Package gorsat.external.plink

Class PlinkArguments

java.lang.Object

gorsat.external.plink.PlinkArguments

public class PlinkArguments
extends java.lang.Object

This class stores the phenotype file for plink vcf input header generation Also the argument to the plink external process

Constructor Summary

Constructors

Constructor	Description
PlinkArguments(java.lang.String[] phenonames, java.lang.String pheno, java.lang.String covar, java.lang.String residualize, boolean firth, boolean hideCovar, boolean dom, boolean rec, boolean vs, boolean qn, boolean cvs, boolean controlZero, float hweThreshold, float genoThreshold, float mafThreshold)

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PlinkArguments

public PlinkArguments(java.lang.String[] phenonames,
                      java.lang.String pheno,
                      java.lang.String covar,
                      java.lang.String residualize,
                      boolean firth,
                      boolean hideCovar,
                      boolean dom,
                      boolean rec,
                      boolean vs,
                      boolean qn,
                      boolean cvs,
                      boolean controlZero,
                      float hweThreshold,
                      float genoThreshold,
                      float mafThreshold)