Package gorsat.process

Class ProcessSource

  • All Implemented Interfaces:
    java.lang.AutoCloseable, java.util.Iterator<org.gorpipe.gor.model.Row>, org.gorpipe.gor.model.GenomicIterator, org.gorpipe.gor.model.RowSourceStats
    Direct Known Subclasses:
    ProcessRowSource
    public abstract class ProcessSource
extends org.gorpipe.gor.model.GenomicIteratorBase
    Created by sigmar on 12/02/16.

    • Field Summary

      • Fields inherited from class org.gorpipe.gor.model.GenomicIteratorBase

        statsSenderAnnotation, statsSenderName

    • Constructor Summary

      Constructors 
      Constructor Description
      ProcessSource()  

    • Method Summary

      All Methods Instance Methods Abstract Methods 
      Modifier and Type Method Description
      abstract java.io.InputStream setRange​(java.lang.String seekChr, int seekPos, int endPos)  

      • Methods inherited from class org.gorpipe.gor.model.GenomicIteratorBase

        clone, decStat, getBufferSize, getContext, getHeader, getSourceName, incStat, init, initStats, isSourceAlreadyInserted, setBufferSize, setContext, setHeader, setSourceAlreadyInserted, setSourceName

      • Methods inherited from class java.lang.Object

        equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

      • Methods inherited from interface org.gorpipe.gor.model.GenomicIterator

        close, filter, getMonitor, isBuffered, moveToPosition, moveToPosition, pushdownCalc, pushdownCmd, pushdownFilter, pushdownGor, pushdownSelect, pushdownTop, pushdownWrite, seek, seek, select

      • Methods inherited from interface java.util.Iterator

        forEachRemaining, hasNext, next, remove

      • Methods inherited from interface org.gorpipe.gor.model.RowSourceStats

        getAvgBasesPerMilliSecond, getAvgBatchSize, getAvgRowsPerMilliSecond, getAvgSeekTimeMilliSecond, getCurrentBatchLoc, getCurrentBatchRow, getCurrentBatchSize

    • Constructor Detail

      • ProcessSource

        public ProcessSource()

    • Method Detail

      • setRange

        public abstract java.io.InputStream setRange​(java.lang.String seekChr,
                                             int seekPos,
                                             int endPos)