Hierarchy For All Packages

Package Hierarchies:

• gorsat,
• gorsat.external.plink,
• gorsat.gtgen,
• gorsat.parquet,
• gorsat.parser,
• gorsat.process,
• gorsat.Regression,
• org.gorpipe.gor,
• org.gorpipe.gor.clients,
• org.gorpipe.gor.function,
• org.gorpipe.gor.gava,
• org.gorpipe.gor.haplotype,
• org.gorpipe.gor.manager,
• org.gorpipe.gor.util,
• org.gorpipe.querydialogs,
• org.gorpipe.querydialogs.argument,
• org.gorpipe.querydialogs.factory,
• org.gorpipe.querydialogs.factory.builder,
• org.gorpipe.querydialogs.templating,
• org.gorpipe.querydialogs.util

Class Hierarchy

• java.lang.Object
  • org.gorpipe.querydialogs.factory.AbstractDialogFactory<T>
    • org.gorpipe.querydialogs.factory.PerspectiveDialogFactory
  • org.antlr.v4.runtime.tree.AbstractParseTreeVisitor<T> (implements org.antlr.v4.runtime.tree.ParseTreeVisitor<T>)
    • org.gorpipe.gor.GorScriptBaseVisitor<T> (implements org.gorpipe.gor.GorScriptVisitor<T>)
      • gorsat.parser.CalcCompiler
      • org.gorpipe.gor.SemanticChecker
  • gorsat.external.plink.AdjustedGORLine (implements java.lang.Comparable<T>)
  • gorsat.external.plink.AdjustedGORLineIterator (implements java.lang.Comparable<T>)
  • org.gorpipe.querydialogs.factory.ArgumentBuilder
    • org.gorpipe.querydialogs.factory.builder.DateArgumentBuilder
    • org.gorpipe.querydialogs.factory.builder.FileArgumentBuilder
    • org.gorpipe.querydialogs.factory.builder.NumberArgumentBuilder
    • org.gorpipe.querydialogs.factory.builder.QueryArgumentBuilder
    • org.gorpipe.querydialogs.factory.builder.StringArgumentBuilder
      • org.gorpipe.querydialogs.GridArgumentBuilder
  • org.gorpipe.querydialogs.factory.ArgumentContent
  • org.gorpipe.querydialogs.ArgumentDescription
  • org.gorpipe.querydialogs.ArgumentType
  • org.antlr.v4.runtime.BaseErrorListener (implements org.antlr.v4.runtime.ANTLRErrorListener)
    • org.gorpipe.gor.SyntaxChecker
  • org.gorpipe.querydialogs.BasicBean (implements java.io.Serializable)
    • org.gorpipe.querydialogs.AbstractListBean (implements javax.swing.ListModel<E>)
      • org.gorpipe.querydialogs.Argument
        • org.gorpipe.querydialogs.argument.DateArgument
        • org.gorpipe.querydialogs.argument.FileArgument
        • org.gorpipe.querydialogs.argument.NumberArgument
        • org.gorpipe.querydialogs.argument.QueryArgument
        • org.gorpipe.querydialogs.argument.StringArgument
          • org.gorpipe.querydialogs.GridArgument
      • org.gorpipe.querydialogs.Dialog
        • org.gorpipe.querydialogs.factory.PerspectiveDialog
  • freemarker.ext.beans.BeansWrapper (implements freemarker.template.ObjectWrapper)
    • freemarker.template.DefaultObjectWrapper
      • org.gorpipe.querydialogs.templating.DialogArgumentWrapper
  • org.gorpipe.gor.manager.BucketCreatorGorPipe<T> (implements org.gorpipe.gor.manager.BucketCreator<T>)
  • org.gorpipe.gor.manager.BucketManager<T>
  • org.gorpipe.gor.manager.BucketManager.Builder<T>
  • gorsat.parser.CalcLambdaBoolean (implements gorsat.parser.TypedCalcLambda)
  • gorsat.parser.CalcLambdaNumeric (implements gorsat.parser.TypedCalcLambda)
    • gorsat.parser.CalcLambdaDouble
    • gorsat.parser.CalcLambdaDoubleConstant (implements gorsat.parser.Constant)
    • gorsat.parser.CalcLambdaInteger
    • gorsat.parser.CalcLambdaIntegerConstant (implements gorsat.parser.Constant)
    • gorsat.parser.CalcLambdaLong
    • gorsat.parser.CalcLambdaLongConstant (implements gorsat.parser.Constant)
  • gorsat.parser.CalcLambdaString (implements gorsat.parser.TypedCalcLambda)
  • gorsat.parser.CalcLambdaStringConstant (implements gorsat.parser.Constant, gorsat.parser.TypedCalcLambda)
  • gorsat.parser.CalcLambdaVariable (implements gorsat.parser.TypedCalcLambda)
  • org.gorpipe.querydialogs.factory.ColumnGroup
  • org.gorpipe.gor.gava.CombinationIterator
  • org.gorpipe.querydialogs.DialogDescription
  • gorsat.FreemarkerQueryUtilities
  • org.gorpipe.gor.gava.GavaLogLikelihood
    • org.gorpipe.gor.gava.DominantLogLikelihood
    • org.gorpipe.gor.gava.RecessiveLogLikelihood
    • org.gorpipe.gor.gava.RegularLogLikelihood
  • org.gorpipe.gor.haplotype.GBasicRulesCalculator
  • org.gorpipe.gor.util.GChiSquared2by2
  • org.gorpipe.gor.session.GenericFactory<T>
    • org.gorpipe.gor.session.GorRunnerFactory
      • gorsat.process.GenericRunnerFactory
    • gorsat.process.GorSessionFactory
      • gorsat.process.GenericSessionFactory
  • org.gorpipe.gor.model.GenomicIteratorBase (implements org.gorpipe.gor.model.GenomicIterator)
    • gorsat.BatchedPipeStepIteratorAdaptor (implements java.util.Spliterator<T>)
    • gorsat.BatchedReadSource
    • gorsat.process.NordIterator
    • gorsat.process.ProcessIteratorAdaptor (implements java.io.Serializable)
    • gorsat.process.ProcessSource
      • gorsat.process.ProcessRowSource
  • gorsat.process.GenotypeLookupUtilities
  • org.gorpipe.gor.util.GFisherExact2by2
  • org.gorpipe.gor.util.GLogGamma
  • org.gorpipe.gor.GorConstants
  • gorsat.process.GorJavaUtilities
  • gorsat.process.GorJavaUtilities.CmdParams
  • gorsat.process.GorJavaUtilities.PhenoInfo
  • gorsat.process.GorJavaUtilities.PRPRValue
    • gorsat.process.GorJavaUtilities.PRPRPRValue
    • gorsat.process.GorJavaUtilities.VCFValue
  • gorsat.external.plink.GORLine (implements java.lang.Comparable<T>)
  • org.gorpipe.gor.GorParsingError
  • org.gorpipe.gor.session.GorReportBuilder
    • gorsat.process.FreemarkerReportBuilder
  • org.gorpipe.gor.function.GorRowFilterFunction<T> (implements scala.Function1<T1,R>, java.util.function.Predicate<T>, java.io.Serializable)
  • org.gorpipe.gor.function.GorRowInferFunction (implements java.util.function.BinaryOperator<T>, java.io.Serializable)
  • org.gorpipe.gor.function.GorRowMapFunction (implements java.util.function.Function<T,R>, java.io.Serializable)
  • org.gorpipe.gor.function.GorRowQueryFunction (implements java.lang.AutoCloseable, java.util.function.Function<T,R>, java.io.Serializable)
  • org.gorpipe.gor.session.GorRunner
    • gorsat.process.GenericGorRunner
  • org.gorpipe.gor.GorScriptAnalyzer
  • org.gorpipe.gor.GorScriptBaseListener (implements org.gorpipe.gor.GorScriptListener)
  • gorsat.process.GorSessionCacheManager
  • gorsat.gtgen.GPParser
  • gorsat.gtgen.GTGen
  • gorsat.parser.HeaderCVP (implements org.gorpipe.gor.model.ColumnValueProvider)
  • gorsat.Iterators.IteratorSource (implements java.util.Iterator<E>)
    • gorsat.process.BaseStreamIterator
      • gorsat.process.GorStreamIterator
      • gorsat.process.NorStreamIterator
  • javax.swing.JFormattedTextField.AbstractFormatter (implements java.io.Serializable)
    • javax.swing.text.DefaultFormatter (implements java.lang.Cloneable, java.io.Serializable)
      • javax.swing.text.InternationalFormatter
        • javax.swing.text.NumberFormatter
          • org.gorpipe.querydialogs.RangedNumberFormatter
  • gorsat.Regression.LinearAlgebra
  • gorsat.Regression.LinearRegression
  • org.gorpipe.gor.clients.LocalFileCacheClient (implements org.gorpipe.client.FileCache)
    • org.gorpipe.gor.clients.NoCacheFileCacheClient
  • gorsat.Regression.LogisticRegression
  • org.gorpipe.gor.gava.MathArrayUtils
  • org.gorpipe.querydialogs.templating.NetworkTemplateLoader (implements freemarker.cache.TemplateLoader)
  • gorsat.process.NordIteratorEntry
  • gorsat.process.OptionEvaluator
  • gorsat.process.ParallelExecutor
  • org.apache.parquet.hadoop.ParquetWriter<T> (implements java.io.Closeable)
    • gorsat.parquet.GorParquetWriter
  • org.apache.parquet.hadoop.ParquetWriter.Builder<T,SELF>
    • gorsat.parquet.GorParquetWriter.GorParquetBuilder
  • org.gorpipe.querydialogs.factory.Perspective
  • org.gorpipe.querydialogs.factory.PerspectiveDialogDisplayParams
  • gorsat.external.plink.PlinkAdjustment (implements java.util.concurrent.Callable<V>)
  • gorsat.external.plink.PlinkArguments
  • gorsat.gtgen.PowerLookupTable
  • gorsat.Commands.Processor
    • gorsat.Commands.Analysis (implements scala.Cloneable)
      • gorsat.IOTestAnalyser
      • org.gorpipe.gor.function.ListRowAdaptor
      • gorsat.process.NorToGorPipeStep
      • gorsat.external.plink.PlinkAdjustAdaptor
      • gorsat.external.plink.PlinkProcessAdaptor
        • gorsat.external.plink.PlinkVcfProcessAdaptor
    • gorsat.Commands.Output
      • gorsat.parquet.GorParquetFileOut
  • org.gorpipe.querydialogs.templating.QueryEvalMethodModel (implements freemarker.template.TemplateMethodModel)
  • org.gorpipe.gor.model.QueryEvaluator
    • gorsat.process.SessionBasedQueryEvaluator
  • org.antlr.v4.runtime.Recognizer<Symbol,ATNInterpreter>
    • org.antlr.v4.runtime.Lexer (implements org.antlr.v4.runtime.TokenSource)
      • org.gorpipe.gor.GorScriptLexer
    • org.antlr.v4.runtime.Parser
      • org.gorpipe.gor.GorScriptParser
  • org.gorpipe.gor.RequestStats (implements org.gorpipe.gor.session.EventLogger)
  • gorsat.RowBuffer (implements java.util.Iterator<E>)
  • org.antlr.v4.runtime.RuleContext (implements org.antlr.v4.runtime.tree.RuleNode)
    • org.antlr.v4.runtime.ParserRuleContext
      • org.gorpipe.gor.GorScriptParser.ArgumentContext
      • org.gorpipe.gor.GorScriptParser.Calc_commandContext
      • org.gorpipe.gor.GorScriptParser.Calc_expression_listContext
      • org.gorpipe.gor.GorScriptParser.Calc_expressionContext
      • org.gorpipe.gor.GorScriptParser.Column_listContext
      • org.gorpipe.gor.GorScriptParser.Column_nameContext
      • org.gorpipe.gor.GorScriptParser.Column_numberContext
      • org.gorpipe.gor.GorScriptParser.Column_rangeContext
      • org.gorpipe.gor.GorScriptParser.Column_refContext
      • org.gorpipe.gor.GorScriptParser.Column_rename_ruleContext
      • org.gorpipe.gor.GorScriptParser.Column_selectionContext
      • org.gorpipe.gor.GorScriptParser.Column_wildcardContext
      • org.gorpipe.gor.GorScriptParser.Compare_expressionsContext
      • org.gorpipe.gor.GorScriptParser.Create_statementContext
      • org.gorpipe.gor.GorScriptParser.Def_macroContext
      • org.gorpipe.gor.GorScriptParser.ExpressionContext
      • org.gorpipe.gor.GorScriptParser.FactorContext
      • org.gorpipe.gor.GorScriptParser.FilenameContext
      • org.gorpipe.gor.GorScriptParser.Function_callContext
      • org.gorpipe.gor.GorScriptParser.Function_exprContext
      • org.gorpipe.gor.GorScriptParser.Function_nameContext
      • org.gorpipe.gor.GorScriptParser.Generic_commandContext
      • org.gorpipe.gor.GorScriptParser.Gor_expressionContext
      • org.gorpipe.gor.GorScriptParser.Gornor_expressionContext
      • org.gorpipe.gor.GorScriptParser.Hide_commandContext
      • org.gorpipe.gor.GorScriptParser.If_exprContext
      • org.gorpipe.gor.GorScriptParser.In_expressionContext
      • org.gorpipe.gor.GorScriptParser.Indag_expressionContext
      • org.gorpipe.gor.GorScriptParser.Input_sourceContext
      • org.gorpipe.gor.GorScriptParser.Macro_nameContext
      • org.gorpipe.gor.GorScriptParser.Macro_valueContext
      • org.gorpipe.gor.GorScriptParser.Nested_queryContext
      • org.gorpipe.gor.GorScriptParser.Nor_expressionContext
      • org.gorpipe.gor.GorScriptParser.Not_rel_exprContext
      • org.gorpipe.gor.GorScriptParser.NumberContext
      • org.gorpipe.gor.GorScriptParser.Option_valueContext
      • org.gorpipe.gor.GorScriptParser.Optional_power_factorContext
      • org.gorpipe.gor.GorScriptParser.OptionContext
      • org.gorpipe.gor.GorScriptParser.Options_and_argsContext
      • org.gorpipe.gor.GorScriptParser.Paren_exprContext
      • org.gorpipe.gor.GorScriptParser.Paren_rel_exprContext
      • org.gorpipe.gor.GorScriptParser.Pgor_expressionContext
      • org.gorpipe.gor.GorScriptParser.Pipe_commandContext
      • org.gorpipe.gor.GorScriptParser.Power_factorContext
      • org.gorpipe.gor.GorScriptParser.Predicate_factorContext
      • org.gorpipe.gor.GorScriptParser.PredicateContext
      • org.gorpipe.gor.GorScriptParser.Query_expressionContext
      • org.gorpipe.gor.GorScriptParser.Rel_exprContext
      • org.gorpipe.gor.GorScriptParser.Rel_termContext
      • org.gorpipe.gor.GorScriptParser.Rename_commandContext
      • org.gorpipe.gor.GorScriptParser.Replace_commandContext
      • org.gorpipe.gor.GorScriptParser.ScriptContext
      • org.gorpipe.gor.GorScriptParser.Select_commandContext
      • org.gorpipe.gor.GorScriptParser.Signed_factorContext
      • org.gorpipe.gor.GorScriptParser.String_literal_listContext
      • org.gorpipe.gor.GorScriptParser.String_literalContext
      • org.gorpipe.gor.GorScriptParser.TermContext
      • org.gorpipe.gor.GorScriptParser.ValueContext
      • org.gorpipe.gor.GorScriptParser.VariableContext
      • org.gorpipe.gor.GorScriptParser.Virtual_relation_nameContext
      • org.gorpipe.gor.GorScriptParser.Virtual_relationContext
      • org.gorpipe.gor.GorScriptParser.Where_commandContext
      • org.gorpipe.gor.GorScriptParser.XfactorContext
  • gorsat.Regression.SigmoidFunction
  • org.gorpipe.querydialogs.templating.SkipFirstMethodModel (implements freemarker.template.TemplateMethodModel)
  • gorsat.process.StatisticalAdjustment
  • org.gorpipe.querydialogs.util.SubjectLists
  • org.gorpipe.gor.manager.TableManager
  • org.gorpipe.gor.manager.TableManager.Builder
  • org.gorpipe.querydialogs.util.ValueFormatter
  • org.gorpipe.gor.gava.VariantAssociation
  • org.gorpipe.gor.gava.VariantCounts
  • org.apache.parquet.hadoop.api.WriteSupport<T>
    • gorsat.parquet.GorParquetWriteSupport

Interface Hierarchy

• org.gorpipe.gor.manager.BucketCreator<T>
• gorsat.parser.Constant
• gorsat.parser.CvpBooleanLambda
• gorsat.parser.CvpDoubleLambda
• gorsat.parser.CvpIntegerLambda
• gorsat.parser.CvpLongLambda
• gorsat.parser.CvpStringLambda
• org.gorpipe.querydialogs.FilteringColumnDefinition
• org.antlr.v4.runtime.tree.ParseTreeListener
  • org.gorpipe.gor.GorScriptListener
• org.antlr.v4.runtime.tree.ParseTreeVisitor<T>
  • org.gorpipe.gor.GorScriptVisitor<T>
• org.gorpipe.querydialogs.factory.ReportViewer
• java.io.Serializable
  • org.aeonbits.owner.Config
    • gorsat.BatchedReadSourceConfig
• gorsat.parser.TypedCalcLambda

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.gorpipe.querydialogs.factory.ArgumentContent.Format
    • org.gorpipe.gor.manager.BucketManager.BucketPackLevel
    • org.gorpipe.querydialogs.ChartDataType
    • org.gorpipe.querydialogs.DialogType
    • gorsat.process.GorJavaUtilities.Phenotypes
    • org.gorpipe.querydialogs.factory.Perspective.VIEW_TYPE