Serialized Form (gortools 3.14.10 API)

Package gorsat
Package gorsat.parser
- Class gorsat.parser.ColumnInfo extends java.lang.Object implements Serializable
  - Serialized Fields
    - dataType
      
      java.lang.String dataType
    - name
      
      java.lang.String name
- Class gorsat.parser.ColumnInfo$ extends scala.runtime.AbstractFunction2<java.lang.String,java.lang.String,gorsat.parser.ColumnInfo> implements Serializable
  - Serialization Methods
    - readResolve
      
      private java.lang.Object readResolve()
- Class gorsat.parser.FixedSizeIteratorCvp extends java.lang.Object implements Serializable
  - Serialized Fields
    - curIndex
      
      int curIndex
    - cvp
      
      org.gorpipe.gor.model.ColumnValueProvider cvp
    - itemSize
      
      int itemSize
    - source
      
      java.lang.String source
    - start
      
      int start
- Class gorsat.parser.FixedSizeIteratorCvp$ extends scala.runtime.AbstractFunction3<org.gorpipe.gor.model.ColumnValueProvider,java.lang.String,java.lang.Object,gorsat.parser.FixedSizeIteratorCvp> implements Serializable
  - Serialization Methods
    - readResolve
      
      private java.lang.Object readResolve()
- Class gorsat.parser.FunctionWrapper extends java.lang.Object implements Serializable
  - Serialized Fields
    - bitmap$0
      
      byte bitmap$0
    - expectedArgs
      
      scala.collection.immutable.List<java.lang.String> expectedArgs
    - mangledName
      
      java.lang.String mangledName
    - myFunction
      
      java.lang.Object myFunction
    - name
      
      java.lang.String name
    - ReducerSet$module
      
      gorsat.parser.FunctionWrapper.ReducerSet$ ReducerSet$module
    - returnType
      
      java.lang.String returnType
    - signature
      
      java.lang.String signature
- Class gorsat.parser.FunctionWrapper$ extends scala.runtime.AbstractFunction3<java.lang.String,java.lang.String,java.lang.Object,gorsat.parser.FunctionWrapper> implements Serializable
  - Serialization Methods
    - readResolve
      
      private java.lang.Object readResolve()
- Class gorsat.parser.IteratorCvp extends java.lang.Object implements Serializable
  - Serialized Fields
    - curEnd
      
      int curEnd
    - curIndex
      
      int curIndex
    - curStart
      
      int curStart
    - cvp
      
      org.gorpipe.gor.model.ColumnValueProvider cvp
    - delimiter
      
      java.lang.String delimiter
    - next
      
      scala.Function0<scala.runtime.BoxedUnit> next
    - singleCharDelimiter
      
      char singleCharDelimiter
    - source
      
      java.lang.String source
    - start
      
      int start
- Class gorsat.parser.IteratorCvp$ extends scala.runtime.AbstractFunction3<org.gorpipe.gor.model.ColumnValueProvider,java.lang.String,java.lang.String,gorsat.parser.IteratorCvp> implements Serializable
  - Serialization Methods
    - readResolve
      
      private java.lang.Object readResolve()
- Class gorsat.parser.ReplaceCvp extends java.lang.Object implements Serializable
  - Serialized Fields
    - cvp
      
      org.gorpipe.gor.model.ColumnValueProvider cvp
    - replaceCol
      
      int replaceCol
- Class gorsat.parser.ReplaceCvp$ extends scala.runtime.AbstractFunction1<org.gorpipe.gor.model.ColumnValueProvider,gorsat.parser.ReplaceCvp> implements Serializable
  - Serialization Methods
    - readResolve
      
      private java.lang.Object readResolve()
- Class gorsat.parser.TypedExpression extends java.lang.Object implements Serializable
  - Serialized Fields
    - expression
      
      java.lang.Object expression
    - expressionType
      
      java.lang.String expressionType
- Class gorsat.parser.TypedExpression$ extends scala.runtime.AbstractFunction2<java.lang.String,java.lang.Object,gorsat.parser.TypedExpression> implements Serializable
  - Serialization Methods
    - readResolve
      
      private java.lang.Object readResolve()

Package gorsat.process

Class gorsat.process.ProcessIteratorAdaptor extends org.gorpipe.gor.model.GenomicIteratorBase implements Serializable

Serialized Fields

allowerror
```
boolean allowerror
```
breader
```
java.io.BufferedReader breader
```
errorStr
```
java.lang.StringBuilder errorStr
```
is
```
java.io.InputStream is
```
line
```
java.lang.String line
```
mustReCheck
```
boolean mustReCheck
```
myHasNext
```
boolean myHasNext
```
nor
```
boolean nor
```

outThread

gorsat.process.ProcessIteratorAdaptor.OutThread outThread

proc
```
java.lang.Process proc
```
processName
```
java.lang.String processName
```

rowSource

java.util.Iterator<org.gorpipe.gor.model.Row> rowSource

skipheader
```
boolean skipheader
```

Class gorsat.process.SourceProvider extends java.lang.Object implements Serializable

Serialized Fields

context

org.gorpipe.gor.session.GorContext context

dynSource

gorsat.DynIterator.DynamicRowSource dynSource

executeNor
```
boolean executeNor
```
header
```
java.lang.String header
```
inputSource
```
java.lang.String inputSource
```
isNor
```
boolean isNor
```
iteratorCommand
```
java.lang.String iteratorCommand
```

source

org.gorpipe.gor.model.GenomicIterator source

usedFiles
```
java.lang.String[] usedFiles
```

Class gorsat.process.SourceProvider$ extends java.lang.Object implements Serializable
- Serialization Methods
  - readResolve
```
private java.lang.Object readResolve()
```

Package gorsat.Regression
- Class gorsat.Regression.LogisticRegressionFit extends java.lang.Object implements Serializable
  - Serialized Fields
    - b
      
      breeze.linalg.DenseVector<java.lang.Object> b
    - converged
      
      boolean converged
    - exploded
      
      boolean exploded
    - fisher
      
      scala.Option<breeze.linalg.DenseMatrix<java.lang.Object>> fisher
    - logLkhd
      
      double logLkhd
    - nIter
      
      int nIter
    - score
      
      scala.Option<breeze.linalg.DenseVector<java.lang.Object>> score
- Class gorsat.Regression.LogisticRegressionFit$ extends scala.runtime.AbstractFunction7<breeze.linalg.DenseVector<java.lang.Object>,scala.Option<breeze.linalg.DenseVector<java.lang.Object>>,scala.Option<breeze.linalg.DenseMatrix<java.lang.Object>>,java.lang.Object,java.lang.Object,java.lang.Object,java.lang.Object,gorsat.Regression.LogisticRegressionFit> implements Serializable
  - Serialization Methods
    - readResolve
      
      private java.lang.Object readResolve()
- Class gorsat.Regression.WaldStats extends java.lang.Object implements Serializable
  - Serialized Fields
    - b
      
      breeze.linalg.DenseVector<java.lang.Object> b
    - p
      
      breeze.linalg.DenseVector<java.lang.Object> p
    - se
      
      breeze.linalg.DenseVector<java.lang.Object> se
    - z
      
      breeze.linalg.DenseVector<java.lang.Object> z
- Class gorsat.Regression.WaldStats$ extends scala.runtime.AbstractFunction4<breeze.linalg.DenseVector<java.lang.Object>,breeze.linalg.DenseVector<java.lang.Object>,breeze.linalg.DenseVector<java.lang.Object>,breeze.linalg.DenseVector<java.lang.Object>,gorsat.Regression.WaldStats> implements Serializable
  - Serialization Methods
    - readResolve
      
      private java.lang.Object readResolve()
Package org.gorpipe.gor.function
- Class org.gorpipe.gor.function.GorRowFilterFunction extends java.lang.Object implements Serializable
  - Serialized Fields
    - booleanFunction
      
      scala.Function1<org.gorpipe.gor.model.ColumnValueProvider,java.lang.Object> booleanFunction
- Class org.gorpipe.gor.function.GorRowInferFunction extends java.lang.Object implements Serializable
- Class org.gorpipe.gor.function.GorRowMapFunction extends java.lang.Object implements Serializable
  - Serialized Fields
    - calcType
      
      java.lang.String calcType
    - func
      
      scala.Function1 func
- Class org.gorpipe.gor.function.GorRowQueryFunction extends java.lang.Object implements Serializable
  - Serialized Fields
    - bufferedPipeStep
      
      gorsat.Commands.Analysis bufferedPipeStep
    - header
      
      java.lang.String header
    - lra
      
      ListRowAdaptor lra
    - query
      
      java.lang.String query
Package org.gorpipe.gor.util
- Class org.gorpipe.gor.util.ByteTextBuilder extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - bytes
      
      byte[] bytes
    - pos
      
      int pos
- Class org.gorpipe.gor.util.DoubleArray extends java.lang.Object implements Serializable
  - Serialized Fields
    - array
      
      double[] array
    - pos
      
      int pos
- Class org.gorpipe.gor.util.GLongHashMap extends java.lang.Object implements Serializable
  - Serialized Fields
    - count
      
      int count
    - keys
      
      long[] keys
    - lengthminusone
      
      int lengthminusone
    - loadfactor
      
      float loadfactor
    - used
      
      int[] used
    - values
      
      int[] values
- Class org.gorpipe.gor.util.IntHashMap extends java.lang.Object implements Serializable
  - Serialized Fields
    - count
      
      int count
    - keys
      
      int[] keys
    - lengthminusone
      
      int lengthminusone
    - loadfactor
      
      float loadfactor
    - used
      
      int[] used
    - values
      
      int[] values

Package org.gorpipe.querydialogs

Class org.gorpipe.querydialogs.AbstractListBean extends BasicBean implements Serializable
- Serialized Fields
  - listenerList
```
javax.swing.event.EventListenerList listenerList
```

Class org.gorpipe.querydialogs.Argument extends AbstractListBean implements Serializable

Serialized Fields

advanced
```
boolean advanced
```

allowedValues

java.util.List<java.lang.Object> allowedValues

argDescr
```
ArgumentDescription argDescr
```
currentOperator
```
java.lang.String currentOperator
```
defaultValue
```
java.lang.Object defaultValue
```
displayWidth
```
java.lang.Integer displayWidth
```

operators

java.util.List<java.lang.String> operators

optional
```
boolean optional
```
type
```
ArgumentType type
```
value
```
java.lang.Object value
```
valuesHeader
```
java.lang.String[] valuesHeader
```
valuesPath
```
java.net.URI valuesPath
```

Class org.gorpipe.querydialogs.BasicBean extends java.lang.Object implements Serializable

serialVersionUID:

1L
- Serialized Fields
  - changeSupport
```
java.beans.PropertyChangeSupport changeSupport
```

Class org.gorpipe.querydialogs.Dialog extends AbstractListBean implements Serializable

Serialized Fields

advancedArgumentsVisible
```
boolean advancedArgumentsVisible
```

argumentListener

java.beans.PropertyChangeListener argumentListener

argumentMap

java.util.Map<java.lang.String,Argument> argumentMap

arguments

java.util.List<java.lang.String> arguments

attributes

java.util.Map<java.lang.String,? extends java.lang.Object> attributes

baseChartColumns
```
java.lang.String baseChartColumns
```
baseChartDF
```
ChartDataType baseChartDF
```
baseChartExec
```
java.lang.String baseChartExec
```
baseChartMd5Digest
```
java.lang.String baseChartMd5Digest
```
baseChartScript
```
java.lang.String baseChartScript
```
baseQuery
```
java.lang.String baseQuery
```
baseQueryMd5Digest
```
java.lang.String baseQueryMd5Digest
```
chartColumns
```
java.lang.String[] chartColumns
```
deferUpdates
```
boolean deferUpdates
```
dialogDescription
```
DialogDescription dialogDescription
```
errorMsgTemplate
```
java.lang.String errorMsgTemplate
```
executable
```
boolean executable
```

fileResolver

org.gorpipe.gor.model.FileReader fileResolver

gitSHA
```
java.lang.String gitSHA
```
hasErrorMsgTemplate
```
boolean hasErrorMsgTemplate
```
hasLongRunningQuery
```
boolean hasLongRunningQuery
```
interpolatedChart
```
java.lang.String interpolatedChart
```
interpolatedQuery
```
java.lang.String interpolatedQuery
```

longRunningQueryTemplate

java.lang.String longRunningQueryTemplate

packageVersion
```
java.lang.String packageVersion
```

queryEval

org.gorpipe.gor.model.QueryEvaluator queryEval

type
```
DialogType type
```
version
```
java.lang.String version
```

Class org.gorpipe.querydialogs.GridArgument extends StringArgument implements Serializable
- Serialized Fields
  - extractValues
```
java.lang.Boolean extractValues
```
    Defines whether grid values or grid name should be used in selector.
  - gorOnly
```
java.lang.Boolean gorOnly
```
    Defines if only gor grids should be selected.
  - requiredColumns
```
java.util.List<org.gorpipe.gor.model.RequiredColumn> requiredColumns
```
    Grid required columns.
  - requiredColumnsOnly
```
java.lang.Boolean requiredColumnsOnly
```
    Defines if only required columns may exist in grid.
Class org.gorpipe.querydialogs.RangedNumberFormatter extends javax.swing.text.NumberFormatter implements Serializable

Package org.gorpipe.querydialogs.argument
- Class org.gorpipe.querydialogs.argument.DateArgument extends Argument implements Serializable
- Class org.gorpipe.querydialogs.argument.FileArgument extends Argument implements Serializable
  - Serialized Fields
    - fileFilterComponents
      
      java.util.List<java.lang.String> fileFilterComponents
- Class org.gorpipe.querydialogs.argument.NumberArgument extends Argument implements Serializable
  - Serialized Fields
    - formatter
      
      RangedNumberFormatter formatter
    - maxTextFieldMinWidth
      
      int maxTextFieldMinWidth
    - minTextFieldMinWidth
      
      int minTextFieldMinWidth
    - valueTextFieldMinWidth
      
      int valueTextFieldMinWidth
- Class org.gorpipe.querydialogs.argument.QueryArgument extends Argument implements Serializable
  - Serialized Fields
    - query
      
      java.lang.String query
    - queryEvaluator
      
      org.gorpipe.gor.model.QueryEvaluator queryEvaluator
- Class org.gorpipe.querydialogs.argument.StringArgument extends Argument implements Serializable
  - Serialized Fields
    - format
      
      java.lang.String format
    - formatter
      
      ValueFormatter formatter
    - helpDefinition
      
      FilteringColumnDefinition helpDefinition
    - persistingValueObject
      
      SubjectLists persistingValueObject
    - quoted
      
      boolean quoted
    - singleSelection
      
      boolean singleSelection

Package org.gorpipe.querydialogs.factory

Class org.gorpipe.querydialogs.factory.PerspectiveDialog extends Dialog implements Serializable

Serialized Fields

columnGroups

java.util.List<ColumnGroup> columnGroups

dialogsFilePath
```
java.nio.file.Path dialogsFilePath
```

displayParams

PerspectiveDialogDisplayParams displayParams

htmlTemplate
```
java.lang.String htmlTemplate
```

initialColumns

java.util.Set<java.lang.Object> initialColumns

perspectives

java.util.List<Perspective> perspectives

reportCommands

java.util.List<org.gorpipe.gor.model.ReportCommand> reportCommands

reportViewer
```
ReportViewer reportViewer
```
writePath
```
java.lang.String writePath
```

Serialized Form

Package gorsat

Package gorsat.parser

Class gorsat.parser.ColumnInfo extends java.lang.Object implements Serializable

Serialized Fields

dataType

name

Class gorsat.parser.ColumnInfo$ extends scala.runtime.AbstractFunction2<java.lang.String,​java.lang.String,​gorsat.parser.ColumnInfo> implements Serializable

Serialization Methods

readResolve

Class gorsat.parser.FixedSizeIteratorCvp extends java.lang.Object implements Serializable

Serialized Fields

curIndex

cvp

itemSize

source

start

Class gorsat.parser.FixedSizeIteratorCvp$ extends scala.runtime.AbstractFunction3<org.gorpipe.gor.model.ColumnValueProvider,​java.lang.String,​java.lang.Object,​gorsat.parser.FixedSizeIteratorCvp> implements Serializable

Serialization Methods

readResolve

Class gorsat.parser.FunctionWrapper extends java.lang.Object implements Serializable

Serialized Fields

bitmap$0

expectedArgs

mangledName

myFunction

name

ReducerSet$module

returnType

signature

Class gorsat.parser.FunctionWrapper$ extends scala.runtime.AbstractFunction3<java.lang.String,​java.lang.String,​java.lang.Object,​gorsat.parser.FunctionWrapper> implements Serializable

Serialization Methods

readResolve

Class gorsat.parser.IteratorCvp extends java.lang.Object implements Serializable

Serialized Fields

curEnd

curIndex

curStart

cvp

delimiter

next

singleCharDelimiter

source

start

Class gorsat.parser.IteratorCvp$ extends scala.runtime.AbstractFunction3<org.gorpipe.gor.model.ColumnValueProvider,​java.lang.String,​java.lang.String,​gorsat.parser.IteratorCvp> implements Serializable

Serialization Methods

readResolve

Class gorsat.parser.ReplaceCvp extends java.lang.Object implements Serializable

Serialized Fields

cvp

replaceCol

Class gorsat.parser.ReplaceCvp$ extends scala.runtime.AbstractFunction1<org.gorpipe.gor.model.ColumnValueProvider,​gorsat.parser.ReplaceCvp> implements Serializable

Serialization Methods

readResolve

Class gorsat.parser.TypedExpression extends java.lang.Object implements Serializable

Serialized Fields

expression

expressionType

Class gorsat.parser.TypedExpression$ extends scala.runtime.AbstractFunction2<java.lang.String,​java.lang.Object,​gorsat.parser.TypedExpression> implements Serializable

Serialization Methods

readResolve

Package gorsat.process

Class gorsat.process.ProcessIteratorAdaptor extends org.gorpipe.gor.model.GenomicIteratorBase implements Serializable

Serialized Fields

allowerror

breader

errorStr

is

line

mustReCheck

myHasNext

nor

outThread

proc

processName

rowSource

skipheader

Class gorsat.process.SourceProvider extends java.lang.Object implements Serializable

Serialized Fields

context

Class gorsat.parser.ColumnInfo$ extends scala.runtime.AbstractFunction2<java.lang.String,java.lang.String,gorsat.parser.ColumnInfo> implements Serializable

Class gorsat.parser.FixedSizeIteratorCvp$ extends scala.runtime.AbstractFunction3<org.gorpipe.gor.model.ColumnValueProvider,java.lang.String,java.lang.Object,gorsat.parser.FixedSizeIteratorCvp> implements Serializable

Class gorsat.parser.FunctionWrapper$ extends scala.runtime.AbstractFunction3<java.lang.String,java.lang.String,java.lang.Object,gorsat.parser.FunctionWrapper> implements Serializable

Class gorsat.parser.IteratorCvp$ extends scala.runtime.AbstractFunction3<org.gorpipe.gor.model.ColumnValueProvider,java.lang.String,java.lang.String,gorsat.parser.IteratorCvp> implements Serializable

Class gorsat.parser.ReplaceCvp$ extends scala.runtime.AbstractFunction1<org.gorpipe.gor.model.ColumnValueProvider,gorsat.parser.ReplaceCvp> implements Serializable

Class gorsat.parser.TypedExpression$ extends scala.runtime.AbstractFunction2<java.lang.String,java.lang.Object,gorsat.parser.TypedExpression> implements Serializable