpipe.gor

GorScriptParser.Create_statementContext - Class in org.gorpipe.gor

GorScriptParser.Def_macroContext - Class in org.gorpipe.gor

GorScriptParser.ExpressionContext - Class in org.gorpipe.gor

GorScriptParser.FactorContext - Class in org.gorpipe.gor

GorScriptParser.FilenameContext - Class in org.gorpipe.gor

GorScriptParser.Function_callContext - Class in org.gorpipe.gor

GorScriptParser.Function_exprContext - Class in org.gorpipe.gor

GorScriptParser.Function_nameContext - Class in org.gorpipe.gor

GorScriptParser.Generic_commandContext - Class in org.gorpipe.gor

GorScriptParser.Gor_expressionContext - Class in org.gorpipe.gor

GorScriptParser.Gornor_expressionContext - Class in org.gorpipe.gor

GorScriptParser.Hide_commandContext - Class in org.gorpipe.gor

GorScriptParser.If_exprContext - Class in org.gorpipe.gor

GorScriptParser.In_expressionContext - Class in org.gorpipe.gor

GorScriptParser.Indag_expressionContext - Class in org.gorpipe.gor

GorScriptParser.Input_sourceContext - Class in org.gorpipe.gor

GorScriptParser.Macro_nameContext - Class in org.gorpipe.gor

GorScriptParser.Macro_valueContext - Class in org.gorpipe.gor

GorScriptParser.Nested_queryContext - Class in org.gorpipe.gor

GorScriptParser.Nor_expressionContext - Class in org.gorpipe.gor

GorScriptParser.Not_rel_exprContext - Class in org.gorpipe.gor

GorScriptParser.NumberContext - Class in org.gorpipe.gor

GorScriptParser.Option_valueContext - Class in org.gorpipe.gor

GorScriptParser.Optional_power_factorContext - Class in org.gorpipe.gor

GorScriptParser.OptionContext - Class in org.gorpipe.gor

GorScriptParser.Options_and_argsContext - Class in org.gorpipe.gor

GorScriptParser.Paren_exprContext - Class in org.gorpipe.gor

GorScriptParser.Paren_rel_exprContext - Class in org.gorpipe.gor

GorScriptParser.Pgor_expressionContext - Class in org.gorpipe.gor

GorScriptParser.Pipe_commandContext - Class in org.gorpipe.gor

GorScriptParser.Power_factorContext - Class in org.gorpipe.gor

GorScriptParser.Predicate_factorContext - Class in org.gorpipe.gor

GorScriptParser.PredicateContext - Class in org.gorpipe.gor

GorScriptParser.Query_expressionContext - Class in org.gorpipe.gor

GorScriptParser.Rel_exprContext - Class in org.gorpipe.gor

GorScriptParser.Rel_termContext - Class in org.gorpipe.gor

GorScriptParser.Rename_commandContext - Class in org.gorpipe.gor

GorScriptParser.Replace_commandContext - Class in org.gorpipe.gor

GorScriptParser.ScriptContext - Class in org.gorpipe.gor

GorScriptParser.Select_commandContext - Class in org.gorpipe.gor

GorScriptParser.Signed_factorContext - Class in org.gorpipe.gor

GorScriptParser.String_literal_listContext - Class in org.gorpipe.gor

GorScriptParser.String_literalContext - Class in org.gorpipe.gor

GorScriptParser.TermContext - Class in org.gorpipe.gor

GorScriptParser.ValueContext - Class in org.gorpipe.gor

GorScriptParser.VariableContext - Class in org.gorpipe.gor

GorScriptParser.Virtual_relation_nameContext - Class in org.gorpipe.gor

GorScriptParser.Virtual_relationContext - Class in org.gorpipe.gor

GorScriptParser.Where_commandContext - Class in org.gorpipe.gor

GorScriptParser.XfactorContext - Class in org.gorpipe.gor

GorScriptVisitor<T> - Interface in org.gorpipe.gor

This interface defines a complete generic visitor for a parse tree produced by GorScriptParser.

GorSessionCacheManager - Class in gorsat.process

Class that stores the session cache on a requestId key.

GorSessionFactory - Class in gorsat.process

GorSessionFactory() - Constructor for class gorsat.process.GorSessionFactory

GorShell - Class in org.gorpipe.gorshell

GorShell.Settings - Class in org.gorpipe.gorshell

GorShellSessionFactory - Class in org.gorpipe.gorshell

GorShellSessionFactory() - Constructor for class org.gorpipe.gorshell.GorShellSessionFactory

GorShellSessionFactory(String) - Constructor for class org.gorpipe.gorshell.GorShellSessionFactory

GorStreamIterator - Class in gorsat.process

GorStreamIterator(Supplier<Stream<String>>, boolean) - Constructor for class gorsat.process.GorStreamIterator

GorToolsCLI - Class in org.gorpipe.gor.tools

GorToolsCLI() - Constructor for class org.gorpipe.gor.tools.GorToolsCLI

GPParser - Class in gorsat.gtgen

Utility functions for parsing genotype probability triplets.

gracePeriodForDeletingBuckets - Variable in class org.gorpipe.gor.manager.BucketManager

gradient - Variable in class gorsat.Regression.LogisticRegression

gradMult - Variable in class gorsat.Regression.LogisticRegression

GRID - Static variable in class org.gorpipe.querydialogs.ArgumentType

GRID_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

For selection from a grid.

GridArgument - Class in org.gorpipe.querydialogs

Argument for selecting grids or values from grids.

GridArgument(StringArgument, List<RequiredColumn>, Boolean, Boolean, Boolean) - Constructor for class org.gorpipe.querydialogs.GridArgument

Constructor.

GridArgument(GridArgument) - Constructor for class org.gorpipe.querydialogs.GridArgument

Copy constructor.

GridArgumentBuilder - Class in org.gorpipe.querydialogs

Builder for grid argument.

GridArgumentBuilder(FileReader) - Constructor for class org.gorpipe.querydialogs.GridArgumentBuilder

GT - Static variable in class org.gorpipe.gor.GorScriptLexer

GT - Static variable in class org.gorpipe.gor.GorScriptParser

GT() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

GTGen - Class in gorsat.gtgen

A class for running simple joint variant calling.

GTGen(double, int) - Constructor for class gorsat.gtgen.GTGen

H

handleUnknownType(Object) - Method in class org.gorpipe.querydialogs.templating.DialogArgumentWrapper

hasColumnHelp() - Method in interface org.gorpipe.querydialogs.FilteringColumnDefinition

Check if help is defined for column.

hasCoverage(int) - Method in class gorsat.gtgen.GTGen

Returns whether there is some data for sample with index idx.

hasDeferredValues() - Method in class org.gorpipe.querydialogs.Argument

hasDeferredValues() - Method in class org.gorpipe.querydialogs.argument.QueryArgument

hasDescription() - Method in interface org.gorpipe.querydialogs.FilteringColumnDefinition

Check if the column definition has a description.

hasEmptyFormat() - Method in class org.gorpipe.querydialogs.util.ValueFormatter

Check if value formatter has empty format defined.

hashCode() - Method in class org.gorpipe.querydialogs.factory.ColumnGroup

hasNext() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

hasNext() - Method in class gorsat.BatchedReadSource

hasNext() - Method in class gorsat.process.BaseStreamIterator

hasNext() - Method in class gorsat.process.NordIterator

hasNext() - Method in class gorsat.process.ProcessIteratorAdaptor

hasNext() - Method in class gorsat.process.ProcessRowSource

hasNext() - Method in class gorsat.RowBuffer

hasRequiredColumns() - Method in class org.gorpipe.querydialogs.GridArgument

Check if required columns are defined.

hasShortDescription() - Method in interface org.gorpipe.querydialogs.FilteringColumnDefinition

Check if the column definition has a short description.

header - Variable in class org.gorpipe.gor.function.GorRowQueryFunction

HEADER_BUCKET_DIRS_KEY - Static variable in class org.gorpipe.gor.manager.BucketManager

HEADER_BUCKET_MAX_BUCKETS - Static variable in class org.gorpipe.gor.manager.BucketManager

HEADER_BUCKET_SIZE_KEY - Static variable in class org.gorpipe.gor.manager.BucketManager

HEADER_MIN_BUCKET_SIZE_KEY - Static variable in class org.gorpipe.gor.manager.BucketManager

HEADER_PREFIX - Static variable in class gorsat.process.NorStreamIterator

HelpCmd - Class in org.gorpipe.gorshell

HelpCmd() - Constructor for class org.gorpipe.gorshell.HelpCmd

HelpCommand - Class in org.gorpipe.gor.cli.help

HelpCommand() - Constructor for class org.gorpipe.gor.cli.help.HelpCommand

helpLink - Variable in class org.gorpipe.querydialogs.DialogDescription

HelpOptions - Class in org.gorpipe.gor.cli

HelpOptions() - Constructor for class org.gorpipe.gor.cli.HelpOptions

hessian - Variable in class gorsat.Regression.LogisticRegression

HIDE - Static variable in class org.gorpipe.gor.GorScriptLexer

HIDE - Static variable in class org.gorpipe.gor.GorScriptParser

HIDE() - Method in class org.gorpipe.gor.GorScriptParser.Hide_commandContext

hide_command() - Method in class org.gorpipe.gor.GorScriptParser

hide_command() - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

Hide_commandContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Hide_commandContext

holm_bonferroni(double[], double[]) - Static method in class gorsat.process.StatisticalAdjustment

Runs a Holm-Bonferroni correction on an ordered vector of p values.

HTML - org.gorpipe.querydialogs.factory.Perspective.VIEW_TYPE

Data is displayed with one record per line.

HTML_COL - org.gorpipe.querydialogs.DialogType

A dialog which contains hints on how to render query results

I

IDENTIFIER - Static variable in class org.gorpipe.gor.GorScriptLexer

IDENTIFIER - Static variable in class org.gorpipe.gor.GorScriptParser

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.Column_nameContext

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.Column_rename_ruleContext

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.Function_nameContext

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.Generic_commandContext

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.Macro_nameContext

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.Option_valueContext

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.OptionContext

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.VariableContext

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relation_nameContext

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relationContext

IDENTIFIER(int) - Method in class org.gorpipe.gor.GorScriptParser.Option_valueContext

IF - Static variable in class org.gorpipe.gor.GorScriptLexer

IF - Static variable in class org.gorpipe.gor.GorScriptParser

IF() - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

if_expr() - Method in class org.gorpipe.gor.GorScriptParser.Function_exprContext

if_expr() - Method in class org.gorpipe.gor.GorScriptParser

If_exprContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.If_exprContext

imageColorName - Variable in class org.gorpipe.querydialogs.factory.PerspectiveDialogDisplayParams

The image color for dialog display.

impute(double[], double, int) - Method in class gorsat.gtgen.GTGen

Estimates the allele frequency of the cohort and then computes the genotype probabilities.

IN - Static variable in class org.gorpipe.gor.GorScriptLexer

IN - Static variable in class org.gorpipe.gor.GorScriptParser

IN() - Method in class org.gorpipe.gor.GorScriptParser.In_expressionContext

in_expression() - Method in class org.gorpipe.gor.GorScriptParser

in_expression() - Method in class org.gorpipe.gor.GorScriptParser.PredicateContext

In_expressionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.In_expressionContext

includeDeleted - Variable in class org.gorpipe.gor.cli.manager.FilterOptions

includeProtective - Variable in class org.gorpipe.gor.gava.GavaLogLikelihood

Include protective variants in calculations.

includeProtective - Variable in class org.gorpipe.gor.gava.VariantAssociation

INCOMPATIBLE_GENOTYPES - Static variable in class org.gorpipe.gor.haplotype.GBasicRulesCalculator

Indicates that the genotypes of the trio are incompatible in some way.

INDAG - Static variable in class org.gorpipe.gor.GorScriptLexer

INDAG - Static variable in class org.gorpipe.gor.GorScriptParser

INDAG() - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

indag_expression() - Method in class org.gorpipe.gor.GorScriptParser

indag_expression() - Method in class org.gorpipe.gor.GorScriptParser.PredicateContext

Indag_expressionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

IndexCommand - Class in org.gorpipe.gor.cli.index

IndexCommand() - Constructor for class org.gorpipe.gor.cli.index.IndexCommand

infer(Row, Row) - Method in class org.gorpipe.gor.function.GorRowInferFunction

InfoCommand - Class in org.gorpipe.gor.cli.info

InfoCommand() - Constructor for class org.gorpipe.gor.cli.info.InfoCommand

init() - Method in class gorsat.external.plink.AdjustedGORLine

init(String) - Method in class org.gorpipe.gor.function.GorRowQueryFunction

init(Configuration) - Method in class gorsat.parquet.GorParquetWriteSupport

init(GorSession) - Method in class gorsat.process.NordIterator

init(CommandLine, CommandLine.Help.ColorScheme, PrintWriter, PrintWriter) - Method in class org.gorpipe.gorshell.HelpCmd

initAdaptor() - Method in class org.gorpipe.gor.function.GorRowQueryFunction

initializeGroup() - Method in class org.gorpipe.gor.gava.VariantAssociation

Initialize the algorithm for the next feature.

initializeTempleConfig(FileReader) - Static method in class org.gorpipe.querydialogs.factory.Perspective

initIteratorAndHeader() - Method in class gorsat.process.BaseStreamIterator

initLog(String) - Static method in class org.gorpipe.logging.GorLogbackUtil

initServiceLog() - Static method in class org.gorpipe.logging.GorLogbackUtil

initTable(Path) - Method in class org.gorpipe.gor.manager.TableManager

Initialize the table given by path.

input - Variable in class org.gorpipe.gor.cli.render.RenderOptions

input_source() - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

input_source() - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

input_source() - Method in class org.gorpipe.gor.GorScriptParser

Input_sourceContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Input_sourceContext

inputFileFirstReport - Variable in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

InputsCommand - Class in org.gorpipe.gor.cli.info

InputsCommand() - Constructor for class org.gorpipe.gor.cli.info.InputsCommand

insert(Path, BucketManager.BucketPackLevel, int, BucketableTableEntry...) - Method in class org.gorpipe.gor.manager.TableManager

Insert new data file (partition) into the table.

insert(BaseTable, BucketManager.BucketPackLevel, int, BucketableTableEntry...) - Method in class org.gorpipe.gor.manager.TableManager

Insert new data file (partition) into the table.

InsertCommand - Class in org.gorpipe.gor.cli.manager

InsertCommand() - Constructor for class org.gorpipe.gor.cli.manager.InsertCommand

insertUpdate(DocumentEvent) - Method in class org.gorpipe.jessica.MainWindow

interpolateChart(String) - Method in class org.gorpipe.querydialogs.Dialog

interpolateQuery(String) - Method in class org.gorpipe.querydialogs.Dialog

invalidateCache(String) - Static method in class gorsat.process.GorSessionCacheManager

invert(int[]) - Static method in class gorsat.process.StatisticalAdjustment

Inverts a permutation.

invertUpperTriangular(double[][], double[][], int) - Static method in class gorsat.Regression.LinearAlgebra

Inverts the upper triangular matrix n x n matrix U.

IOTestAnalyser - Class in gorsat

IOTestAnalyser(String, boolean, GorSession) - Constructor for class gorsat.IOTestAnalyser

isAdvanced() - Method in class org.gorpipe.querydialogs.Argument

Get if argument is advanced.

isBuffered() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

isBuffered() - Method in class gorsat.BatchedReadSource

isBuffered() - Method in class gorsat.process.ProcessIteratorAdaptor

isBuffered() - Method in class gorsat.process.ProcessRowSource

isCancelled() - Method in class gorsat.BatchedReadSource

isDefault() - Method in class org.gorpipe.querydialogs.factory.Perspective

Note: no enforcement of only one default perspective

isDone() - Method in class org.gorpipe.gorshell.QueryRunner

isEmpty() - Method in class gorsat.RowBuffer

isEmpty() - Method in class org.gorpipe.querydialogs.Argument

Get if argument is empty.

isEmpty() - Method in class org.gorpipe.querydialogs.argument.StringArgument

isExecutable() - Method in class org.gorpipe.querydialogs.Dialog

isFormula() - Method in class gorsat.process.GorJavaUtilities.CmdParams

isFull() - Method in class gorsat.RowBuffer

isNor() - Method in class gorsat.process.GorJavaUtilities.CmdParams

isOptional() - Method in class org.gorpipe.querydialogs.Argument

Get if argument is optional.

isPredefined - Variable in class org.gorpipe.querydialogs.factory.ColumnGroup

True if the group is predefined and should precede other groups in the view

isSingleSelection() - Method in class org.gorpipe.querydialogs.argument.StringArgument

Check if only single selection is allowed for argument.

isWaiting() - Method in class gorsat.RowBuffer

iterator() - Method in class org.gorpipe.gor.function.ListRowAdaptor

iteratorCreated(String) - Method in class org.gorpipe.gor.RequestStats

iteratorsCreated - Variable in class org.gorpipe.gor.RequestStats

K

KEYWORDS - org.gorpipe.querydialogs.factory.ArgumentContent.Format

Keywords format.

KEYWORDS_FORMAT - Static variable in class org.gorpipe.querydialogs.util.ValueFormatter

L

LAST_POSSIBLE_CHROMOSOME_VALUE - Static variable in class org.gorpipe.gor.GorConstants

LE - Static variable in class org.gorpipe.gor.GorScriptLexer

LE - Static variable in class org.gorpipe.gor.GorScriptParser

LE() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

LETTER - Static variable in class org.gorpipe.gor.GorScriptLexer

LETTER - Static variable in class org.gorpipe.gor.GorScriptParser

LIKE - Static variable in class org.gorpipe.gor.GorScriptLexer

LIKE - Static variable in class org.gorpipe.gor.GorScriptParser

LIKE() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

line - Variable in class org.gorpipe.gor.GorParsingError

LinearAlgebra - Class in gorsat.Regression

LinearRegression - Class in gorsat.Regression

LinearRegression(int, int) - Constructor for class gorsat.Regression.LinearRegression

LIST - org.gorpipe.querydialogs.factory.ArgumentContent.Format

List format.

ListRowAdaptor - Class in org.gorpipe.gor.function

ListRowAdaptor() - Constructor for class org.gorpipe.gor.function.ListRowAdaptor

loadDeferredValues(boolean, Function<String, BufferedReader>) - Method in class org.gorpipe.querydialogs.Argument

Possibly long running, should not be called on the EDT.

loadDeferredValues(boolean, Function<String, BufferedReader>) - Method in class org.gorpipe.querydialogs.argument.QueryArgument

loadQuery(String, String) - Method in class org.gorpipe.querydialogs.Dialog

LocalFileCacheClient - Class in org.gorpipe.gor.clients

Local implementation of file cache client working directly against the file system.

LocalFileCacheClient(Path) - Constructor for class org.gorpipe.gor.clients.LocalFileCacheClient

LocalFileCacheClient(Path, boolean, int) - Constructor for class org.gorpipe.gor.clients.LocalFileCacheClient

Constructs an instance of local file cache.

localHostName - Variable in class org.gorpipe.gor.RequestStats

lockTimeout - Variable in class org.gorpipe.gor.cli.manager.ManagerOptions

lockTimeout(Duration) - Method in class org.gorpipe.gor.manager.BucketManager.Builder

lockTimeout(Duration) - Method in class org.gorpipe.gor.manager.TableManager.Builder

lockType(Class) - Method in class org.gorpipe.gor.manager.BucketManager.Builder

lockType(Class) - Method in class org.gorpipe.gor.manager.TableManager.Builder

LOG_REPORT - org.gorpipe.querydialogs.DialogType

A dialog representing a SDL report query, expecting a base set

LogisticRegression - Class in gorsat.Regression

This program fits a logistic regression model on a given data set.

LogisticRegression(int, int) - Constructor for class gorsat.Regression.LogisticRegression

logServiceStatus(Logger) - Static method in class org.gorpipe.logging.GorLogbackUtil

longRunningQueryTemplate - Variable in class org.gorpipe.querydialogs.Dialog

lookupFile(String) - Method in class org.gorpipe.gor.clients.LocalFileCacheClient

lookupFile(String) - Method in class org.gorpipe.gor.clients.NoCacheFileCacheClient

lr - Variable in class org.gorpipe.gor.function.ListRowAdaptor

lra - Variable in class org.gorpipe.gor.function.GorRowQueryFunction

LsCmd - Class in org.gorpipe.gorshell

LsCmd() - Constructor for class org.gorpipe.gorshell.LsCmd

LT - Static variable in class org.gorpipe.gor.GorScriptLexer

LT - Static variable in class org.gorpipe.gor.GorScriptParser

LT() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

M

macro_name() - Method in class org.gorpipe.gor.GorScriptParser.Def_macroContext

macro_name() - Method in class org.gorpipe.gor.GorScriptParser.Input_sourceContext

macro_name() - Method in class org.gorpipe.gor.GorScriptParser

macro_name() - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

macro_name(int) - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

Macro_nameContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Macro_nameContext

macro_value() - Method in class org.gorpipe.gor.GorScriptParser.Def_macroContext

macro_value() - Method in class org.gorpipe.gor.GorScriptParser

Macro_valueContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Macro_valueContext

MacrosCommand - Class in org.gorpipe.gor.cli.info

MacrosCommand() - Constructor for class org.gorpipe.gor.cli.info.MacrosCommand

main(String[]) - Static method in class org.gorpipe.gor.cli.GorBench

main(String[]) - Static method in class org.gorpipe.gor.cli.GorCLI

main(String[]) - Static method in class org.gorpipe.gor.cli.GorConfigDoc

main(String[]) - Static method in class org.gorpipe.gor.cli.GorMeta

main(String[]) - Static method in class org.gorpipe.gor.manager.TableManagerCLI

Main for gormanager.

main(String[]) - Static method in class org.gorpipe.gor.tools.GorToolsCLI

Main for gortool.

main(String[]) - Static method in class org.gorpipe.gorshell.GorShell

MainWindow - Class in org.gorpipe.jessica

MainWindow(GorQueryHandler) - Constructor for class org.gorpipe.jessica.MainWindow

ManagerCommand - Class in org.gorpipe.gor.cli.manager

ManagerCommand() - Constructor for class org.gorpipe.gor.cli.manager.ManagerCommand

ManagerOptions - Class in org.gorpipe.gor.cli.manager

ManagerOptions() - Constructor for class org.gorpipe.gor.cli.manager.ManagerOptions

MARKER_AUDIT - Static variable in class org.gorpipe.logging.GorLogbackUtil

MARKER_SECURITY - Static variable in class org.gorpipe.logging.GorLogbackUtil

MARKER_SYSTEM - Static variable in class org.gorpipe.logging.GorLogbackUtil

MathArrayUtils - Class in org.gorpipe.gor.gava

Provides various useful functions on arrays.

maximumNumberOfSamples - Variable in class gorsat.Regression.LogisticRegression

mergeArrays(String[], String[]) - Static method in class gorsat.process.GorJavaUtilities

message - Variable in class org.gorpipe.gor.GorParsingError

minBucketSize - Variable in class org.gorpipe.gor.cli.manager.CommandBucketizeOptions

minBucketSize(int) - Method in class org.gorpipe.gor.manager.BucketManager.Builder

minBucketSize(int) - Method in class org.gorpipe.gor.manager.TableManager.Builder

MINUS - Static variable in class org.gorpipe.gor.GorScriptLexer

MINUS - Static variable in class org.gorpipe.gor.GorScriptParser

MINUS() - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

MINUS() - Method in class org.gorpipe.gor.GorScriptParser.Signed_factorContext

MINUS(int) - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

modeNames - Static variable in class org.gorpipe.gor.GorScriptLexer

MultiInsertCommand - Class in org.gorpipe.gor.cli.manager

MultiInsertCommand() - Constructor for class org.gorpipe.gor.cli.manager.MultiInsertCommand

multiLookup(String[], boolean) - Method in class org.gorpipe.gor.clients.LocalFileCacheClient

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaBoolean

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDouble

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDoubleConstant

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaInteger

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaIntegerConstant

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLong

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLongConstant

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaString

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaStringConstant

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaVariable

multiply(double) - Method in class gorsat.parser.CalcLambdaBoolean

multiply(double) - Method in class gorsat.parser.CalcLambdaDouble

multiply(double) - Method in class gorsat.parser.CalcLambdaDoubleConstant

multiply(double) - Method in class gorsat.parser.CalcLambdaInteger

multiply(double) - Method in class gorsat.parser.CalcLambdaIntegerConstant

multiply(double) - Method in class gorsat.parser.CalcLambdaLong

multiply(double) - Method in class gorsat.parser.CalcLambdaLongConstant

multiply(double) - Method in class gorsat.parser.CalcLambdaString

multiply(double) - Method in class gorsat.parser.CalcLambdaStringConstant

multiply(double) - Method in class gorsat.parser.CalcLambdaVariable

multiply(int) - Method in class gorsat.parser.CalcLambdaBoolean

multiply(int) - Method in class gorsat.parser.CalcLambdaDouble

multiply(int) - Method in class gorsat.parser.CalcLambdaDoubleConstant

multiply(int) - Method in class gorsat.parser.CalcLambdaInteger

multiply(int) - Method in class gorsat.parser.CalcLambdaIntegerConstant

multiply(int) - Method in class gorsat.parser.CalcLambdaLong

multiply(int) - Method in class gorsat.parser.CalcLambdaLongConstant

multiply(int) - Method in class gorsat.parser.CalcLambdaString

multiply(int) - Method in class gorsat.parser.CalcLambdaStringConstant

multiply(int) - Method in class gorsat.parser.CalcLambdaVariable

multiply(long) - Method in class gorsat.parser.CalcLambdaBoolean

multiply(long) - Method in class gorsat.parser.CalcLambdaDouble

multiply(long) - Method in class gorsat.parser.CalcLambdaDoubleConstant

multiply(long) - Method in class gorsat.parser.CalcLambdaInteger

multiply(long) - Method in class gorsat.parser.CalcLambdaIntegerConstant

multiply(long) - Method in class gorsat.parser.CalcLambdaLong

multiply(long) - Method in class gorsat.parser.CalcLambdaLongConstant

multiply(long) - Method in class gorsat.parser.CalcLambdaString

multiply(long) - Method in class gorsat.parser.CalcLambdaStringConstant

multiply(long) - Method in class gorsat.parser.CalcLambdaVariable

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaBoolean

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaDouble

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaDoubleConstant

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaInteger

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaIntegerConstant

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaLong

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaLongConstant

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaString

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaStringConstant

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaVariable

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaBoolean

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaDouble

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaDoubleConstant

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaInteger

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaIntegerConstant

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaLong

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaLongConstant

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaString

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaStringConstant

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaVariable

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaBoolean

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaDouble

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaDoubleConstant

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaInteger

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaIntegerConstant

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaLong

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaLongConstant

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaString

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaStringConstant

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaVariable

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaBoolean

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaDouble

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaDoubleConstant

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaInteger

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaIntegerConstant

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaLong

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaLongConstant

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaString

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaStringConstant

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaVariable

N

name - Variable in class org.gorpipe.querydialogs.ArgumentDescription

name - Variable in class org.gorpipe.querydialogs.DialogDescription

Dialog name.

name - Variable in class org.gorpipe.querydialogs.factory.ColumnGroup

Name of this group.

NAN - Static variable in class org.gorpipe.gor.GorScriptLexer

NAN - Static variable in class org.gorpipe.gor.GorScriptParser

NAN() - Method in class org.gorpipe.gor.GorScriptParser.NumberContext

NE - Static variable in class org.gorpipe.gor.GorScriptLexer

NE - Static variable in class org.gorpipe.gor.GorScriptParser

NE() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

negate() - Method in class gorsat.parser.CalcLambdaBoolean

negate() - Method in class gorsat.parser.CalcLambdaDouble

negate() - Method in class gorsat.parser.CalcLambdaDoubleConstant

negate() - Method in class gorsat.parser.CalcLambdaInteger

negate() - Method in class gorsat.parser.CalcLambdaIntegerConstant

negate() - Method in class gorsat.parser.CalcLambdaLong

negate() - Method in class gorsat.parser.CalcLambdaLongConstant

negate() - Method in class gorsat.parser.CalcLambdaString

negate() - Method in class gorsat.parser.CalcLambdaStringConstant

negate() - Method in class gorsat.parser.CalcLambdaVariable

nested_query() - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

nested_query() - Method in class org.gorpipe.gor.GorScriptParser

Nested_queryContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Nested_queryContext

NetworkTemplateLoader - Class in org.gorpipe.querydialogs.templating

NetworkTemplateLoader(String, FileReader) - Constructor for class org.gorpipe.querydialogs.templating.NetworkTemplateLoader

newBuilder() - Static method in class org.gorpipe.gor.manager.TableManager

newBuilder(BaseTable) - Static method in class org.gorpipe.gor.manager.BucketManager

next() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

next() - Method in class gorsat.BatchedReadSource

Make sure hasNext is called before this method

next() - Method in class gorsat.external.plink.AdjustedGORLineIterator

next() - Method in class gorsat.external.plink.GORLine

next() - Method in class gorsat.process.BaseStreamIterator

next() - Method in class gorsat.process.GorStreamIterator

next() - Method in class gorsat.process.NordIterator

next() - Method in class gorsat.process.NorStreamIterator

next() - Method in class gorsat.process.ProcessIteratorAdaptor

next() - Method in class gorsat.process.ProcessRowSource

next() - Method in class gorsat.RowBuffer

next() - Method in class org.gorpipe.gor.gava.CombinationIterator

Advance to the next combination.

nextRowBuffer() - Method in class gorsat.RowBuffer

NO_PACKING - org.gorpipe.gor.manager.BucketManager.BucketPackLevel

NoCacheFileCacheClient - Class in org.gorpipe.gor.clients

Stub implememntation of FileCache, that doesn't do any caching - for running with caching disabled.

NoCacheFileCacheClient(Path) - Constructor for class org.gorpipe.gor.clients.NoCacheFileCacheClient

nodeAddedOrUpdated(GorScriptTask) - Method in class org.gorpipe.gor.RequestStats

nodes - Variable in class org.gorpipe.gor.RequestStats

nohistory - Variable in class org.gorpipe.gor.cli.manager.ManagerOptions

noMaxAlleleCounts - Variable in class org.gorpipe.gor.gava.GavaLogLikelihood

No max allele count for each case in dominant/recessive models.

NOR - Static variable in class org.gorpipe.gor.GorScriptLexer

NOR - Static variable in class org.gorpipe.gor.GorScriptParser

NOR() - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

nor_expression() - Method in class org.gorpipe.gor.GorScriptParser.Gornor_expressionContext

nor_expression() - Method in class org.gorpipe.gor.GorScriptParser

Nor_expressionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

NordIterator - Class in gorsat.process

Iterator to access data from a nor dictionary file.

NordIterator(String, boolean, String[], String, boolean, boolean) - Constructor for class gorsat.process.NordIterator

Nor dictionary constructor.

NordIteratorEntry - Class in gorsat.process

NordIteratorEntry(String, String) - Constructor for class gorsat.process.NordIteratorEntry

NorStreamIterator - Class in gorsat.process

NorStreamIterator(Supplier<Stream<String>>) - Constructor for class gorsat.process.NorStreamIterator

NorToGorPipeStep - Class in gorsat.process

Created by sigmar on 16/08/2016.

NorToGorPipeStep(String) - Constructor for class gorsat.process.NorToGorPipeStep

NOT - Static variable in class org.gorpipe.gor.GorScriptLexer

NOT - Static variable in class org.gorpipe.gor.GorScriptParser

NOT() - Method in class org.gorpipe.gor.GorScriptParser.Not_rel_exprContext

not_rel_expr() - Method in class org.gorpipe.gor.GorScriptParser

not_rel_expr() - Method in class org.gorpipe.gor.GorScriptParser.Predicate_factorContext

Not_rel_exprContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Not_rel_exprContext

number() - Method in class org.gorpipe.gor.GorScriptParser

number() - Method in class org.gorpipe.gor.GorScriptParser.ValueContext

NUMBER - Static variable in class org.gorpipe.gor.GorScriptLexer

NUMBER - Static variable in class org.gorpipe.gor.GorScriptParser

NUMBER - Static variable in class org.gorpipe.querydialogs.ArgumentType

NUMBER() - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

NUMBER() - Method in class org.gorpipe.gor.GorScriptParser.Column_numberContext

NUMBER() - Method in class org.gorpipe.gor.GorScriptParser.Column_rename_ruleContext

NUMBER() - Method in class org.gorpipe.gor.GorScriptParser.NumberContext

NUMBER() - Method in class org.gorpipe.gor.GorScriptParser.Option_valueContext

NUMBER(int) - Method in class org.gorpipe.gor.GorScriptParser.Option_valueContext

NUMBER_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

NumberArgument - Class in org.gorpipe.querydialogs.argument

Represents an argument that expects a numeric value.

NumberArgument(NumberArgument) - Constructor for class org.gorpipe.querydialogs.argument.NumberArgument

Constructor that copies the input number argument.

NumberArgument(ArgumentDescription, Boolean, Object, List<? extends Object>, URI, List<String>, Boolean, Integer, Number, Number, ArgumentType) - Constructor for class org.gorpipe.querydialogs.argument.NumberArgument

NumberArgumentBuilder - Class in org.gorpipe.querydialogs.factory.builder

Responsible for building number arguments.

NumberArgumentBuilder(FileReader) - Constructor for class org.gorpipe.querydialogs.factory.builder.NumberArgumentBuilder

NumberContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.NumberContext

numberOfDepVars - Variable in class gorsat.Regression.LogisticRegression

numberOfIterations - Variable in class gorsat.Regression.LogisticRegression

numberOfSamples - Variable in class gorsat.Regression.LogisticRegression

numCases - Variable in class org.gorpipe.gor.gava.GavaLogLikelihood

numchar2Genotype - Static variable in class gorsat.process.GenotypeLookupUtilities

numControls - Variable in class org.gorpipe.gor.gava.GavaLogLikelihood

O

oneOver - Variable in class gorsat.Regression.LogisticRegression

OPEN_BRACE - Static variable in class org.gorpipe.gor.GorScriptLexer

OPEN_BRACE - Static variable in class org.gorpipe.gor.GorScriptParser

OPEN_PAREN - Static variable in class org.gorpipe.gor.GorScriptLexer

OPEN_PAREN - Static variable in class org.gorpipe.gor.GorScriptParser

OPEN_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

OPEN_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

OPEN_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

OPEN_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Paren_exprContext

OPEN_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Paren_rel_exprContext

OPEN_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.String_literal_listContext

option() - Method in class org.gorpipe.gor.GorScriptParser

option() - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

option(int) - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

option_value() - Method in class org.gorpipe.gor.GorScriptParser

option_value() - Method in class org.gorpipe.gor.GorScriptParser.OptionContext

OPTION_VALUE - Static variable in class org.gorpipe.gor.GorScriptLexer

OPTION_VALUE - Static variable in class org.gorpipe.gor.GorScriptParser

Option_valueContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Option_valueContext

optional_power_factor() - Method in class org.gorpipe.gor.GorScriptParser

optional_power_factor() - Method in class org.gorpipe.gor.GorScriptParser.TermContext

optional_power_factor(int) - Method in class org.gorpipe.gor.GorScriptParser.TermContext

Optional_power_factorContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Optional_power_factorContext

OptionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.OptionContext

OptionEvaluator - Class in gorsat.process

OptionEvaluator(GorContext) - Constructor for class gorsat.process.OptionEvaluator

options_and_args() - Method in class org.gorpipe.gor.GorScriptParser.Generic_commandContext

options_and_args() - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

options_and_args() - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

options_and_args() - Method in class org.gorpipe.gor.GorScriptParser

options_and_args() - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

Options_and_argsContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

OR - Static variable in class org.gorpipe.gor.GorScriptLexer

OR - Static variable in class org.gorpipe.gor.GorScriptParser

OR() - Method in class org.gorpipe.gor.GorScriptParser.Rel_exprContext

OR(int) - Method in class org.gorpipe.gor.GorScriptParser.Rel_exprContext

order - Variable in class org.gorpipe.querydialogs.factory.ColumnGroup

For groups that are predefined, this is the ranking between them.

ordinal() - Method in class org.gorpipe.querydialogs.ArgumentType

org.gorpipe.gor - package org.gorpipe.gor

org.gorpipe.gor.cli - package org.gorpipe.gor.cli

org.gorpipe.gor.cli.cache - package org.gorpipe.gor.cli.cache

org.gorpipe.gor.cli.help - package org.gorpipe.gor.cli.help

org.gorpipe.gor.cli.index - package org.gorpipe.gor.cli.index

org.gorpipe.gor.cli.info - package org.gorpipe.gor.cli.info

org.gorpipe.gor.cli.manager - package org.gorpipe.gor.cli.manager

org.gorpipe.gor.cli.query - package org.gorpipe.gor.cli.query

org.gorpipe.gor.cli.render - package org.gorpipe.gor.cli.render

org.gorpipe.gor.clients - package org.gorpipe.gor.clients

org.gorpipe.gor.function - package org.gorpipe.gor.function

org.gorpipe.gor.gava - package org.gorpipe.gor.gava

org.gorpipe.gor.haplotype - package org.gorpipe.gor.haplotype

org.gorpipe.gor.manager - package org.gorpipe.gor.manager

org.gorpipe.gor.tools - package org.gorpipe.gor.tools

org.gorpipe.gor.util - package org.gorpipe.gor.util

org.gorpipe.gorshell - package org.gorpipe.gorshell

org.gorpipe.jessica - package org.gorpipe.jessica

org.gorpipe.logging - package org.gorpipe.logging

org.gorpipe.querydialogs - package org.gorpipe.querydialogs

org.gorpipe.querydialogs.argument - package org.gorpipe.querydialogs.argument

org.gorpipe.querydialogs.factory - package org.gorpipe.querydialogs.factory

org.gorpipe.querydialogs.factory.builder - package org.gorpipe.querydialogs.factory.builder

org.gorpipe.querydialogs.templating - package org.gorpipe.querydialogs.templating

org.gorpipe.querydialogs.util - package org.gorpipe.querydialogs.util

OTHER_DIALOG_CATEGORY - Static variable in class org.gorpipe.querydialogs.factory.PerspectiveDialogFactory

Group used for dialogs where dialog group attribute is not defined

P

packageVersion - Variable in class org.gorpipe.querydialogs.Dialog

parallelExecute() - Method in class gorsat.process.ParallelExecutor

ParallelExecutor - Class in gorsat.process

This class encapsulates a general execution in parallel of the pgor command when a standard parallel query handler is not used.

ParallelExecutor(int, Function0<Unit>[]) - Constructor for class gorsat.process.ParallelExecutor

paren_expr() - Method in class org.gorpipe.gor.GorScriptParser

paren_expr() - Method in class org.gorpipe.gor.GorScriptParser.XfactorContext

Paren_exprContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Paren_exprContext

paren_rel_expr() - Method in class org.gorpipe.gor.GorScriptParser

paren_rel_expr() - Method in class org.gorpipe.gor.GorScriptParser.Predicate_factorContext

Paren_rel_exprContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Paren_rel_exprContext

pArray - Static variable in class gorsat.process.GorJavaUtilities

parse() - Method in interface org.gorpipe.jessica.GorQueryHandler

parse(String) - Method in class gorsat.process.FreemarkerReportBuilder

parse(String) - Static method in class gorsat.process.NordIteratorEntry

parse(String) - Method in class org.gorpipe.gor.SyntaxChecker

parseCalc(String) - Method in class org.gorpipe.gor.SyntaxChecker

parseContent(String) - Static method in class org.gorpipe.querydialogs.factory.ArgumentContent

Parse content string.

parseDouble(CharSequence, int, int) - Static method in class gorsat.gtgen.GPParser

Parses a double from a subsequence of a character sequence.

parseDoubleTriplet(CharSequence, char) - Static method in class gorsat.gtgen.GPParser

The method does not do any validations so the the functionality is undefined if the input is bad.

parseFilter(String) - Method in class org.gorpipe.gor.SyntaxChecker

parseInt(CharSequence, int, int) - Static method in class gorsat.gtgen.GPParser

Parses an integer from a subsequence of a character sequence.

parseIntTriplet(CharSequence, char) - Static method in class gorsat.gtgen.GPParser

The method does not do any validations so the the functionality is undefined if the input is bad.

parseValue(String) - Method in class org.gorpipe.querydialogs.argument.DateArgument

parseValue(String) - Method in class org.gorpipe.querydialogs.argument.NumberArgument

parseValue(String) - Method in class org.gorpipe.querydialogs.Argument

path2LoadedValues - Static variable in class org.gorpipe.querydialogs.Argument

path2LoadedValuesHeader - Static variable in class org.gorpipe.querydialogs.Argument

Perspective - Class in org.gorpipe.querydialogs.factory

Represents a particular perspective onto data returned from a dialog query.

Perspective(String, String, String, Boolean, String, String, List<Object>, List<Object>) - Constructor for class org.gorpipe.querydialogs.factory.Perspective

Perspective(Perspective) - Constructor for class org.gorpipe.querydialogs.factory.Perspective

Constructor that copies the input perspective.

Perspective.VIEW_TYPE - Enum in org.gorpipe.querydialogs.factory

Defines the type of view that should be selected by default when the perspective is activated.

PerspectiveDialog - Class in org.gorpipe.querydialogs.factory

PerspectiveDialog(Map<String, ? extends Object>, FileReader, QueryEvaluator, DialogDescription, PerspectiveDialogDisplayParams, DialogType, String, String, String, String, ChartDataType, List<Argument>, String, List<? extends Object>, List<Perspective>, List<ColumnGroup>, List<ReportCommand>, String, String, String, String, String, String) - Constructor for class org.gorpipe.querydialogs.factory.PerspectiveDialog

PerspectiveDialog(PerspectiveDialog) - Constructor for class org.gorpipe.querydialogs.factory.PerspectiveDialog

PerspectiveDialogDisplayParams - Class in org.gorpipe.querydialogs.factory

Class for defining a perspective dialog display parameters.

PerspectiveDialogDisplayParams(String, String) - Constructor for class org.gorpipe.querydialogs.factory.PerspectiveDialogDisplayParams

Constructor.

PerspectiveDialogFactory - Class in org.gorpipe.querydialogs.factory

PerspectiveDialogFactory(FileReader, QueryEvaluator) - Constructor for class org.gorpipe.querydialogs.factory.PerspectiveDialogFactory

PGOR - Static variable in class org.gorpipe.gor.GorScriptLexer

PGOR - Static variable in class org.gorpipe.gor.GorScriptParser

PGOR() - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

pgor_expression() - Method in class org.gorpipe.gor.GorScriptParser.Gornor_expressionContext

pgor_expression() - Method in class org.gorpipe.gor.GorScriptParser

Pgor_expressionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

pickBucketDir() - Method in class org.gorpipe.gor.manager.BucketManager

Pick a bucket dir from a list.

PIPE - Static variable in class org.gorpipe.gor.GorScriptLexer

PIPE - Static variable in class org.gorpipe.gor.GorScriptParser

PIPE() - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

PIPE() - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

PIPE() - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

PIPE(int) - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

PIPE(int) - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

PIPE(int) - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

pipe_command() - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

pipe_command() - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

pipe_command() - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

pipe_command() - Method in class org.gorpipe.gor.GorScriptParser

pipe_command(int) - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

pipe_command(int) - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

pipe_command(int) - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

Pipe_commandContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

PLAINTEXT - org.gorpipe.querydialogs.ChartDataType

PlinkAdjustAdaptor - Class in gorsat.external.plink

This analysis class collects gor or vcf lines and writes them in batches to a temporary vcf files read by plink2 process

PlinkAdjustAdaptor(String, boolean) - Constructor for class gorsat.external.plink.PlinkAdjustAdaptor

PlinkAdjustAdaptor(String, String, boolean) - Constructor for class gorsat.external.plink.PlinkAdjustAdaptor

PlinkAdjustment - Class in gorsat.external.plink

PlinkAdjustment(String[], Path, String, String, String, boolean) - Constructor for class gorsat.external.plink.PlinkAdjustment

PlinkArguments - Class in gorsat.external.plink

This class stores the phenotype file for plink vcf input header generation Also the argument to the plink external process

PlinkArguments(String, String, boolean, boolean, boolean, boolean, boolean, boolean, boolean, float, float, float) - Constructor for class gorsat.external.plink.PlinkArguments

PlinkProcessAdaptor - Class in gorsat.external.plink

This analysis class collects gor or vcf lines and writes them in batches to a temporary vcf files read by plink2 process

PlinkProcessAdaptor(GorSession, PlinkArguments, int, int, int, int, boolean, float, boolean, String) - Constructor for class gorsat.external.plink.PlinkProcessAdaptor

PlinkVcfProcessAdaptor - Class in gorsat.external.plink

This analysis class collects gor or vcf lines and writes them in batches to a temporary vcf files read by plink2 process

PlinkVcfProcessAdaptor(GorSession, PlinkArguments, int, int, int, int, boolean, float, boolean, String, String) - Constructor for class gorsat.external.plink.PlinkVcfProcessAdaptor

plToGp(CharSequence, char) - Static method in class gorsat.gtgen.GPParser

PLUS - Static variable in class org.gorpipe.gor.GorScriptLexer

PLUS - Static variable in class org.gorpipe.gor.GorScriptParser

PLUS() - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

PLUS() - Method in class org.gorpipe.gor.GorScriptParser.Signed_factorContext

PLUS(int) - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

PN_LISTS - Static variable in class org.gorpipe.querydialogs.ArgumentType

PN_LISTS_ENTRIES - Static variable in class org.gorpipe.querydialogs.ArgumentType

PN_LISTS_ENTRIES_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

PN_LISTS_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

pop() - Method in class gorsat.RowBuffer

pos - Variable in class org.gorpipe.gor.GorParsingError

POSITION_RANGE - Static variable in class org.gorpipe.querydialogs.ArgumentType

POSITION_RANGE_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

PositionCacheCmd - Class in org.gorpipe.gorshell

PositionCacheCmd() - Constructor for class org.gorpipe.gorshell.PositionCacheCmd

pow(double, int) - Static method in class gorsat.gtgen.PowerLookupTable

Computes x^n, n ≥ 0.

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaBoolean

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDouble

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDoubleConstant

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaInteger

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaIntegerConstant

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLong

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLongConstant

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaString

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaStringConstant

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaVariable

POW - Static variable in class org.gorpipe.gor.GorScriptLexer

POW - Static variable in class org.gorpipe.gor.GorScriptParser

POW() - Method in class org.gorpipe.gor.GorScriptParser.Power_factorContext

power_factor() - Method in class org.gorpipe.gor.GorScriptParser.Optional_power_factorContext

power_factor() - Method in class org.gorpipe.gor.GorScriptParser

Power_factorContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Power_factorContext

PowerLookupTable - Class in gorsat.gtgen

prArray - Static variable in class gorsat.process.GorJavaUtilities

predicate() - Method in class org.gorpipe.gor.GorScriptParser

predicate() - Method in class org.gorpipe.gor.GorScriptParser.Predicate_factorContext

predicate_factor() - Method in class org.gorpipe.gor.GorScriptParser

predicate_factor() - Method in class org.gorpipe.gor.GorScriptParser.Rel_termContext

predicate_factor(int) - Method in class org.gorpipe.gor.GorScriptParser.Rel_termContext

Predicate_factorContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Predicate_factorContext

PredicateContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.PredicateContext

prepareForWrite(RecordConsumer) - Method in class gorsat.parquet.GorParquetWriteSupport

pretty - Variable in class org.gorpipe.gor.cli.render.RenderOptions

print(BaseTable.TableFilter) - Method in class org.gorpipe.gor.manager.TableManager

process(Row) - Method in class gorsat.external.plink.PlinkAdjustAdaptor

process(Row) - Method in class gorsat.external.plink.PlinkProcessAdaptor

process(Row) - Method in class gorsat.IOTestAnalyser

process(Row) - Method in class gorsat.parquet.GorParquetFileOut

process(Row) - Method in class gorsat.process.NorToGorPipeStep

process(Row) - Method in class org.gorpipe.gor.function.ListRowAdaptor

ProcessIteratorAdaptor - Class in gorsat.process

Created by sigmar on 03/11/15.

ProcessIteratorAdaptor(GorContext, String, String, Iterator<Row>, Analysis, String, boolean, Optional<String>, boolean, boolean) - Constructor for class gorsat.process.ProcessIteratorAdaptor

ProcessRowSource - Class in gorsat.process

Created by sigmar on 12/02/16.

ProcessRowSource(String, String, boolean, GorSession, GenomicRange.Range, String) - Constructor for class gorsat.process.ProcessRowSource

ProcessRowSource(String, String, boolean, GorSession, GenomicRange.Range, String, int) - Constructor for class gorsat.process.ProcessRowSource

ProcessSource - Class in gorsat.process

Created by sigmar on 12/02/16.

ProcessSource() - Constructor for class gorsat.process.ProcessSource

prod - Variable in class gorsat.Regression.LogisticRegression

produceHeaderFromData() - Method in class gorsat.process.BaseStreamIterator

projectDataReplacement(String, String) - Static method in class gorsat.process.GorJavaUtilities

projectReplacement(String, String, String, String) - Static method in class gorsat.process.GorJavaUtilities

projectReplacement(String, GorSession) - Static method in class gorsat.process.GorJavaUtilities

PROPERTY_BASE_CHARTCOLUMNS - Static variable in class org.gorpipe.querydialogs.Dialog

The property name for the dialog's base query (not interpolated).

PROPERTY_BASE_CHARTDF - Static variable in class org.gorpipe.querydialogs.Dialog

The property name for dialog's interpolated query (read only).

PROPERTY_BASE_CHARTEXEC - Static variable in class org.gorpipe.querydialogs.Dialog

The property name for the dialog's base query (not interpolated).

PROPERTY_BASE_CHARTSCRIPT - Static variable in class org.gorpipe.querydialogs.Dialog

The property name for the dialog's base query (not interpolated).

PROPERTY_BASE_QUERY - Static variable in class org.gorpipe.querydialogs.Dialog

The property name for the dialog's base query (not interpolated).

PROPERTY_CHART - Static variable in class org.gorpipe.querydialogs.Dialog

The property name for dialog's interpolated query (read only).

PROPERTY_DATE_VALUE - Static variable in class org.gorpipe.querydialogs.argument.DateArgument

The property name for the argument's date value.

PROPERTY_EXECUTABLE - Static variable in class org.gorpipe.querydialogs.Dialog

The property name for the dialog's executable state.

PROPERTY_HTML_TEMPLATE - Static variable in class org.gorpipe.querydialogs.factory.PerspectiveDialog

PROPERTY_NUMBER_VALUE - Static variable in class org.gorpipe.querydialogs.argument.NumberArgument

The property name for the argument's numeric value.

PROPERTY_OPERATOR - Static variable in class org.gorpipe.querydialogs.Argument

The property name for the argument's current operator.

PROPERTY_QUERY - Static variable in class org.gorpipe.querydialogs.Dialog

The property name for dialog's interpolated query (read only).

PROPERTY_TYPE - Static variable in class org.gorpipe.querydialogs.Dialog

The property name for the dialog's type.

PROPERTY_VALUE - Static variable in class org.gorpipe.querydialogs.Argument

The property name for the argument's raw value.

prprFunction - Static variable in class gorsat.process.GorJavaUtilities

prprprFunction - Static variable in class gorsat.process.GorJavaUtilities

PurgeCommand - Class in org.gorpipe.gor.cli.cache

PurgeCommand() - Constructor for class org.gorpipe.gor.cli.cache.PurgeCommand

pValues - Variable in class gorsat.Regression.LinearRegression

pValues - Variable in class gorsat.Regression.LogisticRegression

PwdCmd - Class in org.gorpipe.gorshell

PwdCmd() - Constructor for class org.gorpipe.gorshell.PwdCmd

Q

QRFactorize(double[][], double[], int) - Static method in class gorsat.Regression.LinearAlgebra

QR decomposes X.

query - Variable in class org.gorpipe.gor.RequestStats

query(String) - Method in class org.gorpipe.gor.RequestStats

QUERY - Static variable in class org.gorpipe.querydialogs.ArgumentType

query_expression() - Method in class org.gorpipe.gor.GorScriptParser.Create_statementContext

query_expression() - Method in class org.gorpipe.gor.GorScriptParser

query_expression() - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

Query_expressionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Query_expressionContext

QUERY_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

For creating a selection dialog from a nor/gor query

QueryArgument - Class in org.gorpipe.querydialogs.argument

Represents an argument that uses a gor/nor query to create the values the user can select from.

QueryArgument(QueryArgument) - Constructor for class org.gorpipe.querydialogs.argument.QueryArgument

QueryArgument(ArgumentDescription, Boolean, Object, String, List<String>, Boolean, Integer, QueryEvaluator) - Constructor for class org.gorpipe.querydialogs.argument.QueryArgument

QueryArgumentBuilder - Class in org.gorpipe.querydialogs.factory.builder

Responsible for building GOR/NOR query arguments.

QueryArgumentBuilder(FileReader, QueryEvaluator) - Constructor for class org.gorpipe.querydialogs.factory.builder.QueryArgumentBuilder

QueryCommand - Class in org.gorpipe.gor.cli.query

QueryCommand() - Constructor for class org.gorpipe.gor.cli.query.QueryCommand

QueryEvalMethodModel - Class in org.gorpipe.querydialogs.templating

QueryEvalMethodModel(QueryEvaluator) - Constructor for class org.gorpipe.querydialogs.templating.QueryEvalMethodModel

QueryRunner - Class in org.gorpipe.gorshell

R

range - Variable in class org.gorpipe.gor.cli.manager.FilterOptions

RangedNumberFormatter - Class in org.gorpipe.querydialogs

A number formatter that can constrain values to a minimum and/or maximum value.

RangedNumberFormatter(Double, Double) - Constructor for class org.gorpipe.querydialogs.RangedNumberFormatter

readWhiteList(String) - Static method in class gorsat.process.GorJavaUtilities

readWhiteList(Path) - Static method in class gorsat.process.GorJavaUtilities

RecessiveLogLikelihood - Class in org.gorpipe.gor.gava

Log likelihood calculator for recessive variant association.

RecessiveLogLikelihood() - Constructor for class org.gorpipe.gor.gava.RecessiveLogLikelihood

reduce(int) - Method in class gorsat.RowBuffer

registerArgumentBuilder(ArgumentType, ArgumentBuilder) - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

Registers an ArgumentBuilder to use for the given ArgumentType.

RegularLogLikelihood - Class in org.gorpipe.gor.gava

Log likelihood calculator for regular variant association.

RegularLogLikelihood() - Constructor for class org.gorpipe.gor.gava.RegularLogLikelihood

rel_expr() - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

rel_expr() - Method in class org.gorpipe.gor.GorScriptParser.Not_rel_exprContext

rel_expr() - Method in class org.gorpipe.gor.GorScriptParser.Paren_rel_exprContext

rel_expr() - Method in class org.gorpipe.gor.GorScriptParser

rel_expr() - Method in class org.gorpipe.gor.GorScriptParser.Where_commandContext

Rel_exprContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Rel_exprContext

rel_term() - Method in class org.gorpipe.gor.GorScriptParser.Rel_exprContext

rel_term() - Method in class org.gorpipe.gor.GorScriptParser

rel_term(int) - Method in class org.gorpipe.gor.GorScriptParser.Rel_exprContext

Rel_termContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Rel_termContext

remove() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

removeListDataListener(ListDataListener) - Method in class org.gorpipe.querydialogs.AbstractListBean

removePropertyChangeListener(PropertyChangeListener) - Method in class org.gorpipe.querydialogs.BasicBean

Removes a PropertyChangeListener from the listener list.

removePropertyChangeListener(String, PropertyChangeListener) - Method in class org.gorpipe.querydialogs.BasicBean

Removes a PropertyChangeListener from the listener list for a specific property.

removeUpdate(DocumentEvent) - Method in class org.gorpipe.jessica.MainWindow

RENAME - Static variable in class org.gorpipe.gor.GorScriptLexer

RENAME - Static variable in class org.gorpipe.gor.GorScriptParser

RENAME() - Method in class org.gorpipe.gor.GorScriptParser.Rename_commandContext

rename_command() - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

rename_command() - Method in class org.gorpipe.gor.GorScriptParser

Rename_commandContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Rename_commandContext

RenderCommand - Class in org.gorpipe.gor.cli.render

RenderCommand() - Constructor for class org.gorpipe.gor.cli.render.RenderCommand

RenderOptions - Class in org.gorpipe.gor.cli.render

RenderOptions() - Constructor for class org.gorpipe.gor.cli.render.RenderOptions

REPLACE - Static variable in class org.gorpipe.gor.GorScriptLexer

REPLACE - Static variable in class org.gorpipe.gor.GorScriptParser

REPLACE() - Method in class org.gorpipe.gor.GorScriptParser.Function_nameContext

REPLACE() - Method in class org.gorpipe.gor.GorScriptParser.Replace_commandContext

replace_command() - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

replace_command() - Method in class org.gorpipe.gor.GorScriptParser

Replace_commandContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Replace_commandContext

report(PrintStream) - Method in class org.gorpipe.gor.cli.GorMeta

REPORT - org.gorpipe.querydialogs.DialogType

A dialog representing a SDL report query (EVR)

ReportCommand - Class in org.gorpipe.gor.cli.render

ReportCommand() - Constructor for class org.gorpipe.gor.cli.render.ReportCommand

ReportViewer - Interface in org.gorpipe.querydialogs.factory

Report container is implemented by viewmanagers that will display Reports created from Report Forms.

requestQuery(String, FileReader, QueryEvaluator, String, Map<String, String>, String) - Static method in class gorsat.FreemarkerQueryUtilities

Returns a gor query from the input resource file.

RequestStats - Class in org.gorpipe.gor

RequestStats() - Constructor for class org.gorpipe.gorshell.SetCmd.RequestStats

RequestStats(GorSession) - Constructor for class org.gorpipe.gor.RequestStats

requestStatsEnabled - Variable in class org.gorpipe.gorshell.GorShell.Settings

requiredColumns - Variable in class org.gorpipe.querydialogs.GridArgument

Grid required columns.

requiredColumnsOnly - Variable in class org.gorpipe.querydialogs.GridArgument

Defines if only required columns may exist in grid.

reset() - Method in class gorsat.gtgen.GTGen

Resets the object.

reset() - Method in class org.gorpipe.querydialogs.templating.SkipFirstMethodModel

resolveWhiteListFilePath(String, Path) - Static method in class gorsat.process.GorJavaUtilities

Helper method to resolve whitelist file path (from config file) to full path.

RLIKE - Static variable in class org.gorpipe.gor.GorScriptLexer

RLIKE - Static variable in class org.gorpipe.gor.GorScriptParser

RLIKE() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

RowBuffer - Class in gorsat

An array of GOR row objects implementing iterator interface The user class, BatchedReadSource, ensures thread safety

RowBuffer() - Constructor for class gorsat.RowBuffer

RowBuffer(int) - Constructor for class gorsat.RowBuffer

RowBuffer(int, int, RowBuffer) - Constructor for class gorsat.RowBuffer

RowBuffer(int, RowBuffer) - Constructor for class gorsat.RowBuffer

RowBuffer(RowBuffer) - Constructor for class gorsat.RowBuffer

ROWMODEL - org.gorpipe.querydialogs.ChartDataType

RULE_argument - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_calc_command - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_calc_expression - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_calc_expression_list - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_column_list - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_column_name - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_column_number - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_column_range - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_column_ref - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_column_rename_rule - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_column_selection - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_column_wildcard - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_compare_expressions - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_create_statement - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_def_macro - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_expression - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_factor - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_filename - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_function_call - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_function_expr - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_function_name - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_generic_command - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_gor_expression - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_gornor_expression - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_hide_command - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_if_expr - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_in_expression - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_indag_expression - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_input_source - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_macro_name - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_macro_value - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_nested_query - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_nor_expression - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_not_rel_expr - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_number - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_option - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_option_value - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_optional_power_factor - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_options_and_args - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_paren_expr - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_paren_rel_expr - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_pgor_expression - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_pipe_command - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_power_factor - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_predicate - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_predicate_factor - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_query_expression - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_rel_expr - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_rel_term - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_rename_command - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_replace_command - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_script - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_select_command - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_signed_factor - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_string_literal - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_string_literal_list - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_term - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_value - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_variable - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_virtual_relation - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_virtual_relation_name - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_where_command - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_xfactor - Static variable in class org.gorpipe.gor.GorScriptParser

ruleNames - Static variable in class org.gorpipe.gor.GorScriptLexer

ruleNames - Static variable in class org.gorpipe.gor.GorScriptParser

run() - Method in class org.gorpipe.gor.cli.cache.CacheCommand

run() - Method in class org.gorpipe.gor.cli.cache.PurgeCommand

run() - Method in class org.gorpipe.gor.cli.cache.TouchCommand

run() - Method in class org.gorpipe.gor.cli.GorBench

run() - Method in class org.gorpipe.gor.cli.GorCLI

run() - Method in class org.gorpipe.gor.cli.help.HelpCommand

run() - Method in class org.gorpipe.gor.cli.index.IndexCommand

run() - Method in class org.gorpipe.gor.cli.info.CommandsCommand

run() - Method in class org.gorpipe.gor.cli.info.InfoCommand

run() - Method in class org.gorpipe.gor.cli.info.InputsCommand

run() - Method in class org.gorpipe.gor.cli.info.MacrosCommand

run() - Method in class org.gorpipe.gor.cli.manager.BucketizeCommand

run() - Method in class org.gorpipe.gor.cli.manager.DeleteBucketCommand

run() - Method in class org.gorpipe.gor.cli.manager.DeleteCommand

run() - Method in class org.gorpipe.gor.cli.manager.InsertCommand

run() - Method in class org.gorpipe.gor.cli.manager.ManagerCommand

run() - Method in class org.gorpipe.gor.cli.manager.MultiInsertCommand

run() - Method in class org.gorpipe.gor.cli.manager.SelectCommand

run() - Method in class org.gorpipe.gor.cli.manager.TestCommand

run() - Method in class org.gorpipe.gor.cli.manager.TestIsLockCommand

run() - Method in class org.gorpipe.gor.cli.manager.TestReadLockCommand

run() - Method in class org.gorpipe.gor.cli.manager.TestWriteLockCommand

run() - Method in class org.gorpipe.gor.cli.query.QueryCommand

run() - Method in class org.gorpipe.gor.cli.render.RenderCommand

run() - Method in class org.gorpipe.gor.cli.render.ReportCommand

run() - Method in class org.gorpipe.gor.cli.render.ScriptCommand

run() - Method in class org.gorpipe.gorshell.BashCmd

run() - Method in class org.gorpipe.gorshell.CdCmd

run() - Method in class org.gorpipe.gorshell.Commands

run() - Method in class org.gorpipe.gorshell.CreateCmd

run() - Method in class org.gorpipe.gorshell.DefCmd

run() - Method in class org.gorpipe.gorshell.ExitCmd

run() - Method in class org.gorpipe.gorshell.HelpCmd

run() - Method in class org.gorpipe.gorshell.LsCmd

run() - Method in class org.gorpipe.gorshell.PositionCacheCmd

run() - Method in class org.gorpipe.gorshell.PwdCmd

run() - Method in class org.gorpipe.gorshell.QueryRunner

run() - Method in class org.gorpipe.gorshell.ScriptCmd

run() - Method in class org.gorpipe.gorshell.SetCmd.ConfigFile

run() - Method in class org.gorpipe.gorshell.SetCmd.DisplayResults

run() - Method in class org.gorpipe.gorshell.SetCmd.RequestStats

run() - Method in class org.gorpipe.gorshell.SetCmd

run() - Method in class org.gorpipe.gorshell.SetCmd.Timing

run() - Method in interface org.gorpipe.jessica.GorQueryHandler

run(RowSource, Processor) - Method in class gorsat.process.GenericGorRunner

runCLI(String...) - Static method in class org.gorpipe.gor.tools.GorToolsCLI

runRegression(double[]) - Method in class gorsat.Regression.LinearRegression

runRegression(double[][], boolean[], int, double, int) - Method in class gorsat.Regression.LogisticRegression

S

S_EQ - Static variable in class org.gorpipe.gor.GorScriptLexer

S_EQ - Static variable in class org.gorpipe.gor.GorScriptParser

S_EQ() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

safeString(Object) - Static method in class org.gorpipe.querydialogs.factory.ArgumentBuilder

save(BaseTable, BucketManager.BucketPackLevel, int) - Method in class org.gorpipe.gor.manager.TableManager

Save the given table.

saveArgumentValues(Path) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

saveToJson() - Method in class org.gorpipe.gor.RequestStats

script() - Method in class org.gorpipe.gor.GorScriptParser

ScriptCmd - Class in org.gorpipe.gorshell

ScriptCmd() - Constructor for class org.gorpipe.gorshell.ScriptCmd

ScriptCommand - Class in org.gorpipe.gor.cli.render

ScriptCommand() - Constructor for class org.gorpipe.gor.cli.render.ScriptCommand

ScriptContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.ScriptContext

securityContext(String) - Method in class org.gorpipe.gor.manager.TableManager.Builder

seekReplacement(String, String, int, int) - Static method in class gorsat.process.GorJavaUtilities

select(Path, String[], String[], String[], String[], String, boolean) - Method in class org.gorpipe.gor.manager.TableManager

Select entries from the table.

SELECT - Static variable in class org.gorpipe.gor.GorScriptLexer

SELECT - Static variable in class org.gorpipe.gor.GorScriptParser

SELECT() - Method in class org.gorpipe.gor.GorScriptParser.Select_commandContext

select_command() - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

select_command() - Method in class org.gorpipe.gor.GorScriptParser

Select_commandContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Select_commandContext

selectAll(Path) - Method in class org.gorpipe.gor.manager.TableManager

Select all entries from table.

SelectCommand - Class in org.gorpipe.gor.cli.manager

SelectCommand() - Constructor for class org.gorpipe.gor.cli.manager.SelectCommand

self() - Method in class gorsat.parquet.GorParquetWriter.GorParquetBuilder

semanticCheck() - Method in class org.gorpipe.gor.GorScriptAnalyzer

SemanticChecker - Class in org.gorpipe.gor

SemanticChecker() - Constructor for class org.gorpipe.gor.SemanticChecker

session - Variable in class org.gorpipe.gor.RequestStats

SessionBasedQueryEvaluator - Class in gorsat.process

SessionBasedQueryEvaluator(GorSession) - Constructor for class gorsat.process.SessionBasedQueryEvaluator

SET - org.gorpipe.querydialogs.DialogType

A dialog representing a SDL set query

setAdvancedArgumentsVisible(boolean) - Method in class org.gorpipe.querydialogs.Dialog

setAF(double) - Method in class gorsat.gtgen.GTGen

Sets the allele frequency which we are assuming to have been used when computing the given triplets.

setArgument(String, Argument) - Method in class org.gorpipe.querydialogs.Dialog

setArgumentMap(Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.Perspective

Set the perspective argument map.

setArgumentValues(Path) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Read argument values from file and set.

setArgumentValues(Map<String, ArgumentContent>) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Set values for arguments.

setBaseChartColumns(String) - Method in class org.gorpipe.querydialogs.Dialog

setBaseChartDF(ChartDataType) - Method in class org.gorpipe.querydialogs.Dialog

setBaseChartExec(String) - Method in class org.gorpipe.querydialogs.Dialog

setBaseChartScript(String) - Method in class org.gorpipe.querydialogs.Dialog

setBaseQuery(String) - Method in class org.gorpipe.querydialogs.Dialog

setBucketDirs(List<Path>) - Method in class org.gorpipe.gor.manager.BucketManager

Set the bucket dir list.

setBucketSize(int) - Method in class org.gorpipe.gor.manager.BucketManager

setBucketSize(int) - Method in class org.gorpipe.gor.manager.TableManager

Set the bucket size.

setCancelMonitor(CancelMonitor) - Method in class org.gorpipe.gor.gava.VariantAssociation

SetCmd - Class in org.gorpipe.gorshell

SetCmd() - Constructor for class org.gorpipe.gorshell.SetCmd

SetCmd.ConfigFile - Class in org.gorpipe.gorshell

SetCmd.DisplayResults - Class in org.gorpipe.gorshell

SetCmd.RequestStats - Class in org.gorpipe.gorshell

SetCmd.Timing - Class in org.gorpipe.gorshell

setCollapseThreshold(int) - Method in class org.gorpipe.gor.gava.VariantAssociation

setColumnNamesAndTypes(String[], String[]) - Method in class gorsat.parser.CalcCompiler

setConfigFile(String) - Method in class gorsat.process.GenericSessionFactory

setConfigFile(String) - Method in class org.gorpipe.gorshell.GorShell

setConfigFile(String) - Method in class org.gorpipe.gorshell.GorShellSessionFactory

setConfigFile(String) - Method in class org.gorpipe.gorshell.QueryRunner

setCurrentChrom(String) - Method in class gorsat.BatchedPipeStepIteratorAdaptor

setData(double[][], int) - Method in class gorsat.Regression.LinearRegression

setData(List<String>, List<String[]>) - Method in class org.gorpipe.querydialogs.util.SubjectLists

Set data for lists other than default.

setDebug(boolean) - Method in class org.gorpipe.gor.gava.VariantAssociation

setDefaultListsData(List<String>, List<String[]>, String[]) - Method in class org.gorpipe.querydialogs.util.SubjectLists

Set data for default lists.

setDeferUpdates(boolean) - Method in class org.gorpipe.querydialogs.Dialog

Defer updates to interpolated query.

setDialogsFilePath(Path) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

setDisplayResults(boolean) - Method in class org.gorpipe.gorshell.QueryRunner

setDisplayWidth(Integer) - Method in class org.gorpipe.querydialogs.Argument

Set the display width for argument.

setFileCacheEnabled(boolean) - Method in class org.gorpipe.gorshell.GorShellSessionFactory

setFormat(String) - Method in class org.gorpipe.querydialogs.argument.StringArgument

setHelpDefinition(FilteringColumnDefinition) - Method in class org.gorpipe.querydialogs.argument.StringArgument

Set help definition for argument.

setHtmlTemplate(String) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Deprecated.

Should define an html template for perspectives instead

setIncludeProtective(boolean) - Method in class org.gorpipe.gor.gava.GavaLogLikelihood

Set if protective variants should be included (default is false).

setMax(Double) - Method in class org.gorpipe.querydialogs.argument.NumberArgument

setMaxTextFieldMinWidth(int) - Method in class org.gorpipe.querydialogs.argument.NumberArgument

Set the minium width of a text field for the argument maximum value.

setMin(Double) - Method in class org.gorpipe.querydialogs.argument.NumberArgument

setMinBucketSize(int) - Method in class org.gorpipe.gor.manager.BucketManager

setMinBucketSize(int) - Method in class org.gorpipe.gor.manager.TableManager

setMinTextFieldMinWidth(int) - Method in class org.gorpipe.querydialogs.argument.NumberArgument

Set the minium width of a text field for the argument minimum value.

setModel(boolean, boolean, int, int, boolean, double, boolean) - Method in class org.gorpipe.gor.gava.VariantAssociation

Set the disease model (inheritance and penetrance patterns).

setNextRowBuffer(RowBuffer) - Method in class gorsat.RowBuffer

setNumberValue(Number) - Method in class org.gorpipe.querydialogs.argument.NumberArgument

setNumRandomIterations(int, int) - Method in class org.gorpipe.gor.gava.VariantAssociation

setOperator(String) - Method in class org.gorpipe.querydialogs.Argument

setPenetrance(int, int, boolean) - Method in class org.gorpipe.gor.gava.GavaLogLikelihood

setPersistingValueObject(SubjectLists) - Method in class org.gorpipe.querydialogs.argument.StringArgument

Set the persisting value.

setPnLists(String[], String[]) - Method in class org.gorpipe.gor.gava.VariantAssociation

setPosition(String, int) - Method in class gorsat.BatchedPipeStepIteratorAdaptor

setPosition(String, int) - Method in class gorsat.BatchedReadSource

setPosition(String, int) - Method in class gorsat.process.BaseStreamIterator

setPosition(String, int) - Method in class gorsat.process.NordIterator

setPosition(String, int) - Method in class gorsat.process.ProcessIteratorAdaptor

setPosition(String, int) - Method in class gorsat.process.ProcessRowSource

setPrior(double, int) - Method in class gorsat.gtgen.GTGen

Indicates that our n samples are a part of a bigger cohort of m + n samples, and for the m ones, excluding ours, the estimated allele frequency is af.

setQuery(String) - Method in interface org.gorpipe.jessica.GorQueryHandler

setRange(String, int, int) - Method in class gorsat.process.ProcessRowSource

setRange(String, int, int) - Method in class gorsat.process.ProcessSource

setReportViewer(ReportViewer) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

setRequestStatsEnabled(boolean) - Method in class org.gorpipe.gorshell.GorShellSessionFactory

setSecurityContext(String) - Method in class org.gorpipe.gor.manager.TableManager

setSubjectCounts(int, int) - Method in class org.gorpipe.gor.gava.GavaLogLikelihood

Settings() - Constructor for class org.gorpipe.gorshell.GorShell.Settings

setType(DialogType) - Method in class org.gorpipe.querydialogs.Dialog

setUnknownAllele(byte) - Method in class org.gorpipe.gor.haplotype.GBasicRulesCalculator

Set the value for an unknown allele (default is Byte.MIN_VALUE) .

setup() - Method in class gorsat.external.plink.PlinkAdjustAdaptor

setup() - Method in class gorsat.external.plink.PlinkProcessAdaptor

setup() - Method in class gorsat.external.plink.PlinkVcfProcessAdaptor

setup() - Method in class gorsat.IOTestAnalyser

setup() - Method in class gorsat.parquet.GorParquetFileOut

setUpperFreqThreshold(double) - Method in class org.gorpipe.gor.gava.GavaLogLikelihood

setValue(Object) - Method in class org.gorpipe.querydialogs.argument.NumberArgument

setValue(Object) - Method in class org.gorpipe.querydialogs.Argument

setValue(Object, boolean) - Method in class org.gorpipe.querydialogs.Argument

setValueTextFieldMinWidth(int) - Method in class org.gorpipe.querydialogs.argument.NumberArgument

Set the minium width of a text field for the argument value.

sf - Variable in class gorsat.Regression.LogisticRegression

shortDescr - Variable in class org.gorpipe.querydialogs.ArgumentDescription

shortDescr - Variable in class org.gorpipe.querydialogs.DialogDescription

Dialog short description.

sidak_sd(double[], double[]) - Static method in class gorsat.process.StatisticalAdjustment

Runs a Sidak step down correction on an ordered vector of p values.

sidak_ss(double, int) - Static method in class gorsat.process.StatisticalAdjustment

sigmoid(double) - Method in class gorsat.Regression.SigmoidFunction

SigmoidFunction - Class in gorsat.Regression

A class which uses a lookup table to compute the sigmoid function x -> 1/(1 + e^(-x)) up to a precision of 10^(-10).

signed_factor() - Method in class org.gorpipe.gor.GorScriptParser.FactorContext

signed_factor() - Method in class org.gorpipe.gor.GorScriptParser

Signed_factorContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Signed_factorContext

SingleQuoteString - Static variable in class org.gorpipe.gor.GorScriptLexer

SingleQuoteString - Static variable in class org.gorpipe.gor.GorScriptParser

SingleQuoteString() - Method in class org.gorpipe.gor.GorScriptParser.String_literalContext

size() - Method in class gorsat.RowBuffer

SkipFirstMethodModel - Class in org.gorpipe.querydialogs.templating

Template model that enables template writer to skip first occurence of a given argument.

SkipFirstMethodModel() - Constructor for class org.gorpipe.querydialogs.templating.SkipFirstMethodModel

skipHeader() - Method in class gorsat.process.GorJavaUtilities.CmdParams

skipLines() - Method in class gorsat.process.GorJavaUtilities.CmdParams

SLIDER - Static variable in class org.gorpipe.querydialogs.ArgumentType

SLIDER_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

solveLower(double[][], double[], double[], int) - Static method in class gorsat.Regression.LinearAlgebra

Solves Lx = y and writes the result to x.

solveSymPosDef(double[][], double[], double[]) - Static method in class gorsat.Regression.LinearAlgebra

Solves Ax = b and writes the results to x.

solveUpper(double[][], double[], double[], int) - Static method in class gorsat.Regression.LinearAlgebra

Solves Ux = y and writes the result to x.

StatisticalAdjustment - Class in gorsat.process

stats - Variable in class org.gorpipe.gor.RequestStats

statsAdded(String, StatsCollector) - Method in class org.gorpipe.gor.RequestStats

store(Path, String, String, long) - Method in class org.gorpipe.gor.clients.LocalFileCacheClient

storeFormat - Variable in enum org.gorpipe.querydialogs.factory.ArgumentContent.Format

Store format key.

storeSibling(Path, String) - Method in class org.gorpipe.gor.clients.LocalFileCacheClient

storeWithSpecificCacheFilename(Path, String, String, long) - Method in class org.gorpipe.gor.clients.LocalFileCacheClient

storingAllowed() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

stream() - Method in class org.gorpipe.gor.function.ListRowAdaptor

stream2RowList(Stream<Row>) - Static method in class gorsat.process.GorJavaUtilities

STRING - Static variable in class org.gorpipe.querydialogs.ArgumentType

string_literal() - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

string_literal() - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

string_literal() - Method in class org.gorpipe.gor.GorScriptParser

string_literal() - Method in class org.gorpipe.gor.GorScriptParser.String_literal_listContext

string_literal() - Method in class org.gorpipe.gor.GorScriptParser.ValueContext

string_literal(int) - Method in class org.gorpipe.gor.GorScriptParser.String_literal_listContext

string_literal_list() - Method in class org.gorpipe.gor.GorScriptParser.In_expressionContext

string_literal_list() - Method in class org.gorpipe.gor.GorScriptParser

String_literal_listContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.String_literal_listContext

String_literalContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.String_literalContext

STRING_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

StringArgument - Class in org.gorpipe.querydialogs.argument

Represents an argument that expects a string value.

StringArgument(StringArgument) - Constructor for class org.gorpipe.querydialogs.argument.StringArgument

StringArgument(ArgumentDescription, boolean, Boolean, Object, List<? extends Object>, URI, ValueFormatter, List<String>, Boolean, Integer, ArgumentType, Boolean) - Constructor for class org.gorpipe.querydialogs.argument.StringArgument

Constructor.

StringArgumentBuilder - Class in org.gorpipe.querydialogs.factory.builder

Responsible for building string arguments.

StringArgumentBuilder(FileReader) - Constructor for class org.gorpipe.querydialogs.factory.builder.StringArgumentBuilder

stringToValue(String) - Method in class org.gorpipe.querydialogs.RangedNumberFormatter

subCommandSplit(Path, String, List<String>) - Static method in class gorsat.process.ProcessIteratorAdaptor

SubjectLists - Class in org.gorpipe.querydialogs.util

Class holding information on lists and their content.

SubjectLists() - Constructor for class org.gorpipe.querydialogs.util.SubjectLists

Constructor.

SubjectLists(SubjectLists) - Constructor for class org.gorpipe.querydialogs.util.SubjectLists

Copy constructor.

subtract(double) - Method in class gorsat.parser.CalcLambdaBoolean

subtract(double) - Method in class gorsat.parser.CalcLambdaDouble

subtract(double) - Method in class gorsat.parser.CalcLambdaDoubleConstant

subtract(double) - Method in class gorsat.parser.CalcLambdaInteger

subtract(double) - Method in class gorsat.parser.CalcLambdaIntegerConstant

subtract(double) - Method in class gorsat.parser.CalcLambdaLong

subtract(double) - Method in class gorsat.parser.CalcLambdaLongConstant

subtract(double) - Method in class gorsat.parser.CalcLambdaString

subtract(double) - Method in class gorsat.parser.CalcLambdaStringConstant

subtract(double) - Method in class gorsat.parser.CalcLambdaVariable

subtract(int) - Method in class gorsat.parser.CalcLambdaBoolean

subtract(int) - Method in class gorsat.parser.CalcLambdaDouble

subtract(int) - Method in class gorsat.parser.CalcLambdaDoubleConstant

subtract(int) - Method in class gorsat.parser.CalcLambdaInteger

subtract(int) - Method in class gorsat.parser.CalcLambdaIntegerConstant

subtract(int) - Method in class gorsat.parser.CalcLambdaLong

subtract(int) - Method in class gorsat.parser.CalcLambdaLongConstant

subtract(int) - Method in class gorsat.parser.CalcLambdaString

subtract(int) - Method in class gorsat.parser.CalcLambdaStringConstant

subtract(int) - Method in class gorsat.parser.CalcLambdaVariable

subtract(long) - Method in class gorsat.parser.CalcLambdaBoolean

subtract(long) - Method in class gorsat.parser.CalcLambdaDouble

subtract(long) - Method in class gorsat.parser.CalcLambdaDoubleConstant

subtract(long) - Method in class gorsat.parser.CalcLambdaInteger

subtract(long) - Method in class gorsat.parser.CalcLambdaIntegerConstant

subtract(long) - Method in class gorsat.parser.CalcLambdaLong

subtract(long) - Method in class gorsat.parser.CalcLambdaLongConstant

subtract(long) - Method in class gorsat.parser.CalcLambdaString

subtract(long) - Method in class gorsat.parser.CalcLambdaStringConstant

subtract(long) - Method in class gorsat.parser.CalcLambdaVariable

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaBoolean

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaDouble

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaDoubleConstant

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaInteger

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaIntegerConstant

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaLong

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaLongConstant

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaString

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaStringConstant

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaVariable

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaBoolean

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaDouble

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaDoubleConstant

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaInteger

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaIntegerConstant

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaLong

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaLongConstant

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaString

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaStringConstant

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaVariable

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaBoolean

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaDouble

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaDoubleConstant

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaInteger

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaIntegerConstant

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaLong

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaLongConstant

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaString

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaStringConstant

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaVariable

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaBoolean

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaDouble

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaDoubleConstant

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaInteger

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaIntegerConstant

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaLong

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaLongConstant

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaString

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaStringConstant

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaVariable

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaBoolean

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDouble

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDoubleConstant

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaInteger

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaIntegerConstant

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLong

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLongConstant

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaString

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaStringConstant

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaVariable

sum(double[], int) - Static method in class gorsat.Regression.LinearAlgebra

Computes the sum of the elements of x with index < len.

sum(double[], int, int) - Static method in class gorsat.Regression.LinearAlgebra

Computes the sum the elements of x whose index is < upTo and ≥ offset.

SyntaxChecker - Class in org.gorpipe.gor

SyntaxChecker() - Constructor for class org.gorpipe.gor.SyntaxChecker

syntaxError(Recognizer<?, ?>, Object, int, int, String, RecognitionException) - Method in class org.gorpipe.gor.SyntaxChecker

T

T__0 - Static variable in class org.gorpipe.gor.GorScriptLexer

T__0 - Static variable in class org.gorpipe.gor.GorScriptParser

T__1 - Static variable in class org.gorpipe.gor.GorScriptLexer

T__1 - Static variable in class org.gorpipe.gor.GorScriptParser

T__2 - Static variable in class org.gorpipe.gor.GorScriptLexer

T__2 - Static variable in class org.gorpipe.gor.GorScriptParser

T__3 - Static variable in class org.gorpipe.gor.GorScriptLexer

T__3 - Static variable in class org.gorpipe.gor.GorScriptParser

T__4 - Static variable in class org.gorpipe.gor.GorScriptLexer

T__4 - Static variable in class org.gorpipe.gor.GorScriptParser

T__5 - Static variable in class org.gorpipe.gor.GorScriptLexer

T__5 - Static variable in class org.gorpipe.gor.GorScriptParser

TABLE - org.gorpipe.querydialogs.factory.Perspective.VIEW_TYPE

Data is displayed as a table.

TableManager - Class in org.gorpipe.gor.manager

Class to manage gor tables (dictionaries and tables).

TableManager() - Constructor for class org.gorpipe.gor.manager.TableManager

Default constructor.

TableManager.Builder - Class in org.gorpipe.gor.manager

TableManagerCLI - Class in org.gorpipe.gor.manager

Command line interface for the table manager.

TableManagerCLI() - Constructor for class org.gorpipe.gor.manager.TableManagerCLI

tags - Variable in class org.gorpipe.gor.cli.manager.FilterOptions

tasks(Collection<GorScriptTask>) - Method in class org.gorpipe.gor.RequestStats

tempLocation(String, String) - Method in class org.gorpipe.gor.clients.LocalFileCacheClient

term() - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

term() - Method in class org.gorpipe.gor.GorScriptParser

term(int) - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

TermContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.TermContext

terminateServiceLog() - Static method in class org.gorpipe.logging.GorLogbackUtil

test(T) - Method in class org.gorpipe.gor.function.GorRowFilterFunction

TestCommand - Class in org.gorpipe.gor.cli.manager

TestCommand() - Constructor for class org.gorpipe.gor.cli.manager.TestCommand

TestIsLockCommand - Class in org.gorpipe.gor.cli.manager

TestIsLockCommand() - Constructor for class org.gorpipe.gor.cli.manager.TestIsLockCommand

TestReadLockCommand - Class in org.gorpipe.gor.cli.manager

TestReadLockCommand() - Constructor for class org.gorpipe.gor.cli.manager.TestReadLockCommand

TestWriteLockCommand - Class in org.gorpipe.gor.cli.manager

TestWriteLockCommand() - Constructor for class org.gorpipe.gor.cli.manager.TestWriteLockCommand

TIMES - Static variable in class org.gorpipe.gor.GorScriptLexer

TIMES - Static variable in class org.gorpipe.gor.GorScriptParser

TIMES() - Method in class org.gorpipe.gor.GorScriptParser.TermContext

TIMES(int) - Method in class org.gorpipe.gor.GorScriptParser.TermContext

Timing() - Constructor for class org.gorpipe.gorshell.SetCmd.Timing

timingEnabled - Variable in class org.gorpipe.gorshell.GorShell.Settings

tokenNames - Static variable in class org.gorpipe.gor.GorScriptLexer

Deprecated.

Use GorScriptLexer.VOCABULARY instead.

tokenNames - Static variable in class org.gorpipe.gor.GorScriptParser

Deprecated.

Use GorScriptParser.VOCABULARY instead.

toLambda() - Method in class gorsat.parser.CalcLambdaVariable

tooltip - Variable in class org.gorpipe.querydialogs.ArgumentDescription

toString() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

toString() - Method in class gorsat.external.plink.AdjustedGORLine

toString() - Method in class gorsat.external.plink.GORLine

toString() - Method in class gorsat.process.NordIteratorEntry

toString() - Method in class org.gorpipe.querydialogs.Argument

toString() - Method in class org.gorpipe.querydialogs.ArgumentType

toString() - Method in class org.gorpipe.querydialogs.Dialog

toString() - Method in class org.gorpipe.querydialogs.factory.ColumnGroup

toString() - Method in class org.gorpipe.querydialogs.factory.Perspective

toString() - Method in class org.gorpipe.querydialogs.util.SubjectLists

TouchCommand - Class in org.gorpipe.gor.cli.cache

TouchCommand() - Constructor for class org.gorpipe.gor.cli.cache.TouchCommand

toUppercase(Collection<String>) - Static method in class gorsat.process.GorJavaUtilities

tripleDotProd(double[], double[], double[], int) - Static method in class gorsat.Regression.LinearAlgebra

Computes the triple dot product of the sub-vectors of x, y, z consisting of the elements whose index is < len.

tripleDotProd(double[], double[], double[], int, int) - Static method in class gorsat.Regression.LinearAlgebra

Computes the tripte dot product of the sub-vectors of x, y, z consisting of the elements whose index is < upTo and ≥ offset.

tryAdvance(Consumer<? super Row>) - Method in class gorsat.BatchedPipeStepIteratorAdaptor

trySplit() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

tStats - Variable in class gorsat.Regression.LinearRegression

type - Variable in class org.gorpipe.querydialogs.Argument

U

unknown - Variable in class org.gorpipe.gor.haplotype.GBasicRulesCalculator

updateGradientAndHessian(double[][], boolean[]) - Method in class gorsat.Regression.LogisticRegression

updateGradientAndHessianFirstRun(double[][], boolean[]) - Method in class gorsat.Regression.LogisticRegression

updateTimeMeasurement(long, RowBuffer) - Method in class gorsat.BatchedPipeStepIteratorAdaptor

updateTimeMeasurement(long, RowBuffer) - Method in class gorsat.BatchedReadSource

upperFreqThreshold - Variable in class org.gorpipe.gor.gava.GavaLogLikelihood

Upper threshold for the control allele frequency.

useDefaultLists() - Method in class org.gorpipe.querydialogs.util.SubjectLists

Check if default lists should be used.

useHistory(boolean) - Method in class org.gorpipe.gor.manager.TableManager.Builder

useHttpServer() - Method in class gorsat.process.GorJavaUtilities.CmdParams

useProcessMethod() - Method in class gorsat.process.GorJavaUtilities.CmdParams

V

validate(String) - Method in class org.gorpipe.gor.SemanticChecker

validateFiles(boolean) - Method in class org.gorpipe.gor.manager.TableManager.Builder

value - Variable in class org.gorpipe.querydialogs.Argument

value - Variable in class org.gorpipe.querydialogs.factory.ArgumentContent

The value.

value() - Method in class org.gorpipe.gor.GorScriptParser

value() - Method in class org.gorpipe.gor.GorScriptParser.XfactorContext

VALUE_GRID - Static variable in class org.gorpipe.querydialogs.ArgumentType

VALUE_GRID_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

For selection from a value grid (based on class GridTableView).

ValueContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.ValueContext

valueFormat - Variable in enum org.gorpipe.querydialogs.factory.ArgumentContent.Format

Value format key.

ValueFormatter - Class in org.gorpipe.querydialogs.util

ValueFormatter(Map<Object, String>) - Constructor for class org.gorpipe.querydialogs.util.ValueFormatter

valueOf(String) - Static method in enum org.gorpipe.gor.manager.BucketManager.BucketPackLevel

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in class org.gorpipe.querydialogs.ArgumentType

valueOf(String) - Static method in enum org.gorpipe.querydialogs.ChartDataType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.gorpipe.querydialogs.DialogType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.gorpipe.querydialogs.factory.ArgumentContent.Format

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.gorpipe.querydialogs.factory.Perspective.VIEW_TYPE

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.gorpipe.gor.manager.BucketManager.BucketPackLevel

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.gorpipe.querydialogs.ChartDataType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.gorpipe.querydialogs.DialogType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.gorpipe.querydialogs.factory.ArgumentContent.Format

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.gorpipe.querydialogs.factory.Perspective.VIEW_TYPE

Returns an array containing the constants of this enum type, in the order they are declared.

VALUES_FORMAT - Static variable in class org.gorpipe.querydialogs.util.ValueFormatter

valueToString(Object) - Method in class org.gorpipe.querydialogs.RangedNumberFormatter

variable() - Method in class org.gorpipe.gor.GorScriptParser.ValueContext

variable() - Method in class org.gorpipe.gor.GorScriptParser

VariableContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.VariableContext

VariantAssociation - Class in org.gorpipe.gor.gava

Variant association algorithm, based on the VAAST algorithm.

VariantAssociation() - Constructor for class org.gorpipe.gor.gava.VariantAssociation

Instantiate the class.

VariantCounts - Class in org.gorpipe.gor.gava

VariantCounts(int[], double, double) - Constructor for class org.gorpipe.gor.gava.VariantCounts

VCFValue(double) - Constructor for class gorsat.process.GorJavaUtilities.VCFValue

verify() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Verify dialog by getting the error message.

version - Variable in class org.gorpipe.querydialogs.Dialog

VIRTUAL_PN_FILE - Static variable in class org.gorpipe.querydialogs.ArgumentType

VIRTUAL_PN_FILE_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

virtual_relation() - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

virtual_relation() - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

virtual_relation() - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

virtual_relation() - Method in class org.gorpipe.gor.GorScriptParser

virtual_relation_name() - Method in class org.gorpipe.gor.GorScriptParser.Create_statementContext

virtual_relation_name() - Method in class org.gorpipe.gor.GorScriptParser

Virtual_relation_nameContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Virtual_relation_nameContext

Virtual_relationContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Virtual_relationContext

visitArgument(GorScriptParser.ArgumentContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.argument().

visitArgument(GorScriptParser.ArgumentContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.argument().

visitCalc_command(GorScriptParser.Calc_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.calc_command().

visitCalc_command(GorScriptParser.Calc_commandContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.calc_command().

visitCalc_expression(GorScriptParser.Calc_expressionContext) - Method in class gorsat.parser.CalcCompiler

visitCalc_expression(GorScriptParser.Calc_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.calc_expression().

visitCalc_expression(GorScriptParser.Calc_expressionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.calc_expression().

visitCalc_expression_list(GorScriptParser.Calc_expression_listContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.calc_expression_list().

visitCalc_expression_list(GorScriptParser.Calc_expression_listContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.calc_expression_list().

visitColumn_list(GorScriptParser.Column_listContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.column_list().

visitColumn_list(GorScriptParser.Column_listContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.column_list().

visitColumn_name(GorScriptParser.Column_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.column_name().

visitColumn_name(GorScriptParser.Column_nameContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.column_name().

visitColumn_number(GorScriptParser.Column_numberContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.column_number().

visitColumn_number(GorScriptParser.Column_numberContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.column_number().

visitColumn_range(GorScriptParser.Column_rangeContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.column_range().

visitColumn_range(GorScriptParser.Column_rangeContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.column_range().

visitColumn_ref(GorScriptParser.Column_refContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.column_ref().

visitColumn_ref(GorScriptParser.Column_refContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.column_ref().

visitColumn_rename_rule(GorScriptParser.Column_rename_ruleContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.column_rename_rule().

visitColumn_rename_rule(GorScriptParser.Column_rename_ruleContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.column_rename_rule().

visitColumn_selection(GorScriptParser.Column_selectionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.column_selection().

visitColumn_selection(GorScriptParser.Column_selectionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.column_selection().

visitColumn_wildcard(GorScriptParser.Column_wildcardContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.column_wildcard().

visitColumn_wildcard(GorScriptParser.Column_wildcardContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.column_wildcard().

visitCompare_expressions(GorScriptParser.Compare_expressionsContext) - Method in class gorsat.parser.CalcCompiler

visitCompare_expressions(GorScriptParser.Compare_expressionsContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.compare_expressions().

visitCompare_expressions(GorScriptParser.Compare_expressionsContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.compare_expressions().

visitCreate_statement(GorScriptParser.Create_statementContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.create_statement().

visitCreate_statement(GorScriptParser.Create_statementContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.create_statement().

visitDef_macro(GorScriptParser.Def_macroContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.def_macro().

visitDef_macro(GorScriptParser.Def_macroContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.def_macro().

visitErrorNode(ErrorNode) - Method in class org.gorpipe.gor.GorScriptBaseListener

visitExpression(GorScriptParser.ExpressionContext) - Method in class gorsat.parser.CalcCompiler

visitExpression(GorScriptParser.ExpressionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.expression().

visitExpression(GorScriptParser.ExpressionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.expression().

visitFactor(GorScriptParser.FactorContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.factor().

visitFactor(GorScriptParser.FactorContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.factor().

visitFilename(GorScriptParser.FilenameContext) - Method in class gorsat.parser.CalcCompiler

visitFilename(GorScriptParser.FilenameContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.filename().

visitFilename(GorScriptParser.FilenameContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.filename().

visitFunction_call(GorScriptParser.Function_callContext) - Method in class gorsat.parser.CalcCompiler

visitFunction_call(GorScriptParser.Function_callContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.function_call().

visitFunction_call(GorScriptParser.Function_callContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.function_call().

visitFunction_expr(GorScriptParser.Function_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.function_expr().

visitFunction_expr(GorScriptParser.Function_exprContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.function_expr().

visitFunction_name(GorScriptParser.Function_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.function_name().

visitFunction_name(GorScriptParser.Function_nameContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.function_name().

visitGeneric_command(GorScriptParser.Generic_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.generic_command().

visitGeneric_command(GorScriptParser.Generic_commandContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.generic_command().

visitGeneric_command(GorScriptParser.Generic_commandContext) - Method in class org.gorpipe.gor.SemanticChecker

visitGor_expression(GorScriptParser.Gor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.gor_expression().

visitGor_expression(GorScriptParser.Gor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.gor_expression().

visitGornor_expression(GorScriptParser.Gornor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.gornor_expression().

visitGornor_expression(GorScriptParser.Gornor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.gornor_expression().

visitHide_command(GorScriptParser.Hide_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.hide_command().

visitHide_command(GorScriptParser.Hide_commandContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.hide_command().

visitIf_expr(GorScriptParser.If_exprContext) - Method in class gorsat.parser.CalcCompiler

visitIf_expr(GorScriptParser.If_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.if_expr().

visitIf_expr(GorScriptParser.If_exprContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.if_expr().

visitIn_expression(GorScriptParser.In_expressionContext) - Method in class gorsat.parser.CalcCompiler

visitIn_expression(GorScriptParser.In_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.in_expression().

visitIn_expression(GorScriptParser.In_expressionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.in_expression().

visitIndag_expression(GorScriptParser.Indag_expressionContext) - Method in class gorsat.parser.CalcCompiler

visitIndag_expression(GorScriptParser.Indag_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.indag_expression().

visitIndag_expression(GorScriptParser.Indag_expressionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.indag_expression().

visitInput_source(GorScriptParser.Input_sourceContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.input_source().

visitInput_source(GorScriptParser.Input_sourceContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.input_source().

visitMacro_name(GorScriptParser.Macro_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.macro_name().

visitMacro_name(GorScriptParser.Macro_nameContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.macro_name().

visitMacro_value(GorScriptParser.Macro_valueContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.macro_value().

visitMacro_value(GorScriptParser.Macro_valueContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.macro_value().

visitNested_query(GorScriptParser.Nested_queryContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.nested_query().

visitNested_query(GorScriptParser.Nested_queryContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.nested_query().

visitNor_expression(GorScriptParser.Nor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.nor_expression().

visitNor_expression(GorScriptParser.Nor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.nor_expression().

visitNot_rel_expr(GorScriptParser.Not_rel_exprContext) - Method in class gorsat.parser.CalcCompiler

visitNot_rel_expr(GorScriptParser.Not_rel_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.not_rel_expr().

visitNot_rel_expr(GorScriptParser.Not_rel_exprContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.not_rel_expr().

visitNumber(GorScriptParser.NumberContext) - Method in class gorsat.parser.CalcCompiler

visitNumber(GorScriptParser.NumberContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.number().

visitNumber(GorScriptParser.NumberContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.number().

visitOption(GorScriptParser.OptionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.option().

visitOption(GorScriptParser.OptionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.option().

visitOption_value(GorScriptParser.Option_valueContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.option_value().

visitOption_value(GorScriptParser.Option_valueContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.option_value().

visitOptional_power_factor(GorScriptParser.Optional_power_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.optional_power_factor().

visitOptional_power_factor(GorScriptParser.Optional_power_factorContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.optional_power_factor().

visitOptions_and_args(GorScriptParser.Options_and_argsContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.options_and_args().

visitOptions_and_args(GorScriptParser.Options_and_argsContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.options_and_args().

visitParen_expr(GorScriptParser.Paren_exprContext) - Method in class gorsat.parser.CalcCompiler

visitParen_expr(GorScriptParser.Paren_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.paren_expr().

visitParen_expr(GorScriptParser.Paren_exprContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.paren_expr().

visitParen_rel_expr(GorScriptParser.Paren_rel_exprContext) - Method in class gorsat.parser.CalcCompiler

visitParen_rel_expr(GorScriptParser.Paren_rel_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.paren_rel_expr().

visitParen_rel_expr(GorScriptParser.Paren_rel_exprContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.paren_rel_expr().

visitPgor_expression(GorScriptParser.Pgor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.pgor_expression().

visitPgor_expression(GorScriptParser.Pgor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.pgor_expression().

visitPipe_command(GorScriptParser.Pipe_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.pipe_command().

visitPipe_command(GorScriptParser.Pipe_commandContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.pipe_command().

visitPower_factor(GorScriptParser.Power_factorContext) - Method in class gorsat.parser.CalcCompiler

visitPower_factor(GorScriptParser.Power_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.power_factor().

visitPower_factor(GorScriptParser.Power_factorContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.power_factor().

visitPredicate(GorScriptParser.PredicateContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.predicate().

visitPredicate(GorScriptParser.PredicateContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.predicate().

visitPredicate_factor(GorScriptParser.Predicate_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.predicate_factor().

visitPredicate_factor(GorScriptParser.Predicate_factorContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.predicate_factor().

visitQuery_expression(GorScriptParser.Query_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.query_expression().

visitQuery_expression(GorScriptParser.Query_expressionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.query_expression().

visitRel_expr(GorScriptParser.Rel_exprContext) - Method in class gorsat.parser.CalcCompiler

visitRel_expr(GorScriptParser.Rel_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.rel_expr().

visitRel_expr(GorScriptParser.Rel_exprContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.rel_expr().

visitRel_term(GorScriptParser.Rel_termContext) - Method in class gorsat.parser.CalcCompiler

visitRel_term(GorScriptParser.Rel_termContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.rel_term().

visitRel_term(GorScriptParser.Rel_termContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.rel_term().

visitRename_command(GorScriptParser.Rename_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.rename_command().

visitRename_command(GorScriptParser.Rename_commandContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.rename_command().

visitReplace_command(GorScriptParser.Replace_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.replace_command().

visitReplace_command(GorScriptParser.Replace_commandContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.replace_command().

visitScript(GorScriptParser.ScriptContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.script().

visitScript(GorScriptParser.ScriptContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.script().

visitSelect_command(GorScriptParser.Select_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.select_command().

visitSelect_command(GorScriptParser.Select_commandContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.select_command().

visitSigned_factor(GorScriptParser.Signed_factorContext) - Method in class gorsat.parser.CalcCompiler

visitSigned_factor(GorScriptParser.Signed_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.signed_factor().

visitSigned_factor(GorScriptParser.Signed_factorContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.signed_factor().

visitString_literal(GorScriptParser.String_literalContext) - Method in class gorsat.parser.CalcCompiler

visitString_literal(GorScriptParser.String_literalContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.string_literal().

visitString_literal(GorScriptParser.String_literalContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.string_literal().

visitString_literal_list(GorScriptParser.String_literal_listContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.string_literal_list().

visitString_literal_list(GorScriptParser.String_literal_listContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.string_literal_list().

visitTerm(GorScriptParser.TermContext) - Method in class gorsat.parser.CalcCompiler

visitTerm(GorScriptParser.TermContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.term().

visitTerm(GorScriptParser.TermContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.term().

visitTerminal(TerminalNode) - Method in class org.gorpipe.gor.GorScriptBaseListener

visitValue(GorScriptParser.ValueContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.value().

visitValue(GorScriptParser.ValueContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.value().

visitVariable(GorScriptParser.VariableContext) - Method in class gorsat.parser.CalcCompiler

visitVariable(GorScriptParser.VariableContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.variable().

visitVariable(GorScriptParser.VariableContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.variable().

visitVirtual_relation(GorScriptParser.Virtual_relationContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.virtual_relation().

visitVirtual_relation(GorScriptParser.Virtual_relationContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.virtual_relation().

visitVirtual_relation(GorScriptParser.Virtual_relationContext) - Method in class org.gorpipe.gor.SemanticChecker

visitVirtual_relation_name(GorScriptParser.Virtual_relation_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.virtual_relation_name().

visitVirtual_relation_name(GorScriptParser.Virtual_relation_nameContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.virtual_relation_name().

visitVirtual_relation_name(GorScriptParser.Virtual_relation_nameContext) - Method in class org.gorpipe.gor.SemanticChecker

visitWhere_command(GorScriptParser.Where_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.where_command().

visitWhere_command(GorScriptParser.Where_commandContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.where_command().

visitXfactor(GorScriptParser.XfactorContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.xfactor().

visitXfactor(GorScriptParser.XfactorContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.xfactor().

VOCABULARY - Static variable in class org.gorpipe.gor.GorScriptLexer

VOCABULARY - Static variable in class org.gorpipe.gor.GorScriptParser

W

WHERE - Static variable in class org.gorpipe.gor.GorScriptLexer

WHERE - Static variable in class org.gorpipe.gor.GorScriptParser

WHERE() - Method in class org.gorpipe.gor.GorScriptParser.Where_commandContext

where_command() - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

where_command() - Method in class org.gorpipe.gor.GorScriptParser

Where_commandContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Where_commandContext

workers - Variable in class org.gorpipe.gor.cli.manager.CommandBucketizeOptions

wrapObjectArrayIterator(Iterator<Object[]>) - Static method in class gorsat.process.GorJavaUtilities

Helper method for wrapping Object[] iterator to Stream.

write(Row) - Method in class gorsat.parquet.GorParquetWriteSupport

writePath - Variable in class org.gorpipe.querydialogs.factory.PerspectiveDialog

WS - Static variable in class org.gorpipe.gor.GorScriptLexer

WS - Static variable in class org.gorpipe.gor.GorScriptParser

X

xfactor() - Method in class org.gorpipe.gor.GorScriptParser.FactorContext

xfactor() - Method in class org.gorpipe.gor.GorScriptParser.Signed_factorContext

xfactor() - Method in class org.gorpipe.gor.GorScriptParser

XfactorContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.XfactorContext

Z

zStats - Variable in class gorsat.Regression.LogisticRegression

_

_ATN - Static variable in class org.gorpipe.gor.GorScriptLexer

_ATN - Static variable in class org.gorpipe.gor.GorScriptParser

_decisionToDFA - Static variable in class org.gorpipe.gor.GorScriptLexer

_decisionToDFA - Static variable in class org.gorpipe.gor.GorScriptParser

_serializedATN - Static variable in class org.gorpipe.gor.GorScriptLexer

_serializedATN - Static variable in class org.gorpipe.gor.GorScriptParser

_sharedContextCache - Static variable in class org.gorpipe.gor.GorScriptLexer

_sharedContextCache - Static variable in class org.gorpipe.gor.GorScriptParser

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