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A

AbstractDialogFactory<T extends Dialog> - Class in org.gorpipe.querydialogs.factory

A factory responsible for building Dialogs from a supplied YAML file.

AbstractDialogFactory(FileReader, QueryEvaluator, boolean) - Constructor for class org.gorpipe.querydialogs.factory.AbstractDialogFactory

Constructs a factory with no registered argument builders

AbstractListBean - Class in org.gorpipe.querydialogs

Implements ListModel event listening funtionality

AbstractListBean() - Constructor for class org.gorpipe.querydialogs.AbstractListBean

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Calc_commandContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Calc_expression_listContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Calc_expressionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Column_listContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Column_nameContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Column_numberContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Column_rangeContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Column_refContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Column_rename_ruleContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Column_wildcardContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Create_statementContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Def_macroContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.FactorContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.FilenameContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Function_exprContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Function_nameContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Generic_commandContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Gornor_expressionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Hide_commandContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.In_expressionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Input_sourceContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Macro_nameContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Macro_valueContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Nested_queryContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Not_rel_exprContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.NumberContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Option_valueContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Optional_power_factorContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.OptionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Paren_exprContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Paren_rel_exprContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Power_factorContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Predicate_factorContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.PredicateContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Query_expressionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Rel_exprContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Rel_termContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Rename_commandContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Replace_commandContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Select_commandContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Signed_factorContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.String_literal_listContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.String_literalContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.TermContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.ValueContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.VariableContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relation_nameContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relationContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.Where_commandContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.gorpipe.gor.GorScriptParser.XfactorContext

add(double) - Method in class gorsat.parser.CalcLambdaBoolean

add(double) - Method in class gorsat.parser.CalcLambdaDouble

add(double) - Method in class gorsat.parser.CalcLambdaDoubleConstant

add(double) - Method in class gorsat.parser.CalcLambdaInteger

add(double) - Method in class gorsat.parser.CalcLambdaIntegerConstant

add(double) - Method in class gorsat.parser.CalcLambdaLong

add(double) - Method in class gorsat.parser.CalcLambdaLongConstant

add(double) - Method in class gorsat.parser.CalcLambdaString

add(double) - Method in class gorsat.parser.CalcLambdaStringConstant

add(double) - Method in class gorsat.parser.CalcLambdaVariable

add(double) - Method in interface gorsat.parser.TypedCalcLambda

add(int) - Method in class gorsat.parser.CalcLambdaBoolean

add(int) - Method in class gorsat.parser.CalcLambdaDouble

add(int) - Method in class gorsat.parser.CalcLambdaDoubleConstant

add(int) - Method in class gorsat.parser.CalcLambdaInteger

add(int) - Method in class gorsat.parser.CalcLambdaIntegerConstant

add(int) - Method in class gorsat.parser.CalcLambdaLong

add(int) - Method in class gorsat.parser.CalcLambdaLongConstant

add(int) - Method in class gorsat.parser.CalcLambdaString

add(int) - Method in class gorsat.parser.CalcLambdaStringConstant

add(int) - Method in class gorsat.parser.CalcLambdaVariable

add(int) - Method in interface gorsat.parser.TypedCalcLambda

add(long) - Method in class gorsat.parser.CalcLambdaBoolean

add(long) - Method in class gorsat.parser.CalcLambdaDouble

add(long) - Method in class gorsat.parser.CalcLambdaDoubleConstant

add(long) - Method in class gorsat.parser.CalcLambdaInteger

add(long) - Method in class gorsat.parser.CalcLambdaIntegerConstant

add(long) - Method in class gorsat.parser.CalcLambdaLong

add(long) - Method in class gorsat.parser.CalcLambdaLongConstant

add(long) - Method in class gorsat.parser.CalcLambdaString

add(long) - Method in class gorsat.parser.CalcLambdaStringConstant

add(long) - Method in class gorsat.parser.CalcLambdaVariable

add(long) - Method in interface gorsat.parser.TypedCalcLambda

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaBoolean

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaDouble

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaDoubleConstant

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaInteger

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaIntegerConstant

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaLong

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaLongConstant

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaString

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaStringConstant

add(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaVariable

add(CalcLambdaDouble) - Method in interface gorsat.parser.TypedCalcLambda

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaBoolean

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaDouble

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaDoubleConstant

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaInteger

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaIntegerConstant

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaLong

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaLongConstant

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaString

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaStringConstant

add(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaVariable

add(CalcLambdaInteger) - Method in interface gorsat.parser.TypedCalcLambda

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaBoolean

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaDouble

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaDoubleConstant

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaInteger

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaIntegerConstant

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaLong

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaLongConstant

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaString

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaStringConstant

add(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaVariable

add(CalcLambdaLong) - Method in interface gorsat.parser.TypedCalcLambda

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaBoolean

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaDouble

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaDoubleConstant

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaInteger

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaIntegerConstant

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaLong

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaLongConstant

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaString

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaStringConstant

add(CalcLambdaString) - Method in class gorsat.parser.CalcLambdaVariable

add(CalcLambdaString) - Method in interface gorsat.parser.TypedCalcLambda

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaBoolean

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaDouble

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaDoubleConstant

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaInteger

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaIntegerConstant

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaLong

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaLongConstant

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaString

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaStringConstant

add(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaVariable

add(CalcLambdaVariable) - Method in interface gorsat.parser.TypedCalcLambda

add(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaString

add(String) - Method in class gorsat.parser.CalcLambdaBoolean

add(String) - Method in class gorsat.parser.CalcLambdaDouble

add(String) - Method in class gorsat.parser.CalcLambdaDoubleConstant

add(String) - Method in class gorsat.parser.CalcLambdaInteger

add(String) - Method in class gorsat.parser.CalcLambdaIntegerConstant

add(String) - Method in class gorsat.parser.CalcLambdaLong

add(String) - Method in class gorsat.parser.CalcLambdaLongConstant

add(String) - Method in class gorsat.parser.CalcLambdaString

add(String) - Method in class gorsat.parser.CalcLambdaStringConstant

add(String) - Method in class gorsat.parser.CalcLambdaVariable

add(String) - Method in interface gorsat.parser.TypedCalcLambda

add(Row) - Method in class gorsat.RowBuffer

addData(int, double, double, double) - Method in class gorsat.gtgen.GTGen

addData(int, int, int) - Method in class gorsat.gtgen.GTGen

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaBoolean

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDouble

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDoubleConstant

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaInteger

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaIntegerConstant

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLong

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLongConstant

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaString

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaStringConstant

addedTo(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaVariable

addedTo(TypedCalcLambda) - Method in interface gorsat.parser.TypedCalcLambda

addListDataListener(ListDataListener) - Method in class org.gorpipe.querydialogs.AbstractListBean

addMultipleOf(double[], double, double[], int, int) - Static method in class gorsat.Regression.LinearAlgebra

Adds a * y to x.

addNewReportToViewer() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

addPropertyChangeListener(PropertyChangeListener) - Method in class org.gorpipe.querydialogs.BasicBean

Adds a PropertyChangeListener to the listener list.

addPropertyChangeListener(String, PropertyChangeListener) - Method in class org.gorpipe.querydialogs.BasicBean

Adds a PropertyChangeListener to the listener list for a specific property.

addReportToViewer(PerspectiveDialog) - Method in interface org.gorpipe.querydialogs.factory.ReportViewer

addSpecialVars() - Method in class gorsat.parser.CalcCompiler

addVariant(String) - Method in class org.gorpipe.gor.gava.VariantAssociation

Add a variant.

AdjustedGORLine - Class in gorsat.external.plink

AdjustedGORLine(String) - Constructor for class gorsat.external.plink.AdjustedGORLine

AdjustedGORLineIterator - Class in gorsat.external.plink

AdjustedGORLineIterator(Stream<Row>) - Constructor for class gorsat.external.plink.AdjustedGORLineIterator

advancedArgumentsVisible() - Method in class org.gorpipe.querydialogs.Dialog

allowedValues - Variable in class org.gorpipe.querydialogs.Argument

allowError() - Method in class gorsat.process.GorJavaUtilities.CmdParams

AND - Static variable in class org.gorpipe.gor.GorScriptLexer

AND - Static variable in class org.gorpipe.gor.GorScriptParser

AND() - Method in class org.gorpipe.gor.GorScriptParser.Rel_termContext

AND(int) - Method in class org.gorpipe.gor.GorScriptParser.Rel_termContext

apply(Row) - Method in class org.gorpipe.gor.function.GorRowMapFunction

apply(Row) - Method in class org.gorpipe.gor.function.GorRowQueryFunction

apply(Row, Row) - Method in class org.gorpipe.gor.function.GorRowInferFunction

apply(T) - Method in class org.gorpipe.gor.function.GorRowFilterFunction

argument() - Method in class org.gorpipe.gor.GorScriptParser

argument() - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

argument(int) - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

Argument - Class in org.gorpipe.querydialogs

A base class for all arguments.

Argument(Argument) - Constructor for class org.gorpipe.querydialogs.Argument

Constructor that copies the input argument.

Argument(ArgumentType, ArgumentDescription, Boolean, Object, List<? extends Object>, URI, List<String>, Boolean, Integer) - Constructor for class org.gorpipe.querydialogs.Argument

Base constructor for all arguments.

ArgumentBuilder - Class in org.gorpipe.querydialogs.factory

Base class for all argument builders.

ArgumentBuilder(FileReader) - Constructor for class org.gorpipe.querydialogs.factory.ArgumentBuilder

ArgumentContent - Class in org.gorpipe.querydialogs.factory

Class for perspective dialog argument content.

ArgumentContent(String) - Constructor for class org.gorpipe.querydialogs.factory.ArgumentContent

Constructor.

ArgumentContent.Format - Enum in org.gorpipe.querydialogs.factory

Definition of argument content formats.

ArgumentContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.ArgumentContext

ArgumentDescription - Class in org.gorpipe.querydialogs

Argument description class.

ArgumentDescription(String, String, String, String) - Constructor for class org.gorpipe.querydialogs.ArgumentDescription

argumentMap - Variable in class org.gorpipe.querydialogs.Dialog

ArgumentType - Class in org.gorpipe.querydialogs

Enumeration of argument types.

ArgumentType(int, String) - Constructor for class org.gorpipe.querydialogs.ArgumentType

ArgumentType(int, String, Integer) - Constructor for class org.gorpipe.querydialogs.ArgumentType

asList(String) - Method in class gorsat.process.SessionBasedQueryEvaluator

asValue(String) - Method in class gorsat.process.SessionBasedQueryEvaluator

attributes - Variable in class org.gorpipe.querydialogs.Dialog

available() - Method in class gorsat.RowBuffer

B

BaseStreamIterator - Class in gorsat.process

Iterator that is based on stream coming from the Supplier provided.

BaseStreamIterator(Supplier<Stream<String>>) - Constructor for class gorsat.process.BaseStreamIterator

BasicBean - Class in org.gorpipe.querydialogs

Bean that provides basic support for Java beans.

BasicBean() - Constructor for class org.gorpipe.querydialogs.BasicBean

BATCHBUFFERFILLTIME_KEY - Static variable in interface gorsat.BatchedReadSourceConfig

BatchedPipeStepIteratorAdaptor - Class in gorsat

Created by sigmar on 05/05/2017.

BatchedPipeStepIteratorAdaptor(Iterator<? extends Row>, Analysis, boolean, String, BatchedReadSourceConfig) - Constructor for class gorsat.BatchedPipeStepIteratorAdaptor

BatchedPipeStepIteratorAdaptor(Iterator<? extends Row>, Analysis, String, BatchedReadSourceConfig) - Constructor for class gorsat.BatchedPipeStepIteratorAdaptor

BatchedReadSource - Class in gorsat

A wrapper rowSource reading the child rowSource in a thread into a buffer and offering to the main thread in batches

BatchedReadSource(Iterator<? extends Row>, BatchedReadSourceConfig, String, GorMonitor) - Constructor for class gorsat.BatchedReadSource

BatchedReadSource(GenomicIterator, BatchedReadSourceConfig) - Constructor for class gorsat.BatchedReadSource

BatchedReadSourceConfig - Interface in gorsat

Created by sigmar on 26/04/2017.

BATCHEDREADSOURCETIMETRIGGERMS_KEY - Static variable in interface gorsat.BatchedReadSourceConfig

BATCHLOGINTERVALMS_KEY - Static variable in interface gorsat.BatchedReadSourceConfig

BATCHMAXGORLINES_KEY - Static variable in interface gorsat.BatchedReadSourceConfig

BATCHOFFERTIMEOUTMS_KEY - Static variable in interface gorsat.BatchedReadSourceConfig

benjamini_hochberg(double[], double[]) - Static method in class gorsat.process.StatisticalAdjustment

Runs a Benjamini Hochberg correction on an ordered vector of p values.

benjamini_yekutieli(double[], double[]) - Static method in class gorsat.process.StatisticalAdjustment

Runs a Benjamini-Yekutieli correction on an ordered vector of p values.

beta - Variable in class gorsat.Regression.LinearRegression

beta - Variable in class gorsat.Regression.LogisticRegression

betaError - Variable in class gorsat.Regression.LinearRegression

BINARY - gorsat.process.GorJavaUtilities.Phenotypes

bonferroni(double, int) - Static method in class gorsat.process.StatisticalAdjustment

bucketCreator(BucketCreator<T>) - Method in class org.gorpipe.gor.manager.BucketManager.Builder

BucketCreator<T extends org.gorpipe.gor.table.BucketableTableEntry> - Interface in org.gorpipe.gor.manager

Helper class to create bucket files from bucket descriptions.

BucketCreatorGorPipe<T extends org.gorpipe.gor.table.BucketableTableEntry> - Class in org.gorpipe.gor.manager

Helper class to create bucket file from bucket description.

BucketCreatorGorPipe() - Constructor for class org.gorpipe.gor.manager.BucketCreatorGorPipe

BucketCreatorGorPipe(int) - Constructor for class org.gorpipe.gor.manager.BucketCreatorGorPipe

bucketize() - Method in class org.gorpipe.gor.manager.BucketManager

bucketize(Path, BucketManager.BucketPackLevel, int, int, List<Path>) - Method in class org.gorpipe.gor.manager.TableManager

Bucketize the given table.

bucketize(BucketManager.BucketPackLevel, int) - Method in class org.gorpipe.gor.manager.BucketManager

bucketize(BucketManager.BucketPackLevel, int, List<Path>, boolean) - Method in class org.gorpipe.gor.manager.BucketManager

Bucketize the given table.

BucketManager<T extends org.gorpipe.gor.table.BucketableTableEntry> - Class in org.gorpipe.gor.manager

BucketManager(BaseTable<T>) - Constructor for class org.gorpipe.gor.manager.BucketManager

Default constructor.

BucketManager.BucketPackLevel - Enum in org.gorpipe.gor.manager

BucketManager.Builder<T extends org.gorpipe.gor.table.BucketableTableEntry> - Class in org.gorpipe.gor.manager

bucketSize(int) - Method in class org.gorpipe.gor.manager.BucketManager.Builder

bucketSize(int) - Method in class org.gorpipe.gor.manager.TableManager.Builder

bufferedPipeStep - Variable in class org.gorpipe.gor.function.GorRowQueryFunction

build() - Method in class org.gorpipe.gor.manager.BucketManager.Builder

build() - Method in class org.gorpipe.gor.manager.TableManager.Builder

build(String, Map<String, ?>) - Method in class org.gorpipe.querydialogs.factory.builder.QueryArgumentBuilder

build(String, Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.ArgumentBuilder

Builds an arguments based on supplied attributes.

build(String, Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.builder.DateArgumentBuilder

build(String, Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.builder.FileArgumentBuilder

build(String, Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.builder.NumberArgumentBuilder

build(String, Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.builder.StringArgumentBuilder

build(String, Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.GridArgumentBuilder

buildArgument(String, Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

buildDialog(String, Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

buildDialog(String, Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialogFactory

buildDialogs(Reader, String) - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

Attempts to read and parse the given file as a YAML file and convert the resulting data structure to a list of Dialogs

buildDialogs(String) - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

buildDialogs(String) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialogFactory

buildDialogs(String, byte[]) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialogFactory

buildDialogs(String, String) - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

buildDialogs(String, String) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialogFactory

buildDialogs(Path) - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

buildDialogs(Path) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialogFactory

builder(Path) - Static method in class gorsat.parquet.GorParquetWriter

C

CALC - Static variable in class org.gorpipe.gor.GorScriptLexer

CALC - Static variable in class org.gorpipe.gor.GorScriptParser

CALC() - Method in class org.gorpipe.gor.GorScriptParser.Calc_commandContext

calc_command() - Method in class org.gorpipe.gor.GorScriptParser

calc_command() - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

Calc_commandContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Calc_commandContext

calc_expression() - Method in class org.gorpipe.gor.GorScriptParser

calc_expression_list() - Method in class org.gorpipe.gor.GorScriptParser.Calc_commandContext

calc_expression_list() - Method in class org.gorpipe.gor.GorScriptParser

calc_expression_list() - Method in class org.gorpipe.gor.GorScriptParser.Replace_commandContext

Calc_expression_listContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Calc_expression_listContext

Calc_expressionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Calc_expressionContext

CalcCompiler - Class in gorsat.parser

CalcCompiler implements an Antlr parse tree visitor, starting on an expression node.

CalcCompiler() - Constructor for class gorsat.parser.CalcCompiler

CalcCompiler(ParseArith) - Constructor for class gorsat.parser.CalcCompiler

calcInterpolatedQuery() - Method in class org.gorpipe.querydialogs.Dialog

CalcLambdaBoolean - Class in gorsat.parser

CalcLambdaBoolean(CvpBooleanLambda) - Constructor for class gorsat.parser.CalcLambdaBoolean

CalcLambdaDouble - Class in gorsat.parser

CalcLambdaDouble(CvpDoubleLambda) - Constructor for class gorsat.parser.CalcLambdaDouble

CalcLambdaDoubleConstant - Class in gorsat.parser

CalcLambdaInteger - Class in gorsat.parser

CalcLambdaInteger(CvpIntegerLambda) - Constructor for class gorsat.parser.CalcLambdaInteger

CalcLambdaIntegerConstant - Class in gorsat.parser

CalcLambdaLong - Class in gorsat.parser

CalcLambdaLong(CvpLongLambda) - Constructor for class gorsat.parser.CalcLambdaLong

CalcLambdaLongConstant - Class in gorsat.parser

CalcLambdaNumeric - Class in gorsat.parser

CalcLambdaNumeric() - Constructor for class gorsat.parser.CalcLambdaNumeric

CalcLambdaString - Class in gorsat.parser

CalcLambdaString(CvpStringLambda) - Constructor for class gorsat.parser.CalcLambdaString

CalcLambdaStringConstant - Class in gorsat.parser

CalcLambdaStringConstant(String) - Constructor for class gorsat.parser.CalcLambdaStringConstant

CalcLambdaVariable - Class in gorsat.parser

CalcLambdaVariable(int, String) - Constructor for class gorsat.parser.CalcLambdaVariable

calcType - Variable in class org.gorpipe.gor.function.GorRowMapFunction

calculateValues() - Method in class org.gorpipe.gor.gava.VariantAssociation

Calculate the p-value and other values for the current genetic feature.

calcVariantLogLikelihood(VariantCounts, int[]) - Method in class org.gorpipe.gor.gava.GavaLogLikelihood

Calculate the log-likelihood for a single variant (using the regular inheritance model).

call() - Method in class gorsat.external.plink.PlinkAdjustment

casePenetrance - Variable in class org.gorpipe.gor.gava.GavaLogLikelihood

Case penetrance (0 for no locus hetreogeneity, -1 for no constraint).

category - Variable in class org.gorpipe.querydialogs.factory.PerspectiveDialogDisplayParams

Category name.

channelNames - Static variable in class org.gorpipe.gor.GorScriptLexer

characteristics() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

ChartDataType - Enum in org.gorpipe.querydialogs

CHECK_ITEMS - Static variable in class org.gorpipe.querydialogs.ArgumentType

CHECK_ITEMS_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

checkAllowed(Object) - Method in class org.gorpipe.querydialogs.Argument

checkAllowed(Object) - Method in class org.gorpipe.querydialogs.argument.QueryArgument

checkBasicRules(byte[], byte[], byte[]) - Method in class org.gorpipe.gor.haplotype.GBasicRulesCalculator

Check basic rules (inhertance error and phase) at an single autosomal locus for a child in a triad.

checkIfLongRunningQuery() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Determine whether the query should be run as a long query which implies that the results of the query will not be streamed to the SM user but instead the results are saved to a directory of the user´s choice.

checkNested(String, GorSession, StringBuilder) - Static method in class gorsat.process.ProcessRowSource

choleskyFactorize(double[][], int) - Static method in class gorsat.Regression.LinearAlgebra

Decomposes the matrix to A = UU^T where U is upper triangular.

cleanOldBucketFiles(TableLock, boolean) - Method in class org.gorpipe.gor.manager.BucketManager

Cleans up bucketFiles that are not in use and have not been accessed for a given period of time.

clear() - Method in class gorsat.RowBuffer

clear() - Method in class org.gorpipe.gor.function.ListRowAdaptor

clearHints(String) - Static method in class gorsat.process.GorJavaUtilities

clone() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

close() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

close() - Method in class gorsat.BatchedReadSource

close() - Method in class gorsat.external.plink.AdjustedGORLineIterator

close() - Method in class gorsat.external.plink.GORLine

close() - Method in class gorsat.process.BaseStreamIterator

close() - Method in class gorsat.process.NordIterator

close() - Method in class gorsat.process.ProcessIteratorAdaptor

close() - Method in class gorsat.process.ProcessRowSource

close() - Method in class org.gorpipe.gor.clients.LocalFileCacheClient

close() - Method in class org.gorpipe.gor.function.GorRowQueryFunction

CLOSE_BRACE - Static variable in class org.gorpipe.gor.GorScriptLexer

CLOSE_BRACE - Static variable in class org.gorpipe.gor.GorScriptParser

CLOSE_BRACE() - Method in class org.gorpipe.gor.GorScriptParser.Column_rename_ruleContext

CLOSE_PAREN - Static variable in class org.gorpipe.gor.GorScriptLexer

CLOSE_PAREN - Static variable in class org.gorpipe.gor.GorScriptParser

CLOSE_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Column_wildcardContext

CLOSE_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

CLOSE_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

CLOSE_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

CLOSE_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Nested_queryContext

CLOSE_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Paren_exprContext

CLOSE_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Paren_rel_exprContext

CLOSE_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.String_literal_listContext

closeTemplateSource(Object) - Method in class org.gorpipe.querydialogs.templating.NetworkTemplateLoader

COLNAME - Static variable in class gorsat.parser.HeaderCVP

COLNUM - Static variable in class gorsat.parser.HeaderCVP

column_list() - Method in class org.gorpipe.gor.GorScriptParser.Calc_commandContext

column_list() - Method in class org.gorpipe.gor.GorScriptParser

Column_listContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Column_listContext

column_name() - Method in class org.gorpipe.gor.GorScriptParser.Column_listContext

column_name() - Method in class org.gorpipe.gor.GorScriptParser

column_name() - Method in class org.gorpipe.gor.GorScriptParser.Column_refContext

column_name() - Method in class org.gorpipe.gor.GorScriptParser.Column_wildcardContext

column_name(int) - Method in class org.gorpipe.gor.GorScriptParser.Column_listContext

Column_nameContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Column_nameContext

column_number() - Method in class org.gorpipe.gor.GorScriptParser

column_number() - Method in class org.gorpipe.gor.GorScriptParser.Column_refContext

Column_numberContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Column_numberContext

column_range() - Method in class org.gorpipe.gor.GorScriptParser

column_range() - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

column_range(int) - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

Column_rangeContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Column_rangeContext

column_ref() - Method in class org.gorpipe.gor.GorScriptParser.Column_rangeContext

column_ref() - Method in class org.gorpipe.gor.GorScriptParser

column_ref() - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

column_ref(int) - Method in class org.gorpipe.gor.GorScriptParser.Column_rangeContext

column_ref(int) - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

Column_refContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Column_refContext

column_rename_rule() - Method in class org.gorpipe.gor.GorScriptParser

column_rename_rule() - Method in class org.gorpipe.gor.GorScriptParser.Rename_commandContext

Column_rename_ruleContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Column_rename_ruleContext

column_selection() - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

column_selection() - Method in class org.gorpipe.gor.GorScriptParser

column_selection() - Method in class org.gorpipe.gor.GorScriptParser.Hide_commandContext

column_selection() - Method in class org.gorpipe.gor.GorScriptParser.Rename_commandContext

column_selection() - Method in class org.gorpipe.gor.GorScriptParser.Replace_commandContext

column_selection() - Method in class org.gorpipe.gor.GorScriptParser.Select_commandContext

Column_selectionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Column_selectionContext

column_wildcard() - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

column_wildcard() - Method in class org.gorpipe.gor.GorScriptParser

column_wildcard(int) - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

Column_wildcardContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Column_wildcardContext

ColumnGroup - Class in org.gorpipe.querydialogs.factory

Holds a definition of columns that should be grouped together.

ColumnGroup(String) - Constructor for class org.gorpipe.querydialogs.factory.ColumnGroup

ColumnGroup(String, String, String) - Constructor for class org.gorpipe.querydialogs.factory.ColumnGroup

ColumnGroup(String, String, String, boolean, int) - Constructor for class org.gorpipe.querydialogs.factory.ColumnGroup

COLUMNMODEL - org.gorpipe.querydialogs.ChartDataType

columnNames - Variable in class org.gorpipe.querydialogs.factory.ColumnGroup

Names (and order) of the columns in this group.

CombinationIterator - Class in org.gorpipe.gor.gava

Iterate through all combinations (n choose k) and provide permutations representing the combinations.

CombinationIterator(int, int) - Constructor for class org.gorpipe.gor.gava.CombinationIterator

Instantiate the iterator.

COMMA - Static variable in class org.gorpipe.gor.GorScriptLexer

COMMA - Static variable in class org.gorpipe.gor.GorScriptParser

COMMA() - Method in class org.gorpipe.gor.GorScriptParser.Calc_expression_listContext

COMMA() - Method in class org.gorpipe.gor.GorScriptParser.Column_listContext

COMMA() - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

COMMA() - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

COMMA() - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

COMMA() - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

COMMA() - Method in class org.gorpipe.gor.GorScriptParser.Option_valueContext

COMMA() - Method in class org.gorpipe.gor.GorScriptParser.String_literal_listContext

COMMA(int) - Method in class org.gorpipe.gor.GorScriptParser.Calc_expression_listContext

COMMA(int) - Method in class org.gorpipe.gor.GorScriptParser.Column_listContext

COMMA(int) - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

COMMA(int) - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

COMMA(int) - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

COMMA(int) - Method in class org.gorpipe.gor.GorScriptParser.Option_valueContext

COMMA(int) - Method in class org.gorpipe.gor.GorScriptParser.String_literal_listContext

commandCached(String, String) - Method in class org.gorpipe.gor.RequestStats

commandCreated(String, String, String, String) - Method in class org.gorpipe.gor.RequestStats

commandEnded(String) - Method in class org.gorpipe.gor.RequestStats

commandStarted(String, String, String, String) - Method in class org.gorpipe.gor.RequestStats

compare(TypedCalcLambda, int) - Method in class gorsat.parser.CalcLambdaBoolean

compare(TypedCalcLambda, int) - Method in class gorsat.parser.CalcLambdaNumeric

compare(TypedCalcLambda, int) - Method in class gorsat.parser.CalcLambdaString

compare(TypedCalcLambda, int) - Method in class gorsat.parser.CalcLambdaStringConstant

compare(TypedCalcLambda, int) - Method in class gorsat.parser.CalcLambdaVariable

compare(TypedCalcLambda, int) - Method in interface gorsat.parser.TypedCalcLambda

compare_expressions() - Method in class org.gorpipe.gor.GorScriptParser

compare_expressions() - Method in class org.gorpipe.gor.GorScriptParser.PredicateContext

Compare_expressionsContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

compareTo(AdjustedGORLine) - Method in class gorsat.external.plink.AdjustedGORLine

compareTo(AdjustedGORLineIterator) - Method in class gorsat.external.plink.AdjustedGORLineIterator

compareTo(GORLine) - Method in class gorsat.external.plink.GORLine

compute(int, int, int, int) - Static method in class org.gorpipe.gor.util.GFisherExact2by2

Compute the probability for a specific tail for the table {{A, B}, {C, D}}, that is, towards large A and D and small B and C.

computeLogLikelihood(List<CollapsedCounts>, int[], boolean) - Method in class org.gorpipe.gor.gava.DominantLogLikelihood

computeLogLikelihood(List<CollapsedCounts>, int[], boolean) - Method in class org.gorpipe.gor.gava.GavaLogLikelihood

Compute the log-likelihood ratio for a feature.

computeLogLikelihood(List<CollapsedCounts>, int[], boolean) - Method in class org.gorpipe.gor.gava.RecessiveLogLikelihood

computeLogLikelihood(List<CollapsedCounts>, int[], boolean) - Method in class org.gorpipe.gor.gava.RegularLogLikelihood

computeLogLikelihoodChiSquared(int, int, int, int) - Static method in class org.gorpipe.gor.util.GChiSquared2by2

Compute the likelihood ratio chi-squared value for the 2-by-2 table [o11 o12] [o21 o22].

computeOneTailed(int, int, int, int) - Static method in class org.gorpipe.gor.util.GFisherExact2by2

Compute the one-tailed probability for the table {{A, B}, {C, D}}.

computePearsonChiSquared(int, int, int, int) - Static method in class org.gorpipe.gor.util.GChiSquared2by2

Compute the Pearson's chi-squared value for the 2-by-2 table [o11 o12] [o21 o22].

computeTestStats() - Method in class gorsat.Regression.LogisticRegression

computeTwoTailed(int, int, int, int) - Static method in class org.gorpipe.gor.util.GFisherExact2by2

Compute the two-tailed probability for the table {{A, B}, {C, D}}.

CONNECTIONRETRIES_KEY - Static variable in interface gorsat.BatchedReadSourceConfig

CONNECTIONRETRYEXPONENT_KEY - Static variable in interface gorsat.BatchedReadSourceConfig

CONNECTIONRETRYTIME_KEY - Static variable in interface gorsat.BatchedReadSourceConfig

CONSOLIDATE - org.gorpipe.gor.manager.BucketManager.BucketPackLevel

Constant - Interface in gorsat.parser

contains(String) - Method in class org.gorpipe.querydialogs.factory.ColumnGroup

containsEndRow() - Method in class gorsat.RowBuffer

controlPenetrance - Variable in class org.gorpipe.gor.gava.GavaLogLikelihood

Control penetrance (0 for complete penetrance, -1 for no constraint).

copyArgument() - Method in class org.gorpipe.querydialogs.Argument

Make a copy of the argument.

copyArgument() - Method in class org.gorpipe.querydialogs.argument.DateArgument

copyArgument() - Method in class org.gorpipe.querydialogs.argument.FileArgument

copyArgument() - Method in class org.gorpipe.querydialogs.argument.NumberArgument

copyArgument() - Method in class org.gorpipe.querydialogs.argument.QueryArgument

copyArgument() - Method in class org.gorpipe.querydialogs.argument.StringArgument

copyArgument() - Method in class org.gorpipe.querydialogs.GridArgument

copyArguments() - Method in class org.gorpipe.querydialogs.Dialog

create() - Method in class gorsat.process.GenericRunnerFactory

create() - Method in class gorsat.process.GenericSessionFactory

create(FileReader, QueryEvaluator) - Static method in class org.gorpipe.querydialogs.factory.PerspectiveDialogFactory

Create a new perspective dialog factory.

create(FileReader, QueryEvaluator, boolean) - Static method in class org.gorpipe.querydialogs.factory.PerspectiveDialogFactory

Create a new perspective dialog factory.

CREATE - Static variable in class org.gorpipe.gor.GorScriptLexer

CREATE - Static variable in class org.gorpipe.gor.GorScriptParser

CREATE() - Method in class org.gorpipe.gor.GorScriptParser.Create_statementContext

create_statement() - Method in class org.gorpipe.gor.GorScriptParser

create_statement() - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

create_statement(int) - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

Create_statementContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Create_statementContext

createBuckets(BaseTable<T>, Map<Path, List<T>>, URI) - Method in interface org.gorpipe.gor.manager.BucketCreator

Create bucket files.

createBuckets(BaseTable<T>, Map<Path, List<T>>, URI) - Method in class org.gorpipe.gor.manager.BucketCreatorGorPipe

createChromoLookup() - Static method in class gorsat.process.ProcessRowSource

createdFiles - Variable in class org.gorpipe.gor.RequestStats

createMapString(Map<String, String>) - Static method in class gorsat.process.GorJavaUtilities

createSymbolicLink(Path, Path) - Static method in class gorsat.process.GorJavaUtilities

CvpBooleanLambda - Interface in gorsat.parser

CvpDoubleLambda - Interface in gorsat.parser

CvpIntegerLambda - Interface in gorsat.parser

CvpLongLambda - Interface in gorsat.parser

CvpStringLambda - Interface in gorsat.parser

D

DATA_PREFIX - Static variable in class gorsat.process.NorStreamIterator

DATE - Static variable in class org.gorpipe.querydialogs.ArgumentType

DATE_FORMAT - Static variable in class org.gorpipe.querydialogs.argument.DateArgument

The date format used.

DATE_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

DateArgument - Class in org.gorpipe.querydialogs.argument

Represents an argument that expects a date value.

DateArgument(DateArgument) - Constructor for class org.gorpipe.querydialogs.argument.DateArgument

Constructor that copies the input date argument.

DateArgument(ArgumentDescription, Boolean, Object, List<? extends Object>, List<String>, Boolean, Integer) - Constructor for class org.gorpipe.querydialogs.argument.DateArgument

Constructor.

DateArgumentBuilder - Class in org.gorpipe.querydialogs.factory.builder

Responsible for building date arguments.

DateArgumentBuilder(FileReader) - Constructor for class org.gorpipe.querydialogs.factory.builder.DateArgumentBuilder

DEF - Static variable in class org.gorpipe.gor.GorScriptLexer

DEF - Static variable in class org.gorpipe.gor.GorScriptParser

DEF() - Method in class org.gorpipe.gor.GorScriptParser.Def_macroContext

def_macro() - Method in class org.gorpipe.gor.GorScriptParser

def_macro() - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

def_macro(int) - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

Def_macroContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Def_macroContext

DEFAULT_BUCKET_PACK_LEVEL - Static variable in class org.gorpipe.gor.manager.BucketManager

DEFAULT_BUCKET_SIZE - Static variable in class org.gorpipe.gor.manager.BucketManager

DEFAULT_FORMAT - Static variable in class org.gorpipe.querydialogs.util.ValueFormatter

DEFAULT_LOCK_TIMEOUT - Static variable in class org.gorpipe.gor.manager.BucketManager

DEFAULT_LOCK_TIMEOUT - Static variable in class org.gorpipe.gor.manager.TableManager

DEFAULT_LOCK_TYPE - Static variable in class org.gorpipe.gor.manager.BucketManager

DEFAULT_LOCK_TYPE - Static variable in class org.gorpipe.gor.manager.TableManager

DEFAULT_MAX_BUCKET_COUNT - Static variable in class org.gorpipe.gor.manager.BucketManager

DEFAULT_MIN_BUCKET_SIZE - Static variable in class org.gorpipe.gor.manager.BucketManager

DEFAULT_NUMBER_WORKERS - Static variable in class org.gorpipe.gor.manager.BucketCreatorGorPipe

defaultDisplayWidth - Variable in class org.gorpipe.querydialogs.ArgumentType

defaultValue - Variable in class org.gorpipe.querydialogs.Argument

DEFERRED_LIST - Static variable in class org.gorpipe.querydialogs.Argument

deferredValuesLoaded() - Method in class org.gorpipe.querydialogs.Argument

delete(Path, BaseTable.TableFilter) - Method in class org.gorpipe.gor.manager.TableManager

Delete entries from the table.

delete(Path, BucketableTableEntry...) - Method in class org.gorpipe.gor.manager.TableManager

Delete entries from the table.

deleteBuckets(boolean, Path...) - Method in class org.gorpipe.gor.manager.BucketManager

Delete the given buckets.

deleteBuckets(Path...) - Method in class org.gorpipe.gor.manager.BucketManager

Delete the given buckets.

deleteBuckets(Path, Path...) - Method in class org.gorpipe.gor.manager.TableManager

Delete the given buckets.

deleteBuckets(BaseTable, Path...) - Method in class org.gorpipe.gor.manager.TableManager

Delete the given buckets.

delta - Variable in class gorsat.Regression.LogisticRegression

detailedDescr - Variable in class org.gorpipe.querydialogs.DialogDescription

Dialog detailed description.

determineLongRunningQuery() - Method in class org.gorpipe.querydialogs.Dialog

Dialog - Class in org.gorpipe.querydialogs

A basic dialog implementation

Dialog(Map<String, ? extends Object>, FileReader, QueryEvaluator, DialogDescription, DialogType, String, String, String, String, ChartDataType, List<Argument>, String, String, String, String, String) - Constructor for class org.gorpipe.querydialogs.Dialog

DialogArgumentWrapper - Class in org.gorpipe.querydialogs.templating

A wrapper for dialog arguments.

DialogArgumentWrapper() - Constructor for class org.gorpipe.querydialogs.templating.DialogArgumentWrapper

dialogDescription - Variable in class org.gorpipe.querydialogs.Dialog

DialogDescription - Class in org.gorpipe.querydialogs

Class for describing a dialog.

DialogDescription(String, String, String, String) - Constructor for class org.gorpipe.querydialogs.DialogDescription

Constructor.

DialogType - Enum in org.gorpipe.querydialogs

The types of dialogs currently supported

DIGIT - Static variable in class org.gorpipe.gor.GorScriptLexer

DIGIT - Static variable in class org.gorpipe.gor.GorScriptParser

dim - Variable in class gorsat.Regression.LogisticRegression

displayHelp(Window) - Method in interface org.gorpipe.querydialogs.FilteringColumnDefinition

Display detailed help for the column.

displayName - Variable in class org.gorpipe.querydialogs.ArgumentDescription

displayName - Variable in class org.gorpipe.querydialogs.factory.ColumnGroup

The name to use in graphical representations of the group

DIV - Static variable in class org.gorpipe.gor.GorScriptLexer

DIV - Static variable in class org.gorpipe.gor.GorScriptParser

DIV() - Method in class org.gorpipe.gor.GorScriptParser.TermContext

DIV(int) - Method in class org.gorpipe.gor.GorScriptParser.TermContext

divide(double) - Method in class gorsat.parser.CalcLambdaBoolean

divide(double) - Method in class gorsat.parser.CalcLambdaDouble

divide(double) - Method in class gorsat.parser.CalcLambdaDoubleConstant

divide(double) - Method in class gorsat.parser.CalcLambdaInteger

divide(double) - Method in class gorsat.parser.CalcLambdaIntegerConstant

divide(double) - Method in class gorsat.parser.CalcLambdaLong

divide(double) - Method in class gorsat.parser.CalcLambdaLongConstant

divide(double) - Method in class gorsat.parser.CalcLambdaString

divide(double) - Method in class gorsat.parser.CalcLambdaStringConstant

divide(double) - Method in class gorsat.parser.CalcLambdaVariable

divide(double) - Method in interface gorsat.parser.TypedCalcLambda

divide(int) - Method in class gorsat.parser.CalcLambdaBoolean

divide(int) - Method in class gorsat.parser.CalcLambdaDouble

divide(int) - Method in class gorsat.parser.CalcLambdaDoubleConstant

divide(int) - Method in class gorsat.parser.CalcLambdaInteger

divide(int) - Method in class gorsat.parser.CalcLambdaIntegerConstant

divide(int) - Method in class gorsat.parser.CalcLambdaLong

divide(int) - Method in class gorsat.parser.CalcLambdaLongConstant

divide(int) - Method in class gorsat.parser.CalcLambdaString

divide(int) - Method in class gorsat.parser.CalcLambdaStringConstant

divide(int) - Method in class gorsat.parser.CalcLambdaVariable

divide(int) - Method in interface gorsat.parser.TypedCalcLambda

divide(long) - Method in class gorsat.parser.CalcLambdaBoolean

divide(long) - Method in class gorsat.parser.CalcLambdaDouble

divide(long) - Method in class gorsat.parser.CalcLambdaDoubleConstant

divide(long) - Method in class gorsat.parser.CalcLambdaInteger

divide(long) - Method in class gorsat.parser.CalcLambdaIntegerConstant

divide(long) - Method in class gorsat.parser.CalcLambdaLong

divide(long) - Method in class gorsat.parser.CalcLambdaLongConstant

divide(long) - Method in class gorsat.parser.CalcLambdaString

divide(long) - Method in class gorsat.parser.CalcLambdaStringConstant

divide(long) - Method in class gorsat.parser.CalcLambdaVariable

divide(long) - Method in interface gorsat.parser.TypedCalcLambda

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaBoolean

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaDouble

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaDoubleConstant

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaInteger

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaIntegerConstant

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaLong

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaLongConstant

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaString

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaStringConstant

divide(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaVariable

divide(CalcLambdaDouble) - Method in interface gorsat.parser.TypedCalcLambda

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaBoolean

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaDouble

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaDoubleConstant

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaInteger

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaIntegerConstant

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaLong

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaLongConstant

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaString

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaStringConstant

divide(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaVariable

divide(CalcLambdaInteger) - Method in interface gorsat.parser.TypedCalcLambda

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaBoolean

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaDouble

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaDoubleConstant

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaInteger

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaIntegerConstant

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaLong

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaLongConstant

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaString

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaStringConstant

divide(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaVariable

divide(CalcLambdaLong) - Method in interface gorsat.parser.TypedCalcLambda

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaBoolean

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaDouble

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaDoubleConstant

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaInteger

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaIntegerConstant

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaLong

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaLongConstant

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaString

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaStringConstant

divide(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaVariable

divide(CalcLambdaVariable) - Method in interface gorsat.parser.TypedCalcLambda

divide(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaInteger

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaBoolean

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDouble

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDoubleConstant

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaInteger

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaIntegerConstant

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLong

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLongConstant

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaString

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaStringConstant

dividedInto(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaVariable

dividedInto(TypedCalcLambda) - Method in interface gorsat.parser.TypedCalcLambda

DominantLogLikelihood - Class in org.gorpipe.gor.gava

Log likelihood calculator for dominant variant association.

DominantLogLikelihood() - Constructor for class org.gorpipe.gor.gava.DominantLogLikelihood

dotProd(double[], double[], int) - Static method in class gorsat.Regression.LinearAlgebra

Computes the dot product of the sub-vectors of x and y consisting of the elements whose index is < len.

dotProd(double[], double[], int, int) - Static method in class gorsat.Regression.LinearAlgebra

Computes the dot product of the sub-vectors of x and y consisting of the elements whose index is < upTo and ≥ offset.

DoubleQuoteString - Static variable in class org.gorpipe.gor.GorScriptLexer

DoubleQuoteString - Static variable in class org.gorpipe.gor.GorScriptParser

DoubleQuoteString() - Method in class org.gorpipe.gor.GorScriptParser.String_literalContext

doubleValue(int) - Method in class gorsat.parser.HeaderCVP

E

EMPTY_FORMAT - Static variable in class org.gorpipe.querydialogs.util.ValueFormatter

endSession() - Method in class org.gorpipe.gor.RequestStats

enlarge(int) - Method in class gorsat.RowBuffer

enterArgument(GorScriptParser.ArgumentContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.argument().

enterArgument(GorScriptParser.ArgumentContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.argument().

enterCalc_command(GorScriptParser.Calc_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.calc_command().

enterCalc_command(GorScriptParser.Calc_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.calc_command().

enterCalc_expression(GorScriptParser.Calc_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.calc_expression().

enterCalc_expression(GorScriptParser.Calc_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.calc_expression().

enterCalc_expression_list(GorScriptParser.Calc_expression_listContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.calc_expression_list().

enterCalc_expression_list(GorScriptParser.Calc_expression_listContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.calc_expression_list().

enterColumn_list(GorScriptParser.Column_listContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.column_list().

enterColumn_list(GorScriptParser.Column_listContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.column_list().

enterColumn_name(GorScriptParser.Column_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.column_name().

enterColumn_name(GorScriptParser.Column_nameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.column_name().

enterColumn_number(GorScriptParser.Column_numberContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.column_number().

enterColumn_number(GorScriptParser.Column_numberContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.column_number().

enterColumn_range(GorScriptParser.Column_rangeContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.column_range().

enterColumn_range(GorScriptParser.Column_rangeContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.column_range().

enterColumn_ref(GorScriptParser.Column_refContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.column_ref().

enterColumn_ref(GorScriptParser.Column_refContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.column_ref().

enterColumn_rename_rule(GorScriptParser.Column_rename_ruleContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.column_rename_rule().

enterColumn_rename_rule(GorScriptParser.Column_rename_ruleContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.column_rename_rule().

enterColumn_selection(GorScriptParser.Column_selectionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.column_selection().

enterColumn_selection(GorScriptParser.Column_selectionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.column_selection().

enterColumn_wildcard(GorScriptParser.Column_wildcardContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.column_wildcard().

enterColumn_wildcard(GorScriptParser.Column_wildcardContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.column_wildcard().

enterCompare_expressions(GorScriptParser.Compare_expressionsContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.compare_expressions().

enterCompare_expressions(GorScriptParser.Compare_expressionsContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.compare_expressions().

enterCreate_statement(GorScriptParser.Create_statementContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.create_statement().

enterCreate_statement(GorScriptParser.Create_statementContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.create_statement().

enterDef_macro(GorScriptParser.Def_macroContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.def_macro().

enterDef_macro(GorScriptParser.Def_macroContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.def_macro().

enterEveryRule(ParserRuleContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

enterExpression(GorScriptParser.ExpressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.expression().

enterExpression(GorScriptParser.ExpressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.expression().

enterFactor(GorScriptParser.FactorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.factor().

enterFactor(GorScriptParser.FactorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.factor().

enterFilename(GorScriptParser.FilenameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.filename().

enterFilename(GorScriptParser.FilenameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.filename().

enterFunction_call(GorScriptParser.Function_callContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.function_call().

enterFunction_call(GorScriptParser.Function_callContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.function_call().

enterFunction_expr(GorScriptParser.Function_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.function_expr().

enterFunction_expr(GorScriptParser.Function_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.function_expr().

enterFunction_name(GorScriptParser.Function_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.function_name().

enterFunction_name(GorScriptParser.Function_nameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.function_name().

enterGeneric_command(GorScriptParser.Generic_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.generic_command().

enterGeneric_command(GorScriptParser.Generic_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.generic_command().

enterGor_expression(GorScriptParser.Gor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.gor_expression().

enterGor_expression(GorScriptParser.Gor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.gor_expression().

enterGornor_expression(GorScriptParser.Gornor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.gornor_expression().

enterGornor_expression(GorScriptParser.Gornor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.gornor_expression().

enterHide_command(GorScriptParser.Hide_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.hide_command().

enterHide_command(GorScriptParser.Hide_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.hide_command().

enterIf_expr(GorScriptParser.If_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.if_expr().

enterIf_expr(GorScriptParser.If_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.if_expr().

enterIn_expression(GorScriptParser.In_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.in_expression().

enterIn_expression(GorScriptParser.In_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.in_expression().

enterIndag_expression(GorScriptParser.Indag_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.indag_expression().

enterIndag_expression(GorScriptParser.Indag_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.indag_expression().

enterInput_source(GorScriptParser.Input_sourceContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.input_source().

enterInput_source(GorScriptParser.Input_sourceContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.input_source().

enterMacro_name(GorScriptParser.Macro_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.macro_name().

enterMacro_name(GorScriptParser.Macro_nameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.macro_name().

enterMacro_value(GorScriptParser.Macro_valueContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.macro_value().

enterMacro_value(GorScriptParser.Macro_valueContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.macro_value().

enterNested_query(GorScriptParser.Nested_queryContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.nested_query().

enterNested_query(GorScriptParser.Nested_queryContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.nested_query().

enterNor_expression(GorScriptParser.Nor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.nor_expression().

enterNor_expression(GorScriptParser.Nor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.nor_expression().

enterNot_rel_expr(GorScriptParser.Not_rel_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.not_rel_expr().

enterNot_rel_expr(GorScriptParser.Not_rel_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.not_rel_expr().

enterNumber(GorScriptParser.NumberContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.number().

enterNumber(GorScriptParser.NumberContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.number().

enterOption(GorScriptParser.OptionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.option().

enterOption(GorScriptParser.OptionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.option().

enterOption_value(GorScriptParser.Option_valueContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.option_value().

enterOption_value(GorScriptParser.Option_valueContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.option_value().

enterOptional_power_factor(GorScriptParser.Optional_power_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.optional_power_factor().

enterOptional_power_factor(GorScriptParser.Optional_power_factorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.optional_power_factor().

enterOptions_and_args(GorScriptParser.Options_and_argsContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.options_and_args().

enterOptions_and_args(GorScriptParser.Options_and_argsContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.options_and_args().

enterParen_expr(GorScriptParser.Paren_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.paren_expr().

enterParen_expr(GorScriptParser.Paren_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.paren_expr().

enterParen_rel_expr(GorScriptParser.Paren_rel_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.paren_rel_expr().

enterParen_rel_expr(GorScriptParser.Paren_rel_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.paren_rel_expr().

enterPgor_expression(GorScriptParser.Pgor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.pgor_expression().

enterPgor_expression(GorScriptParser.Pgor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.pgor_expression().

enterPipe_command(GorScriptParser.Pipe_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.pipe_command().

enterPipe_command(GorScriptParser.Pipe_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.pipe_command().

enterPower_factor(GorScriptParser.Power_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.power_factor().

enterPower_factor(GorScriptParser.Power_factorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.power_factor().

enterPredicate(GorScriptParser.PredicateContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.predicate().

enterPredicate(GorScriptParser.PredicateContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.predicate().

enterPredicate_factor(GorScriptParser.Predicate_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.predicate_factor().

enterPredicate_factor(GorScriptParser.Predicate_factorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.predicate_factor().

enterQuery_expression(GorScriptParser.Query_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.query_expression().

enterQuery_expression(GorScriptParser.Query_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.query_expression().

enterRel_expr(GorScriptParser.Rel_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.rel_expr().

enterRel_expr(GorScriptParser.Rel_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.rel_expr().

enterRel_term(GorScriptParser.Rel_termContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.rel_term().

enterRel_term(GorScriptParser.Rel_termContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.rel_term().

enterRename_command(GorScriptParser.Rename_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.rename_command().

enterRename_command(GorScriptParser.Rename_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.rename_command().

enterReplace_command(GorScriptParser.Replace_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.replace_command().

enterReplace_command(GorScriptParser.Replace_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.replace_command().

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Calc_commandContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Calc_expression_listContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Calc_expressionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_listContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_nameContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_numberContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_rangeContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_refContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_rename_ruleContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_wildcardContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Create_statementContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Def_macroContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.FactorContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.FilenameContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Function_exprContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Function_nameContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Generic_commandContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Gornor_expressionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Hide_commandContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.In_expressionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Input_sourceContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Macro_nameContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Macro_valueContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Nested_queryContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Not_rel_exprContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.NumberContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Option_valueContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Optional_power_factorContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.OptionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Paren_exprContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Paren_rel_exprContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Power_factorContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Predicate_factorContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.PredicateContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Query_expressionContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Rel_exprContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Rel_termContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Rename_commandContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Replace_commandContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Select_commandContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Signed_factorContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.String_literal_listContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.String_literalContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.TermContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.ValueContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.VariableContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relation_nameContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relationContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Where_commandContext

enterRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.XfactorContext

enterScript(GorScriptParser.ScriptContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.script().

enterScript(GorScriptParser.ScriptContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.script().

enterSelect_command(GorScriptParser.Select_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.select_command().

enterSelect_command(GorScriptParser.Select_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.select_command().

enterSigned_factor(GorScriptParser.Signed_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.signed_factor().

enterSigned_factor(GorScriptParser.Signed_factorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.signed_factor().

enterString_literal(GorScriptParser.String_literalContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.string_literal().

enterString_literal(GorScriptParser.String_literalContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.string_literal().

enterString_literal_list(GorScriptParser.String_literal_listContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.string_literal_list().

enterString_literal_list(GorScriptParser.String_literal_listContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.string_literal_list().

enterTerm(GorScriptParser.TermContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.term().

enterTerm(GorScriptParser.TermContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.term().

enterValue(GorScriptParser.ValueContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.value().

enterValue(GorScriptParser.ValueContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.value().

enterVariable(GorScriptParser.VariableContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.variable().

enterVariable(GorScriptParser.VariableContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.variable().

enterVirtual_relation(GorScriptParser.Virtual_relationContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.virtual_relation().

enterVirtual_relation(GorScriptParser.Virtual_relationContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.virtual_relation().

enterVirtual_relation_name(GorScriptParser.Virtual_relation_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.virtual_relation_name().

enterVirtual_relation_name(GorScriptParser.Virtual_relation_nameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.virtual_relation_name().

enterWhere_command(GorScriptParser.Where_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.where_command().

enterWhere_command(GorScriptParser.Where_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.where_command().

enterXfactor(GorScriptParser.XfactorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Enter a parse tree produced by GorScriptParser.xfactor().

enterXfactor(GorScriptParser.XfactorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Enter a parse tree produced by GorScriptParser.xfactor().

EOF() - Method in class org.gorpipe.gor.GorScriptParser.Calc_expressionContext

EOF() - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

EOS - Static variable in class org.gorpipe.gor.GorScriptLexer

EOS - Static variable in class org.gorpipe.gor.GorScriptParser

EOS() - Method in class org.gorpipe.gor.GorScriptParser.Create_statementContext

EOS() - Method in class org.gorpipe.gor.GorScriptParser.Macro_valueContext

EOS(int) - Method in class org.gorpipe.gor.GorScriptParser.Macro_valueContext

EQ - Static variable in class org.gorpipe.gor.GorScriptLexer

EQ - Static variable in class org.gorpipe.gor.GorScriptParser

EQ() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

ERRCHAR - Static variable in class org.gorpipe.gor.GorScriptLexer

ERRCHAR - Static variable in class org.gorpipe.gor.GorScriptParser

errorMsgTemplate - Variable in class org.gorpipe.querydialogs.Dialog

estimateSize() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

evaluate(ColumnValueProvider) - Method in interface gorsat.parser.CvpBooleanLambda

evaluate(ColumnValueProvider) - Method in interface gorsat.parser.CvpDoubleLambda

evaluate(ColumnValueProvider) - Method in interface gorsat.parser.CvpIntegerLambda

evaluate(ColumnValueProvider) - Method in interface gorsat.parser.CvpLongLambda

evaluate(ColumnValueProvider) - Method in interface gorsat.parser.CvpStringLambda

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaBoolean

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDouble

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDoubleConstant

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaInteger

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaIntegerConstant

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLong

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLongConstant

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaString

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaStringConstant

evaluateBoolean(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaVariable

evaluateBoolean(ColumnValueProvider) - Method in interface gorsat.parser.TypedCalcLambda

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaBoolean

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDouble

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDoubleConstant

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaInteger

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaIntegerConstant

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLong

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLongConstant

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaString

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaStringConstant

evaluateDouble(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaVariable

evaluateDouble(ColumnValueProvider) - Method in interface gorsat.parser.TypedCalcLambda

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaBoolean

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDouble

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDoubleConstant

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaInteger

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaIntegerConstant

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLong

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLongConstant

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaString

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaStringConstant

evaluateInt(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaVariable

evaluateInt(ColumnValueProvider) - Method in interface gorsat.parser.TypedCalcLambda

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaBoolean

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDouble

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDoubleConstant

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaInteger

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaIntegerConstant

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLong

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLongConstant

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaString

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaStringConstant

evaluateLong(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaVariable

evaluateLong(ColumnValueProvider) - Method in interface gorsat.parser.TypedCalcLambda

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaBoolean

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDouble

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaDoubleConstant

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaInteger

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaIntegerConstant

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLong

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaLongConstant

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaString

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaStringConstant

evaluateString(ColumnValueProvider) - Method in class gorsat.parser.CalcLambdaVariable

evaluateString(ColumnValueProvider) - Method in interface gorsat.parser.TypedCalcLambda

exec(List) - Method in class org.gorpipe.querydialogs.templating.QueryEvalMethodModel

exec(List) - Method in class org.gorpipe.querydialogs.templating.SkipFirstMethodModel

executable - Variable in class org.gorpipe.querydialogs.Dialog

exitArgument(GorScriptParser.ArgumentContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.argument().

exitArgument(GorScriptParser.ArgumentContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.argument().

exitCalc_command(GorScriptParser.Calc_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.calc_command().

exitCalc_command(GorScriptParser.Calc_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.calc_command().

exitCalc_expression(GorScriptParser.Calc_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.calc_expression().

exitCalc_expression(GorScriptParser.Calc_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.calc_expression().

exitCalc_expression_list(GorScriptParser.Calc_expression_listContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.calc_expression_list().

exitCalc_expression_list(GorScriptParser.Calc_expression_listContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.calc_expression_list().

exitColumn_list(GorScriptParser.Column_listContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.column_list().

exitColumn_list(GorScriptParser.Column_listContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.column_list().

exitColumn_name(GorScriptParser.Column_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.column_name().

exitColumn_name(GorScriptParser.Column_nameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.column_name().

exitColumn_number(GorScriptParser.Column_numberContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.column_number().

exitColumn_number(GorScriptParser.Column_numberContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.column_number().

exitColumn_range(GorScriptParser.Column_rangeContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.column_range().

exitColumn_range(GorScriptParser.Column_rangeContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.column_range().

exitColumn_ref(GorScriptParser.Column_refContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.column_ref().

exitColumn_ref(GorScriptParser.Column_refContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.column_ref().

exitColumn_rename_rule(GorScriptParser.Column_rename_ruleContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.column_rename_rule().

exitColumn_rename_rule(GorScriptParser.Column_rename_ruleContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.column_rename_rule().

exitColumn_selection(GorScriptParser.Column_selectionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.column_selection().

exitColumn_selection(GorScriptParser.Column_selectionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.column_selection().

exitColumn_wildcard(GorScriptParser.Column_wildcardContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.column_wildcard().

exitColumn_wildcard(GorScriptParser.Column_wildcardContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.column_wildcard().

exitCompare_expressions(GorScriptParser.Compare_expressionsContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.compare_expressions().

exitCompare_expressions(GorScriptParser.Compare_expressionsContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.compare_expressions().

exitCreate_statement(GorScriptParser.Create_statementContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.create_statement().

exitCreate_statement(GorScriptParser.Create_statementContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.create_statement().

exitDef_macro(GorScriptParser.Def_macroContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.def_macro().

exitDef_macro(GorScriptParser.Def_macroContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.def_macro().

exitEveryRule(ParserRuleContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

exitExpression(GorScriptParser.ExpressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.expression().

exitExpression(GorScriptParser.ExpressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.expression().

exitFactor(GorScriptParser.FactorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.factor().

exitFactor(GorScriptParser.FactorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.factor().

exitFilename(GorScriptParser.FilenameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.filename().

exitFilename(GorScriptParser.FilenameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.filename().

exitFunction_call(GorScriptParser.Function_callContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.function_call().

exitFunction_call(GorScriptParser.Function_callContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.function_call().

exitFunction_expr(GorScriptParser.Function_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.function_expr().

exitFunction_expr(GorScriptParser.Function_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.function_expr().

exitFunction_name(GorScriptParser.Function_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.function_name().

exitFunction_name(GorScriptParser.Function_nameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.function_name().

exitGeneric_command(GorScriptParser.Generic_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.generic_command().

exitGeneric_command(GorScriptParser.Generic_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.generic_command().

exitGor_expression(GorScriptParser.Gor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.gor_expression().

exitGor_expression(GorScriptParser.Gor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.gor_expression().

exitGornor_expression(GorScriptParser.Gornor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.gornor_expression().

exitGornor_expression(GorScriptParser.Gornor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.gornor_expression().

exitHide_command(GorScriptParser.Hide_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.hide_command().

exitHide_command(GorScriptParser.Hide_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.hide_command().

exitIf_expr(GorScriptParser.If_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.if_expr().

exitIf_expr(GorScriptParser.If_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.if_expr().

exitIn_expression(GorScriptParser.In_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.in_expression().

exitIn_expression(GorScriptParser.In_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.in_expression().

exitIndag_expression(GorScriptParser.Indag_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.indag_expression().

exitIndag_expression(GorScriptParser.Indag_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.indag_expression().

exitInput_source(GorScriptParser.Input_sourceContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.input_source().

exitInput_source(GorScriptParser.Input_sourceContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.input_source().

exitMacro_name(GorScriptParser.Macro_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.macro_name().

exitMacro_name(GorScriptParser.Macro_nameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.macro_name().

exitMacro_value(GorScriptParser.Macro_valueContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.macro_value().

exitMacro_value(GorScriptParser.Macro_valueContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.macro_value().

exitNested_query(GorScriptParser.Nested_queryContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.nested_query().

exitNested_query(GorScriptParser.Nested_queryContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.nested_query().

exitNor_expression(GorScriptParser.Nor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.nor_expression().

exitNor_expression(GorScriptParser.Nor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.nor_expression().

exitNot_rel_expr(GorScriptParser.Not_rel_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.not_rel_expr().

exitNot_rel_expr(GorScriptParser.Not_rel_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.not_rel_expr().

exitNumber(GorScriptParser.NumberContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.number().

exitNumber(GorScriptParser.NumberContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.number().

exitOption(GorScriptParser.OptionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.option().

exitOption(GorScriptParser.OptionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.option().

exitOption_value(GorScriptParser.Option_valueContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.option_value().

exitOption_value(GorScriptParser.Option_valueContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.option_value().

exitOptional_power_factor(GorScriptParser.Optional_power_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.optional_power_factor().

exitOptional_power_factor(GorScriptParser.Optional_power_factorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.optional_power_factor().

exitOptions_and_args(GorScriptParser.Options_and_argsContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.options_and_args().

exitOptions_and_args(GorScriptParser.Options_and_argsContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.options_and_args().

exitParen_expr(GorScriptParser.Paren_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.paren_expr().

exitParen_expr(GorScriptParser.Paren_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.paren_expr().

exitParen_rel_expr(GorScriptParser.Paren_rel_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.paren_rel_expr().

exitParen_rel_expr(GorScriptParser.Paren_rel_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.paren_rel_expr().

exitPgor_expression(GorScriptParser.Pgor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.pgor_expression().

exitPgor_expression(GorScriptParser.Pgor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.pgor_expression().

exitPipe_command(GorScriptParser.Pipe_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.pipe_command().

exitPipe_command(GorScriptParser.Pipe_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.pipe_command().

exitPower_factor(GorScriptParser.Power_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.power_factor().

exitPower_factor(GorScriptParser.Power_factorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.power_factor().

exitPredicate(GorScriptParser.PredicateContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.predicate().

exitPredicate(GorScriptParser.PredicateContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.predicate().

exitPredicate_factor(GorScriptParser.Predicate_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.predicate_factor().

exitPredicate_factor(GorScriptParser.Predicate_factorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.predicate_factor().

exitQuery_expression(GorScriptParser.Query_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.query_expression().

exitQuery_expression(GorScriptParser.Query_expressionContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.query_expression().

exitRel_expr(GorScriptParser.Rel_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.rel_expr().

exitRel_expr(GorScriptParser.Rel_exprContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.rel_expr().

exitRel_term(GorScriptParser.Rel_termContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.rel_term().

exitRel_term(GorScriptParser.Rel_termContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.rel_term().

exitRename_command(GorScriptParser.Rename_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.rename_command().

exitRename_command(GorScriptParser.Rename_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.rename_command().

exitReplace_command(GorScriptParser.Replace_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.replace_command().

exitReplace_command(GorScriptParser.Replace_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.replace_command().

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Calc_commandContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Calc_expression_listContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Calc_expressionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_listContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_nameContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_numberContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_rangeContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_refContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_rename_ruleContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Column_wildcardContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Create_statementContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Def_macroContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.FactorContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.FilenameContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Function_exprContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Function_nameContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Generic_commandContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Gornor_expressionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Hide_commandContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.In_expressionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Input_sourceContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Macro_nameContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Macro_valueContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Nested_queryContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Not_rel_exprContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.NumberContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Option_valueContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Optional_power_factorContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.OptionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Paren_exprContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Paren_rel_exprContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Power_factorContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Predicate_factorContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.PredicateContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Query_expressionContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Rel_exprContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Rel_termContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Rename_commandContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Replace_commandContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Select_commandContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Signed_factorContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.String_literal_listContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.String_literalContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.TermContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.ValueContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.VariableContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relation_nameContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relationContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.Where_commandContext

exitRule(ParseTreeListener) - Method in class org.gorpipe.gor.GorScriptParser.XfactorContext

exitScript(GorScriptParser.ScriptContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.script().

exitScript(GorScriptParser.ScriptContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.script().

exitSelect_command(GorScriptParser.Select_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.select_command().

exitSelect_command(GorScriptParser.Select_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.select_command().

exitSigned_factor(GorScriptParser.Signed_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.signed_factor().

exitSigned_factor(GorScriptParser.Signed_factorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.signed_factor().

exitString_literal(GorScriptParser.String_literalContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.string_literal().

exitString_literal(GorScriptParser.String_literalContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.string_literal().

exitString_literal_list(GorScriptParser.String_literal_listContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.string_literal_list().

exitString_literal_list(GorScriptParser.String_literal_listContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.string_literal_list().

exitTerm(GorScriptParser.TermContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.term().

exitTerm(GorScriptParser.TermContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.term().

exitValue(GorScriptParser.ValueContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.value().

exitValue(GorScriptParser.ValueContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.value().

exitVariable(GorScriptParser.VariableContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.variable().

exitVariable(GorScriptParser.VariableContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.variable().

exitVirtual_relation(GorScriptParser.Virtual_relationContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.virtual_relation().

exitVirtual_relation(GorScriptParser.Virtual_relationContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.virtual_relation().

exitVirtual_relation_name(GorScriptParser.Virtual_relation_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.virtual_relation_name().

exitVirtual_relation_name(GorScriptParser.Virtual_relation_nameContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.virtual_relation_name().

exitWhere_command(GorScriptParser.Where_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.where_command().

exitWhere_command(GorScriptParser.Where_commandContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.where_command().

exitXfactor(GorScriptParser.XfactorContext) - Method in class org.gorpipe.gor.GorScriptBaseListener

Exit a parse tree produced by GorScriptParser.xfactor().

exitXfactor(GorScriptParser.XfactorContext) - Method in interface org.gorpipe.gor.GorScriptListener

Exit a parse tree produced by GorScriptParser.xfactor().

expression() - Method in class org.gorpipe.gor.GorScriptParser.Calc_expression_listContext

expression() - Method in class org.gorpipe.gor.GorScriptParser.Calc_expressionContext

expression() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

expression() - Method in class org.gorpipe.gor.GorScriptParser

expression() - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

expression() - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

expression() - Method in class org.gorpipe.gor.GorScriptParser.In_expressionContext

expression() - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

expression() - Method in class org.gorpipe.gor.GorScriptParser.Paren_exprContext

expression(int) - Method in class org.gorpipe.gor.GorScriptParser.Calc_expression_listContext

expression(int) - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

expression(int) - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

expression(int) - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

expression(int) - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

ExpressionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.ExpressionContext

extractValue(String) - Method in enum org.gorpipe.querydialogs.factory.ArgumentContent.Format

Extract value from content string.

extractValues - Variable in class org.gorpipe.querydialogs.GridArgument

Defines whether grid values or grid name should be used in selector.

F

factor() - Method in class org.gorpipe.gor.GorScriptParser

factor() - Method in class org.gorpipe.gor.GorScriptParser.Optional_power_factorContext

factor() - Method in class org.gorpipe.gor.GorScriptParser.Power_factorContext

factor(int) - Method in class org.gorpipe.gor.GorScriptParser.Power_factorContext

FactorContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.FactorContext

fd3 - Static variable in class gorsat.process.GorJavaUtilities

FILE - Static variable in class org.gorpipe.querydialogs.ArgumentType

FILE_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

FileArgument - Class in org.gorpipe.querydialogs.argument

Represents an argument that expects a file path.

FileArgument(FileArgument) - Constructor for class org.gorpipe.querydialogs.argument.FileArgument

Constructor that copies the input file argument.

FileArgument(ArgumentDescription, Boolean, Object, Boolean, Integer, String) - Constructor for class org.gorpipe.querydialogs.argument.FileArgument

Constructor.

FileArgumentBuilder - Class in org.gorpipe.querydialogs.factory.builder

Responsible for building file arguments.

FileArgumentBuilder(FileReader) - Constructor for class org.gorpipe.querydialogs.factory.builder.FileArgumentBuilder

filename() - Method in class org.gorpipe.gor.GorScriptParser

filename() - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

filename() - Method in class org.gorpipe.gor.GorScriptParser.Input_sourceContext

FILENAME - Static variable in class org.gorpipe.gor.GorScriptLexer

FILENAME - Static variable in class org.gorpipe.gor.GorScriptParser

FILENAME() - Method in class org.gorpipe.gor.GorScriptParser.FilenameContext

FilenameContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.FilenameContext

filterCmd(String[], String) - Static method in class gorsat.process.ProcessRowSource

FILTERED_PN_LISTS - Static variable in class org.gorpipe.querydialogs.ArgumentType

FILTERED_PN_LISTS_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

FilteringColumnDefinition - Interface in org.gorpipe.querydialogs

Interface for filtering column definition.

findTemplateSource(String) - Method in class org.gorpipe.querydialogs.templating.NetworkTemplateLoader

finish() - Method in class gorsat.external.plink.PlinkAdjustAdaptor

finish() - Method in class gorsat.external.plink.PlinkProcessAdaptor

finish() - Method in class gorsat.IOTestAnalyser

finish() - Method in class gorsat.parquet.GorParquetFileOut

fireContentsChanged(int, int) - Method in class org.gorpipe.querydialogs.AbstractListBean

firePropertyChange(PropertyChangeEvent) - Method in class org.gorpipe.querydialogs.BasicBean

Reports a bound property change.

firePropertyChange(String, boolean, boolean) - Method in class org.gorpipe.querydialogs.BasicBean

Support for reporting bound property changes for boolean properties.

firePropertyChange(String, byte, byte) - Method in class org.gorpipe.querydialogs.BasicBean

Reports a bound property change.

firePropertyChange(String, char, char) - Method in class org.gorpipe.querydialogs.BasicBean

Reports a bound property change.

firePropertyChange(String, double, double) - Method in class org.gorpipe.querydialogs.BasicBean

Reports a bound property change.

firePropertyChange(String, float, float) - Method in class org.gorpipe.querydialogs.BasicBean

Reports a bound property change.

firePropertyChange(String, int, int) - Method in class org.gorpipe.querydialogs.BasicBean

Support for reporting bound property changes for integer properties.

firePropertyChange(String, long, long) - Method in class org.gorpipe.querydialogs.BasicBean

Reports a bound property change.

firePropertyChange(String, short, short) - Method in class org.gorpipe.querydialogs.BasicBean

Reports a bound property change.

firePropertyChange(String, Object, Object) - Method in class org.gorpipe.querydialogs.BasicBean

Support for reporting bound property changes for Object properties.

FIRST_POSSIBLE_CHROMOSOME_VALUE - Static variable in class org.gorpipe.gor.GorConstants

forEachRemaining(Consumer<? super Row>) - Method in class gorsat.BatchedPipeStepIteratorAdaptor

format - Variable in class org.gorpipe.querydialogs.factory.ArgumentContent

The format.

format(Object, Object...) - Method in class org.gorpipe.querydialogs.util.ValueFormatter

formatForStore(String) - Method in enum org.gorpipe.querydialogs.factory.ArgumentContent.Format

Format value.

FRAMEBUFFERSIZE_KEY - Static variable in interface gorsat.BatchedReadSourceConfig

FreemarkerQueryUtilities - Class in gorsat

Helper functions to parse and create reports with the freemarker parsing engine.

FreemarkerReportBuilder - Class in gorsat.process

Report builder class for building freemarker based reports via yml files.

FreemarkerReportBuilder(GorSession) - Constructor for class gorsat.process.FreemarkerReportBuilder

FULL_PACKING - org.gorpipe.gor.manager.BucketManager.BucketPackLevel

function_call() - Method in class org.gorpipe.gor.GorScriptParser

function_call() - Method in class org.gorpipe.gor.GorScriptParser.Function_exprContext

function_call() - Method in class org.gorpipe.gor.GorScriptParser.PredicateContext

Function_callContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Function_callContext

function_expr() - Method in class org.gorpipe.gor.GorScriptParser

function_expr() - Method in class org.gorpipe.gor.GorScriptParser.XfactorContext

Function_exprContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Function_exprContext

function_name() - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

function_name() - Method in class org.gorpipe.gor.GorScriptParser

Function_nameContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Function_nameContext

G

GavaLogLikelihood - Class in org.gorpipe.gor.gava

Log-likelihood ratio calculator for variant association.

GavaLogLikelihood() - Constructor for class org.gorpipe.gor.gava.GavaLogLikelihood

GBasicRulesCalculator - Class in org.gorpipe.gor.haplotype

Checks the correctness of phase of haplotypes/genotypes using basic rules.

GBasicRulesCalculator() - Constructor for class org.gorpipe.gor.haplotype.GBasicRulesCalculator

GChiSquared2by2 - Class in org.gorpipe.gor.util

Chi-squared for 2-by-2 contingency tables.

GE - Static variable in class org.gorpipe.gor.GorScriptLexer

GE - Static variable in class org.gorpipe.gor.GorScriptParser

GE() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

GENE_LIST - Static variable in class org.gorpipe.querydialogs.ArgumentType

GENE_LIST_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

GENERIC - org.gorpipe.querydialogs.DialogType

A generic dialog

generic_command() - Method in class org.gorpipe.gor.GorScriptParser

generic_command() - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

Generic_commandContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Generic_commandContext

GenericGorRunner - Class in gorsat.process

This class handles the most basic gor pipe execution.

GenericGorRunner() - Constructor for class gorsat.process.GenericGorRunner

GenericRunnerFactory - Class in gorsat.process

Factory method for creating an instance of the GenericGorRunner class.

GenericRunnerFactory() - Constructor for class gorsat.process.GenericRunnerFactory

GenericSessionFactory - Class in gorsat.process

Factory class for creating default/generic gor sessions.

GenericSessionFactory() - Constructor for class gorsat.process.GenericSessionFactory

GenericSessionFactory(String, String) - Constructor for class gorsat.process.GenericSessionFactory

genomic_control_correct_p(double, double) - Static method in class gorsat.process.StatisticalAdjustment

genomic_control_correct_z(double, double) - Static method in class gorsat.process.StatisticalAdjustment

The genomic control corrected chi-2 statistic is computed by dividing the initial chi-2 statistic by lambda (the genomic inflation estimate).

GenotypeLookupUtilities - Class in gorsat.process

Genotype lookup utilities for generating vcf files from horizontal got gt data

GenotypeLookupUtilities() - Constructor for class gorsat.process.GenotypeLookupUtilities

get(int) - Method in class gorsat.RowBuffer

get(int) - Static method in class org.gorpipe.gor.util.GLogGamma

Returns log(i!).

get(int, int) - Method in class gorsat.process.GorJavaUtilities.PRPRPRValue

get(int, int) - Method in class gorsat.process.GorJavaUtilities.PRPRValue

get(int, int) - Method in class gorsat.process.GorJavaUtilities.VCFValue

get_pAB() - Method in class gorsat.gtgen.GTGen

get_pBB() - Method in class gorsat.gtgen.GTGen

getAF() - Method in class gorsat.gtgen.GTGen

getAliasName() - Method in class gorsat.process.GorJavaUtilities.CmdParams

getAllowedValues(Map<String, ? extends Object>) - Static method in class org.gorpipe.querydialogs.factory.ArgumentBuilder

getAn() - Method in class gorsat.gtgen.GTGen

getArgument(String) - Method in class org.gorpipe.querydialogs.Dialog

getArgumentDescription(Map<String, ? extends Object>, String) - Method in class org.gorpipe.querydialogs.factory.ArgumentBuilder

getArgumentMap() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Get argument map.

getATN() - Method in class org.gorpipe.gor.GorScriptLexer

getATN() - Method in class org.gorpipe.gor.GorScriptParser

getAttribute(String) - Method in class org.gorpipe.querydialogs.Dialog

getAvgBasesPerMilliSecond() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getAvgBasesPerMilliSecond() - Method in class gorsat.BatchedReadSource

getAvgBatchSize() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getAvgBatchSize() - Method in class gorsat.BatchedReadSource

getAvgRowsPerMilliSecond() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getAvgRowsPerMilliSecond() - Method in class gorsat.BatchedReadSource

getAvgSeekTimeMilliSecond() - Method in class gorsat.BatchedReadSource

getBaseChartColumns() - Method in class org.gorpipe.querydialogs.Dialog

getBaseChartDF() - Method in class org.gorpipe.querydialogs.Dialog

getBaseChartExec() - Method in class org.gorpipe.querydialogs.Dialog

getBaseChartScript() - Method in class org.gorpipe.querydialogs.Dialog

getBaseQuery() - Method in class org.gorpipe.querydialogs.Dialog

getBatchOfferTimeout() - Method in interface gorsat.BatchedReadSourceConfig

getBucketSize() - Method in class org.gorpipe.gor.manager.BucketManager

getBucketSize() - Method in class org.gorpipe.gor.manager.TableManager

getBufferFillTime() - Method in interface gorsat.BatchedReadSourceConfig

getBufferFlushTimout() - Method in interface gorsat.BatchedReadSourceConfig

getCache(String) - Static method in class gorsat.process.GorSessionCacheManager

getCapacity() - Method in class gorsat.RowBuffer

getChannelNames() - Method in class org.gorpipe.gor.GorScriptLexer

getChart() - Method in class org.gorpipe.querydialogs.Dialog

getChiSqValue(double) - Static method in class org.gorpipe.gor.util.GChiSquared2by2

Get the chi-squared value corresponding to a p-value (assuming 1 degree of freedom).

getCmdPath() - Method in class gorsat.process.GorJavaUtilities.CmdParams

getColumnGroups() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

getCommand() - Method in class gorsat.process.GorJavaUtilities.CmdParams

getComparator() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getConnectionRetries() - Method in interface gorsat.BatchedReadSourceConfig

getConnectionRetryExponent() - Method in interface gorsat.BatchedReadSourceConfig

getConnectionRetryTime() - Method in interface gorsat.BatchedReadSourceConfig

getCurrentBatchLoc() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getCurrentBatchLoc() - Method in class gorsat.BatchedReadSource

getCurrentBatchRow(int) - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getCurrentBatchRow(int) - Method in class gorsat.BatchedReadSource

getCurrentBatchSize() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getCurrentBatchSize() - Method in class gorsat.BatchedReadSource

getDbIteratorSource(String, boolean, String, boolean) - Static method in class gorsat.process.GorJavaUtilities

getDefaultBucketDir() - Method in class org.gorpipe.gor.manager.BucketManager

getDefaultValue() - Method in class org.gorpipe.querydialogs.Argument

getDescription() - Method in class org.gorpipe.querydialogs.Argument

Get argument description.

getDescription() - Method in class org.gorpipe.querydialogs.Dialog

getDescription() - Method in interface org.gorpipe.querydialogs.FilteringColumnDefinition

Get the description of the column (one sentence).

getDescriptionPanelWithHyperlink(JComponent) - Method in interface org.gorpipe.querydialogs.FilteringColumnDefinition

The description is displayed in a panel.

getDialogCategory() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Get the dialog category the dialog belongs to.

getDialogsFilePath() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

getDisplayName() - Method in class org.gorpipe.querydialogs.Argument

Get the name to display for argument.

getDisplayName() - Method in class org.gorpipe.querydialogs.ArgumentDescription

Get the display name.

getDisplayWidth() - Method in class org.gorpipe.querydialogs.Argument

Get the display width for argument.

getDisplayWidth(Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.ArgumentBuilder

getEffectiveMinBucketSize() - Method in class org.gorpipe.gor.manager.BucketManager

Get effective min bucket size.

getElementAt(int) - Method in class org.gorpipe.querydialogs.Argument

getElementAt(int) - Method in class org.gorpipe.querydialogs.Dialog

getErrorMessage() - Method in class org.gorpipe.querydialogs.Dialog

getEx() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getEx() - Method in class gorsat.BatchedReadSource

getException() - Method in class org.gorpipe.gor.GorScriptAnalyzer

getExtraTasks() - Method in class org.gorpipe.gor.GorScriptAnalyzer

getFadeInImageColor() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Get the dialog fade in image color.

getFadeInImageColor() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialogDisplayParams

Get the fade in image color.

getFileFilterComponents() - Method in class org.gorpipe.querydialogs.argument.FileArgument

Get components for file filters (for example ['*.txt', '*.gor']).

getFilePath() - Method in class gorsat.process.NordIteratorEntry

getFileReader() - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

Get the FileResolver for this factory

getFileResolver() - Method in class org.gorpipe.querydialogs.Dialog

getFilterString() - Method in class org.gorpipe.querydialogs.factory.Perspective

getFiniteChiSqValue(double, int, int, int, int) - Static method in class org.gorpipe.gor.util.GChiSquared2by2

Get the chi-squared value corresponding to a p-value (assuming 1 degree of freedom), but if the p-value is zero compute the chi-squared value directly from the table.

getFormat() - Method in class org.gorpipe.querydialogs.argument.StringArgument

Get the format for the string argument.

getFormatByValueFormat(String) - Static method in enum org.gorpipe.querydialogs.factory.ArgumentContent.Format

Get format by value format key.

getFormattedValue() - Method in class org.gorpipe.querydialogs.argument.StringArgument

getFormatter() - Method in class org.gorpipe.querydialogs.argument.StringArgument

getFrameBufferSize() - Method in interface gorsat.BatchedReadSourceConfig

getGitSha() - Method in class org.gorpipe.querydialogs.Dialog

getGorLogisticRegressionObject(int, int) - Static method in class gorsat.Regression.LogisticRegression

getGrammarFileName() - Method in class org.gorpipe.gor.GorScriptLexer

getGrammarFileName() - Method in class org.gorpipe.gor.GorScriptParser

getGroupName() - Method in class org.gorpipe.querydialogs.factory.Perspective

getHeader() - Method in class gorsat.external.plink.GORLine

getHeader() - Method in class gorsat.external.plink.PlinkAdjustAdaptor

getHeader() - Method in class gorsat.IOTestAnalyser

getHeader() - Method in class gorsat.process.BaseStreamIterator

getHeader() - Method in class gorsat.process.GorStreamIterator

getHeader() - Method in class gorsat.process.NorStreamIterator

getHeader() - Method in class gorsat.process.NorToGorPipeStep

getHeader() - Method in class org.gorpipe.gor.function.GorRowQueryFunction

getHeader(String) - Method in class org.gorpipe.gor.function.GorRowQueryFunction

getHelpDefinition() - Method in class org.gorpipe.querydialogs.argument.StringArgument

Get help definition for argument.

getHelpLink() - Method in class org.gorpipe.querydialogs.Dialog

getHtmlTemplate() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Deprecated.

Should define an html template for perspectives instead

getIgnoreCase(Collection<String>, String) - Static method in class gorsat.process.GorJavaUtilities

getImageColor() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Get the dialog image color.

getImageColor() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialogDisplayParams

Get the image color.

getIncompatibleTypes() - Static method in interface gorsat.parser.TypedCalcLambda

getIndex() - Method in class gorsat.RowBuffer

getInfo() - Method in class org.gorpipe.gor.RequestStats

getInitialColumns() - Method in class org.gorpipe.querydialogs.factory.Perspective

getInitialColumns() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Deprecated.

Should define initial columns for perspectives instead

getInputFileFirstReport() - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

Get the name of the first report in the input file.

getInterpolatedChart() - Method in class org.gorpipe.querydialogs.Dialog

getInterpolatedQuery() - Method in class org.gorpipe.querydialogs.Dialog

getInvSqrtLambda_p(double[]) - Static method in class gorsat.process.StatisticalAdjustment

Returns 1 / sqrt(lambda) where lambda is the genomic inflation estimate.

getLastModified(Object) - Method in class org.gorpipe.querydialogs.templating.NetworkTemplateLoader

getListDescription() - Method in class org.gorpipe.querydialogs.Dialog

getListsColumnHeaders() - Method in class org.gorpipe.querydialogs.util.SubjectLists

Get the lists column headers.

getListsContent() - Method in class org.gorpipe.querydialogs.util.SubjectLists

Get lists content.

getListsNamesExcludeDefaultLists() - Method in class org.gorpipe.querydialogs.util.SubjectLists

Get comma separated lists names excluding default lists.

getListsNamesJoined() - Method in class org.gorpipe.querydialogs.util.SubjectLists

Get the names of lists in a comma separated string.

getListsSubjectContent() - Method in class org.gorpipe.querydialogs.util.SubjectLists

Returns content subject values.

getLockTimeout() - Method in class org.gorpipe.gor.manager.BucketManager

getLockTimeout() - Method in class org.gorpipe.gor.manager.TableManager

getLockType() - Method in class org.gorpipe.gor.manager.TableManager

getLogInterval() - Method in interface gorsat.BatchedReadSourceConfig

getMax() - Method in class org.gorpipe.querydialogs.argument.NumberArgument

getMaxGorlines() - Method in interface gorsat.BatchedReadSourceConfig

getMaxTextFieldMinWidth() - Method in class org.gorpipe.querydialogs.argument.NumberArgument

Get the minium width of a text field for the argument maximum value.

getMin() - Method in class org.gorpipe.querydialogs.argument.NumberArgument

getMinBucketSize() - Method in class org.gorpipe.gor.manager.BucketManager

getMinTextFieldMinWidth() - Method in class org.gorpipe.querydialogs.argument.NumberArgument

Get the minium width of a text field for the argument minimum value.

getModeNames() - Method in class org.gorpipe.gor.GorScriptLexer

getName() - Method in class org.gorpipe.querydialogs.Argument

Get argument name.

getName() - Method in class org.gorpipe.querydialogs.Dialog

getName() - Method in class org.gorpipe.querydialogs.factory.Perspective

getNotImplemented() - Static method in interface gorsat.parser.TypedCalcLambda

getNumberOfCombinations(int, int) - Static method in class org.gorpipe.gor.gava.CombinationIterator

Computes the number of combinations.

getNumberOfSamples() - Method in class gorsat.gtgen.GTGen

getNumberValue() - Method in class org.gorpipe.querydialogs.argument.NumberArgument

getOperator() - Method in class org.gorpipe.querydialogs.Argument

getOperators() - Method in class org.gorpipe.querydialogs.Argument

getPackageVersion() - Method in class org.gorpipe.querydialogs.Dialog

getPermutation() - Method in class org.gorpipe.gor.gava.CombinationIterator

getPersistingValueObject() - Method in class org.gorpipe.querydialogs.argument.StringArgument

Get the persisting value.

getPerspectives() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

getPerspectivesCopies() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Get copies of perspectives.

getPhenotype(String, BufferedReader) - Static method in class gorsat.process.GorJavaUtilities

getPriorAf() - Method in class gorsat.gtgen.GTGen

getPriorAn() - Method in class gorsat.gtgen.GTGen

getPropertyChangeListeners() - Method in class org.gorpipe.querydialogs.BasicBean

Returns an array of all the property change listeners registered on this component.

getPropertyChangeListeners(String) - Method in class org.gorpipe.querydialogs.BasicBean

Returns an array of all the listeners which have been associated with the named property.

getPValue(double) - Static method in class org.gorpipe.gor.util.GChiSquared2by2

Get the p-value from a chi-squared value for a 2-by-2 table.

getQuery() - Method in class org.gorpipe.querydialogs.Dialog

getQueryEval() - Method in class org.gorpipe.querydialogs.Dialog

getQueryEval() - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

getRandomColor() - Static method in class org.gorpipe.querydialogs.factory.PerspectiveDialogDisplayParams

Get random color from available colors in map.

getReader(Object, String) - Method in class org.gorpipe.querydialogs.templating.NetworkTemplateLoader

getReportCommands() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Get the report command list.

getRow() - Method in class gorsat.external.plink.AdjustedGORLineIterator

getRowArray() - Method in class gorsat.RowBuffer

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Calc_commandContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Calc_expression_listContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Calc_expressionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Column_listContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Column_nameContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Column_numberContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Column_rangeContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Column_refContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Column_rename_ruleContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Column_selectionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Column_wildcardContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Create_statementContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Def_macroContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.FactorContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.FilenameContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Function_exprContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Function_nameContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Generic_commandContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Gornor_expressionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Hide_commandContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.In_expressionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Input_sourceContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Macro_nameContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Macro_valueContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Nested_queryContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Not_rel_exprContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.NumberContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Option_valueContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Optional_power_factorContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.OptionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Paren_exprContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Paren_rel_exprContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Power_factorContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Predicate_factorContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.PredicateContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Query_expressionContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Rel_exprContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Rel_termContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Rename_commandContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Replace_commandContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Select_commandContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Signed_factorContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.String_literal_listContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.String_literalContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.TermContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.ValueContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.VariableContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relation_nameContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relationContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.Where_commandContext

getRuleIndex() - Method in class org.gorpipe.gor.GorScriptParser.XfactorContext

getRuleNames() - Method in class org.gorpipe.gor.GorScriptLexer

getRuleNames() - Method in class org.gorpipe.gor.GorScriptParser

getSecurityContext() - Method in class org.gorpipe.gor.manager.TableManager

getSerializedATN() - Method in class org.gorpipe.gor.GorScriptLexer

getSerializedATN() - Method in class org.gorpipe.gor.GorScriptParser

getShortDescription() - Method in interface org.gorpipe.querydialogs.FilteringColumnDefinition

Get the short description of column (few words).

getShortName() - Method in class org.gorpipe.querydialogs.Dialog

getSigmoidFunction() - Static method in class gorsat.Regression.SigmoidFunction

getSize() - Method in class org.gorpipe.querydialogs.Argument

getSize() - Method in class org.gorpipe.querydialogs.Dialog

getStatsCollector() - Method in class org.gorpipe.gor.RequestStats

getStream() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getStream(boolean) - Method in class gorsat.BatchedPipeStepIteratorAdaptor

getTag() - Method in class gorsat.process.NordIteratorEntry

getTasks() - Method in class org.gorpipe.gor.GorScriptAnalyzer

getTasksByLevel() - Method in class org.gorpipe.gor.GorScriptAnalyzer

getTasksByName() - Method in class org.gorpipe.gor.GorScriptAnalyzer

getTokenNames() - Method in class org.gorpipe.gor.GorScriptLexer

Deprecated.

getTokenNames() - Method in class org.gorpipe.gor.GorScriptParser

Deprecated.

getTooltip() - Method in class org.gorpipe.querydialogs.Argument

Get argument tooltip.

getType() - Method in class gorsat.parser.CalcLambdaBoolean

getType() - Method in class gorsat.parser.CalcLambdaDouble

getType() - Method in class gorsat.parser.CalcLambdaDoubleConstant

getType() - Method in class gorsat.parser.CalcLambdaInteger

getType() - Method in class gorsat.parser.CalcLambdaIntegerConstant

getType() - Method in class gorsat.parser.CalcLambdaLong

getType() - Method in class gorsat.parser.CalcLambdaLongConstant

getType() - Method in class gorsat.parser.CalcLambdaString

getType() - Method in class gorsat.parser.CalcLambdaStringConstant

getType() - Method in class gorsat.parser.CalcLambdaVariable

getType() - Method in interface gorsat.parser.TypedCalcLambda

getType() - Method in class gorsat.process.GorJavaUtilities.CmdParams

getType() - Method in class org.gorpipe.querydialogs.Argument

getType() - Method in class org.gorpipe.querydialogs.Dialog

getValue() - Method in class gorsat.parser.CalcLambdaDoubleConstant

getValue() - Method in class gorsat.parser.CalcLambdaIntegerConstant

getValue() - Method in class gorsat.parser.CalcLambdaLongConstant

getValue() - Method in class org.gorpipe.querydialogs.Argument

getValuesHeader() - Method in class org.gorpipe.querydialogs.Argument

Get the values header.

getValuesPath() - Method in class org.gorpipe.querydialogs.Argument

getValuesPath(Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.ArgumentBuilder

getValueTextFieldMinWidth() - Method in class org.gorpipe.querydialogs.argument.NumberArgument

The minium width of a text field for the argument value.

getVersion() - Method in class org.gorpipe.querydialogs.Dialog

getViewString(Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.Perspective

Processes this perspectives view template with the given data.

getViewTemplate() - Method in class org.gorpipe.querydialogs.factory.Perspective

getViewTemplateColumns() - Method in class org.gorpipe.querydialogs.factory.Perspective

getViewType() - Method in class org.gorpipe.querydialogs.factory.Perspective

getVocabulary() - Method in class org.gorpipe.gor.GorScriptLexer

getVocabulary() - Method in class org.gorpipe.gor.GorScriptParser

getWriteSupport(Configuration) - Method in class gorsat.parquet.GorParquetWriter.GorParquetBuilder

GFisherExact2by2 - Class in org.gorpipe.gor.util

Fisher's exact test for 2-by-2 tables.

gitSHA - Variable in class org.gorpipe.querydialogs.Dialog

glCcToGp(int, char) - Static method in class gorsat.gtgen.GPParser

GLOBAL_GROUP - Static variable in class org.gorpipe.querydialogs.factory.Perspective

The group name assigned to perspectives that don't define their own group names.

GLogGamma - Class in org.gorpipe.gor.util

Compute the log of the Gamma-function for integer values, i.e., compute log(n!) for n = 0,1,2,...

GLogGamma() - Constructor for class org.gorpipe.gor.util.GLogGamma

glToGp(CharSequence, char) - Static method in class gorsat.gtgen.GPParser

GOR - Static variable in class org.gorpipe.gor.GorScriptLexer

GOR - Static variable in class org.gorpipe.gor.GorScriptParser

GOR() - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

gor_expression() - Method in class org.gorpipe.gor.GorScriptParser

gor_expression() - Method in class org.gorpipe.gor.GorScriptParser.Gornor_expressionContext

Gor_expressionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

GOR_GRID - Static variable in class org.gorpipe.querydialogs.ArgumentType

GOR_GRID_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

For selection from a gor grid (based on class GorViewer).

GorConstants - Class in org.gorpipe.gor

GorJavaUtilities - Class in gorsat.process

Created by sigmar on 21/12/15.

GorJavaUtilities() - Constructor for class gorsat.process.GorJavaUtilities

GorJavaUtilities.CmdParams - Class in gorsat.process

GorJavaUtilities.PhenoInfo - Class in gorsat.process

GorJavaUtilities.Phenotypes - Enum in gorsat.process

GorJavaUtilities.PRPRPRValue - Class in gorsat.process

GorJavaUtilities.PRPRValue - Class in gorsat.process

GorJavaUtilities.VCFValue - Class in gorsat.process

GORLine - Class in gorsat.external.plink

This class merges gor lines from multiple BufferedReaders.

gornor_expression() - Method in class org.gorpipe.gor.GorScriptParser

gornor_expression() - Method in class org.gorpipe.gor.GorScriptParser.Nested_queryContext

gornor_expression() - Method in class org.gorpipe.gor.GorScriptParser.Query_expressionContext

Gornor_expressionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Gornor_expressionContext

gorOnly - Variable in class org.gorpipe.querydialogs.GridArgument

Defines if only gor grids should be selected.

GorParquetFileOut - Class in gorsat.parquet

GorParquetFileOut(String, String, boolean) - Constructor for class gorsat.parquet.GorParquetFileOut

GorParquetWriter - Class in gorsat.parquet

Writes parquet file from a stream of gor/nor rows

GorParquetWriter(Path, WriteSupport<Row>, CompressionCodecName, int, int) - Constructor for class gorsat.parquet.GorParquetWriter

GorParquetWriter.GorParquetBuilder - Class in gorsat.parquet

GorParquetWriteSupport - Class in gorsat.parquet

Translates a gor/nor row to corresponding format in a parquet file

GorParquetWriteSupport() - Constructor for class gorsat.parquet.GorParquetWriteSupport

GorParsingError - Class in org.gorpipe.gor

GorParsingError(int, int, String) - Constructor for class org.gorpipe.gor.GorParsingError

GorParsingError(GorParsingException) - Constructor for class org.gorpipe.gor.GorParsingError

GorRowFilterFunction<T extends org.gorpipe.gor.model.Row> - Class in org.gorpipe.gor.function

GorRowFilterFunction(String, String[], String[]) - Constructor for class org.gorpipe.gor.function.GorRowFilterFunction

GorRowInferFunction - Class in org.gorpipe.gor.function

For map-reduce type inferance, such as in SparkSQL which needs a schema The gor type syntax, I for Int, D for Double and S for String Two rows with types I and S are reduced to type S etc.

GorRowInferFunction() - Constructor for class org.gorpipe.gor.function.GorRowInferFunction

GorRowMapFunction - Class in org.gorpipe.gor.function

GorRowMapFunction(String, String[], String[]) - Constructor for class org.gorpipe.gor.function.GorRowMapFunction

GorRowQueryFunction - Class in org.gorpipe.gor.function

GorRowQueryFunction(String) - Constructor for class org.gorpipe.gor.function.GorRowQueryFunction

GorRowQueryFunction(String, String) - Constructor for class org.gorpipe.gor.function.GorRowQueryFunction

gorsat - package gorsat

gorsat.external.plink - package gorsat.external.plink

gorsat.gtgen - package gorsat.gtgen

gorsat.parquet - package gorsat.parquet

gorsat.parser - package gorsat.parser

gorsat.process - package gorsat.process

gorsat.Regression - package gorsat.Regression

GorScriptAnalyzer - Class in org.gorpipe.gor

GorScriptAnalyzer(String) - Constructor for class org.gorpipe.gor.GorScriptAnalyzer

GorScriptBaseListener - Class in org.gorpipe.gor

This class provides an empty implementation of GorScriptListener, which can be extended to create a listener which only needs to handle a subset of the available methods.

GorScriptBaseListener() - Constructor for class org.gorpipe.gor.GorScriptBaseListener

GorScriptBaseVisitor<T> - Class in org.gorpipe.gor

This class provides an empty implementation of GorScriptVisitor, which can be extended to create a visitor which only needs to handle a subset of the available methods.

GorScriptBaseVisitor() - Constructor for class org.gorpipe.gor.GorScriptBaseVisitor

GorScriptLexer - Class in org.gorpipe.gor

GorScriptLexer(CharStream) - Constructor for class org.gorpipe.gor.GorScriptLexer

GorScriptListener - Interface in org.gorpipe.gor

This interface defines a complete listener for a parse tree produced by GorScriptParser.

GorScriptParser - Class in org.gorpipe.gor

GorScriptParser(TokenStream) - Constructor for class org.gorpipe.gor.GorScriptParser

GorScriptParser.ArgumentContext - Class in org.gorpipe.gor

GorScriptParser.Calc_commandContext - Class in org.gorpipe.gor

GorScriptParser.Calc_expression_listContext - Class in org.gorpipe.gor

GorScriptParser.Calc_expressionContext - Class in org.gorpipe.gor

GorScriptParser.Column_listContext - Class in org.gorpipe.gor

GorScriptParser.Column_nameContext - Class in org.gorpipe.gor

GorScriptParser.Column_numberContext - Class in org.gorpipe.gor

GorScriptParser.Column_rangeContext - Class in org.gorpipe.gor

GorScriptParser.Column_refContext - Class in org.gorpipe.gor

GorScriptParser.Column_rename_ruleContext - Class in org.gorpipe.gor

GorScriptParser.Column_selectionContext - Class in org.gorpipe.gor

GorScriptParser.Column_wildcardContext - Class in org.gorpipe.gor

GorScriptParser.Compare_expressionsContext - Class in org.gorpipe.gor

GorScriptParser.Create_statementContext - Class in org.gorpipe.gor

GorScriptParser.Def_macroContext - Class in org.gorpipe.gor

GorScriptParser.ExpressionContext - Class in org.gorpipe.gor

GorScriptParser.FactorContext - Class in org.gorpipe.gor

GorScriptParser.FilenameContext - Class in org.gorpipe.gor

GorScriptParser.Function_callContext - Class in org.gorpipe.gor

GorScriptParser.Function_exprContext - Class in org.gorpipe.gor

GorScriptParser.Function_nameContext - Class in org.gorpipe.gor

GorScriptParser.Generic_commandContext - Class in org.gorpipe.gor

GorScriptParser.Gor_expressionContext - Class in org.gorpipe.gor

GorScriptParser.Gornor_expressionContext - Class in org.gorpipe.gor

GorScriptParser.Hide_commandContext - Class in org.gorpipe.gor

GorScriptParser.If_exprContext - Class in org.gorpipe.gor

GorScriptParser.In_expressionContext - Class in org.gorpipe.gor

GorScriptParser.Indag_expressionContext - Class in org.gorpipe.gor

GorScriptParser.Input_sourceContext - Class in org.gorpipe.gor

GorScriptParser.Macro_nameContext - Class in org.gorpipe.gor

GorScriptParser.Macro_valueContext - Class in org.gorpipe.gor

GorScriptParser.Nested_queryContext - Class in org.gorpipe.gor

GorScriptParser.Nor_expressionContext - Class in org.gorpipe.gor

GorScriptParser.Not_rel_exprContext - Class in org.gorpipe.gor

GorScriptParser.NumberContext - Class in org.gorpipe.gor

GorScriptParser.Option_valueContext - Class in org.gorpipe.gor

GorScriptParser.Optional_power_factorContext - Class in org.gorpipe.gor

GorScriptParser.OptionContext - Class in org.gorpipe.gor

GorScriptParser.Options_and_argsContext - Class in org.gorpipe.gor

GorScriptParser.Paren_exprContext - Class in org.gorpipe.gor

GorScriptParser.Paren_rel_exprContext - Class in org.gorpipe.gor

GorScriptParser.Pgor_expressionContext - Class in org.gorpipe.gor

GorScriptParser.Pipe_commandContext - Class in org.gorpipe.gor

GorScriptParser.Power_factorContext - Class in org.gorpipe.gor

GorScriptParser.Predicate_factorContext - Class in org.gorpipe.gor

GorScriptParser.PredicateContext - Class in org.gorpipe.gor

GorScriptParser.Query_expressionContext - Class in org.gorpipe.gor

GorScriptParser.Rel_exprContext - Class in org.gorpipe.gor

GorScriptParser.Rel_termContext - Class in org.gorpipe.gor

GorScriptParser.Rename_commandContext - Class in org.gorpipe.gor

GorScriptParser.Replace_commandContext - Class in org.gorpipe.gor

GorScriptParser.ScriptContext - Class in org.gorpipe.gor

GorScriptParser.Select_commandContext - Class in org.gorpipe.gor

GorScriptParser.Signed_factorContext - Class in org.gorpipe.gor

GorScriptParser.String_literal_listContext - Class in org.gorpipe.gor

GorScriptParser.String_literalContext - Class in org.gorpipe.gor

GorScriptParser.TermContext - Class in org.gorpipe.gor

GorScriptParser.ValueContext - Class in org.gorpipe.gor

GorScriptParser.VariableContext - Class in org.gorpipe.gor

GorScriptParser.Virtual_relation_nameContext - Class in org.gorpipe.gor

GorScriptParser.Virtual_relationContext - Class in org.gorpipe.gor

GorScriptParser.Where_commandContext - Class in org.gorpipe.gor

GorScriptParser.XfactorContext - Class in org.gorpipe.gor

GorScriptVisitor<T> - Interface in org.gorpipe.gor

This interface defines a complete generic visitor for a parse tree produced by GorScriptParser.

GorSessionCacheManager - Class in gorsat.process

Class that stores the session cache on a requestId key.

GorSessionFactory - Class in gorsat.process

GorSessionFactory() - Constructor for class gorsat.process.GorSessionFactory

GorStreamIterator - Class in gorsat.process

GorStreamIterator(Supplier<Stream<String>>, boolean) - Constructor for class gorsat.process.GorStreamIterator

GORZ_META - Static variable in class gorsat.process.GorJavaUtilities

GPParser - Class in gorsat.gtgen

Utility functions for parsing genotype probability triplets.

gracePeriodForDeletingBuckets - Variable in class org.gorpipe.gor.manager.BucketManager

gradient - Variable in class gorsat.Regression.LogisticRegression

gradMult - Variable in class gorsat.Regression.LogisticRegression

GRID - Static variable in class org.gorpipe.querydialogs.ArgumentType

GRID_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

For selection from a grid.

GridArgument - Class in org.gorpipe.querydialogs

Argument for selecting grids or values from grids.

GridArgument(StringArgument, List<RequiredColumn>, Boolean, Boolean, Boolean) - Constructor for class org.gorpipe.querydialogs.GridArgument

Constructor.

GridArgument(GridArgument) - Constructor for class org.gorpipe.querydialogs.GridArgument

Copy constructor.

GridArgumentBuilder - Class in org.gorpipe.querydialogs

Builder for grid argument.

GridArgumentBuilder(FileReader) - Constructor for class org.gorpipe.querydialogs.GridArgumentBuilder

GT - Static variable in class org.gorpipe.gor.GorScriptLexer

GT - Static variable in class org.gorpipe.gor.GorScriptParser

GT() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

GTGen - Class in gorsat.gtgen

A class for running simple joint variant calling.

GTGen(double, int) - Constructor for class gorsat.gtgen.GTGen

H

handleUnknownType(Object) - Method in class org.gorpipe.querydialogs.templating.DialogArgumentWrapper

hasArgument(String) - Method in class org.gorpipe.querydialogs.Dialog

hasColumnHelp() - Method in interface org.gorpipe.querydialogs.FilteringColumnDefinition

Check if help is defined for column.

hasCoverage(int) - Method in class gorsat.gtgen.GTGen

hasDeferredValues() - Method in class org.gorpipe.querydialogs.Argument

hasDeferredValues() - Method in class org.gorpipe.querydialogs.argument.QueryArgument

hasDescription() - Method in interface org.gorpipe.querydialogs.FilteringColumnDefinition

Check if the column definition has a description.

hasEmptyFormat() - Method in class org.gorpipe.querydialogs.util.ValueFormatter

Check if value formatter has empty format defined.

hashCode() - Method in class org.gorpipe.querydialogs.factory.ColumnGroup

hasNext() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

hasNext() - Method in class gorsat.BatchedReadSource

hasNext() - Method in class gorsat.process.BaseStreamIterator

hasNext() - Method in class gorsat.process.NordIterator

hasNext() - Method in class gorsat.process.ProcessIteratorAdaptor

hasNext() - Method in class gorsat.process.ProcessRowSource

hasNext() - Method in class gorsat.RowBuffer

hasRequiredColumns() - Method in class org.gorpipe.querydialogs.GridArgument

Check if required columns are defined.

hasShortDescription() - Method in interface org.gorpipe.querydialogs.FilteringColumnDefinition

Check if the column definition has a short description.

header - Variable in class org.gorpipe.gor.function.GorRowQueryFunction

HEADER_BUCKET_DIRS_KEY - Static variable in class org.gorpipe.gor.manager.BucketManager

HEADER_BUCKET_MAX_BUCKETS - Static variable in class org.gorpipe.gor.manager.BucketManager

HEADER_BUCKET_SIZE_KEY - Static variable in class org.gorpipe.gor.manager.BucketManager

HEADER_MIN_BUCKET_SIZE_KEY - Static variable in class org.gorpipe.gor.manager.BucketManager

HEADER_PREFIX - Static variable in class gorsat.process.NorStreamIterator

HeaderCVP - Class in gorsat.parser

HeaderCVP(String) - Constructor for class gorsat.parser.HeaderCVP

helpLink - Variable in class org.gorpipe.querydialogs.DialogDescription

hessian - Variable in class gorsat.Regression.LogisticRegression

HIDE - Static variable in class org.gorpipe.gor.GorScriptLexer

HIDE - Static variable in class org.gorpipe.gor.GorScriptParser

HIDE() - Method in class org.gorpipe.gor.GorScriptParser.Hide_commandContext

hide_command() - Method in class org.gorpipe.gor.GorScriptParser

hide_command() - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

Hide_commandContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Hide_commandContext

holm_bonferroni(double[], double[]) - Static method in class gorsat.process.StatisticalAdjustment

Runs a Holm-Bonferroni correction on an ordered vector of p values.

HTML - org.gorpipe.querydialogs.factory.Perspective.VIEW_TYPE

Data is displayed with one record per line.

HTML_COL - org.gorpipe.querydialogs.DialogType

A dialog which contains hints on how to render query results

I

IDENTIFIER - Static variable in class org.gorpipe.gor.GorScriptLexer

IDENTIFIER - Static variable in class org.gorpipe.gor.GorScriptParser

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.Column_nameContext

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.Column_rename_ruleContext

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.Function_nameContext

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.Generic_commandContext

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.Macro_nameContext

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.Option_valueContext

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.OptionContext

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.VariableContext

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relation_nameContext

IDENTIFIER() - Method in class org.gorpipe.gor.GorScriptParser.Virtual_relationContext

IDENTIFIER(int) - Method in class org.gorpipe.gor.GorScriptParser.Option_valueContext

IF - Static variable in class org.gorpipe.gor.GorScriptLexer

IF - Static variable in class org.gorpipe.gor.GorScriptParser

IF() - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

if_expr() - Method in class org.gorpipe.gor.GorScriptParser.Function_exprContext

if_expr() - Method in class org.gorpipe.gor.GorScriptParser

If_exprContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.If_exprContext

ignoreAllowedMismatch() - Method in class org.gorpipe.querydialogs.factory.ArgumentBuilder

imageColorName - Variable in class org.gorpipe.querydialogs.factory.PerspectiveDialogDisplayParams

The image color for dialog display.

impute(double[], double, int) - Method in class gorsat.gtgen.GTGen

Estimates the allele frequency of the cohort and then computes the genotype probabilities.

IN - Static variable in class org.gorpipe.gor.GorScriptLexer

IN - Static variable in class org.gorpipe.gor.GorScriptParser

IN() - Method in class org.gorpipe.gor.GorScriptParser.In_expressionContext

in_expression() - Method in class org.gorpipe.gor.GorScriptParser

in_expression() - Method in class org.gorpipe.gor.GorScriptParser.PredicateContext

In_expressionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.In_expressionContext

includeProtective - Variable in class org.gorpipe.gor.gava.GavaLogLikelihood

Include protective variants in calculations.

includeProtective - Variable in class org.gorpipe.gor.gava.VariantAssociation

INCOMPATIBLE_GENOTYPES - Static variable in class org.gorpipe.gor.haplotype.GBasicRulesCalculator

Indicates that the genotypes of the trio are incompatible in some way.

INDAG - Static variable in class org.gorpipe.gor.GorScriptLexer

INDAG - Static variable in class org.gorpipe.gor.GorScriptParser

INDAG() - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

indag_expression() - Method in class org.gorpipe.gor.GorScriptParser

indag_expression() - Method in class org.gorpipe.gor.GorScriptParser.PredicateContext

Indag_expressionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

infer(Row, Row) - Method in class org.gorpipe.gor.function.GorRowInferFunction

init() - Method in class gorsat.external.plink.AdjustedGORLine

init(String) - Method in class org.gorpipe.gor.function.GorRowQueryFunction

init(Configuration) - Method in class gorsat.parquet.GorParquetWriteSupport

init(GorSession) - Method in class gorsat.process.NordIterator

initAdaptor() - Method in class org.gorpipe.gor.function.GorRowQueryFunction

initializeGroup() - Method in class org.gorpipe.gor.gava.VariantAssociation

Initialize the algorithm for the next feature.

initializeTempleConfig(FileReader) - Static method in class org.gorpipe.querydialogs.factory.Perspective

initIteratorAndHeader() - Method in class gorsat.process.BaseStreamIterator

initTable(Path) - Method in class org.gorpipe.gor.manager.TableManager

Initialize the table given by path.

input_source() - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

input_source() - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

input_source() - Method in class org.gorpipe.gor.GorScriptParser

Input_sourceContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Input_sourceContext

inputFileFirstReport - Variable in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

insert(Path, BucketManager.BucketPackLevel, int, BucketableTableEntry...) - Method in class org.gorpipe.gor.manager.TableManager

Insert new data file (partition) into the table.

insert(BaseTable, BucketManager.BucketPackLevel, int, BucketableTableEntry...) - Method in class org.gorpipe.gor.manager.TableManager

Insert new data file (partition) into the table.

interpolateChart(String) - Method in class org.gorpipe.querydialogs.Dialog

interpolateQuery(String) - Method in class org.gorpipe.querydialogs.Dialog

intValue(int) - Method in class gorsat.parser.HeaderCVP

invalidateCache(String) - Static method in class gorsat.process.GorSessionCacheManager

invert(int[]) - Static method in class gorsat.process.StatisticalAdjustment

Inverts a permutation.

invertUpperTriangular(double[][], double[][], int) - Static method in class gorsat.Regression.LinearAlgebra

Inverts the upper triangular matrix n x n matrix U.

IOTestAnalyser - Class in gorsat

IOTestAnalyser(String, boolean, GorSession) - Constructor for class gorsat.IOTestAnalyser

isAdvanced() - Method in class org.gorpipe.querydialogs.Argument

Get if argument is advanced.

isBuffered() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

isBuffered() - Method in class gorsat.BatchedReadSource

isBuffered() - Method in class gorsat.process.ProcessIteratorAdaptor

isBuffered() - Method in class gorsat.process.ProcessRowSource

isCancelled() - Method in class gorsat.BatchedReadSource

isDefault() - Method in class org.gorpipe.querydialogs.factory.Perspective

Note: no enforcement of only one default perspective

isEmpty() - Method in class gorsat.RowBuffer

isEmpty() - Method in class org.gorpipe.querydialogs.Argument

Get if argument is empty.

isEmpty() - Method in class org.gorpipe.querydialogs.argument.StringArgument

isExecutable() - Method in class org.gorpipe.querydialogs.Dialog

isFormula() - Method in class gorsat.process.GorJavaUtilities.CmdParams

isFull() - Method in class gorsat.RowBuffer

isGorCmd(String) - Static method in class gorsat.process.GorJavaUtilities

isNor() - Method in class gorsat.process.GorJavaUtilities.CmdParams

isOptional() - Method in class org.gorpipe.querydialogs.Argument

Get if argument is optional.

isPGorCmd(String) - Static method in class gorsat.process.GorJavaUtilities

isPredefined - Variable in class org.gorpipe.querydialogs.factory.ColumnGroup

True if the group is predefined and should precede other groups in the view

isSingleSelection() - Method in class org.gorpipe.querydialogs.argument.StringArgument

Check if only single selection is allowed for argument.

isWaiting() - Method in class gorsat.RowBuffer

iterator() - Method in class org.gorpipe.gor.function.ListRowAdaptor

iteratorCreated(String) - Method in class org.gorpipe.gor.RequestStats

iteratorsCreated - Variable in class org.gorpipe.gor.RequestStats

K

KEYWORDS - org.gorpipe.querydialogs.factory.ArgumentContent.Format

Keywords format.

KEYWORDS_FORMAT - Static variable in class org.gorpipe.querydialogs.util.ValueFormatter

L

LAST_POSSIBLE_CHROMOSOME_VALUE - Static variable in class org.gorpipe.gor.GorConstants

LE - Static variable in class org.gorpipe.gor.GorScriptLexer

LE - Static variable in class org.gorpipe.gor.GorScriptParser

LE() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

LETTER - Static variable in class org.gorpipe.gor.GorScriptLexer

LETTER - Static variable in class org.gorpipe.gor.GorScriptParser

LIKE - Static variable in class org.gorpipe.gor.GorScriptLexer

LIKE - Static variable in class org.gorpipe.gor.GorScriptParser

LIKE() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

line - Variable in class org.gorpipe.gor.GorParsingError

LinearAlgebra - Class in gorsat.Regression

LinearRegression - Class in gorsat.Regression

LinearRegression(int, int) - Constructor for class gorsat.Regression.LinearRegression

LIST - org.gorpipe.querydialogs.factory.ArgumentContent.Format

List format.

ListRowAdaptor - Class in org.gorpipe.gor.function

ListRowAdaptor() - Constructor for class org.gorpipe.gor.function.ListRowAdaptor

loadDeferredValues(boolean, Function<String, BufferedReader>) - Method in class org.gorpipe.querydialogs.Argument

Possibly long running, should not be called on the EDT.

loadDeferredValues(boolean, Function<String, BufferedReader>) - Method in class org.gorpipe.querydialogs.argument.QueryArgument

loadQuery(String, String) - Method in class org.gorpipe.querydialogs.Dialog

LocalFileCacheClient - Class in org.gorpipe.gor.clients

Local implementation of file cache client working directly against the file system.

LocalFileCacheClient(Path) - Constructor for class org.gorpipe.gor.clients.LocalFileCacheClient

LocalFileCacheClient(Path, boolean, int) - Constructor for class org.gorpipe.gor.clients.LocalFileCacheClient

Constructs an instance of local file cache.

localHostName - Variable in class org.gorpipe.gor.RequestStats

lockTimeout(Duration) - Method in class org.gorpipe.gor.manager.BucketManager.Builder

lockTimeout(Duration) - Method in class org.gorpipe.gor.manager.TableManager.Builder

lockType(Class) - Method in class org.gorpipe.gor.manager.BucketManager.Builder

lockType(Class) - Method in class org.gorpipe.gor.manager.TableManager.Builder

LOG_REPORT - org.gorpipe.querydialogs.DialogType

A dialog representing a SDL report query, expecting a base set

LogisticRegression - Class in gorsat.Regression

This program fits a logistic regression model on a given data set.

LogisticRegression(int, int) - Constructor for class gorsat.Regression.LogisticRegression

longRunningQueryTemplate - Variable in class org.gorpipe.querydialogs.Dialog

longValue(int) - Method in class gorsat.parser.HeaderCVP

lookupFile(String) - Method in class org.gorpipe.gor.clients.LocalFileCacheClient

lookupFile(String) - Method in class org.gorpipe.gor.clients.NoCacheFileCacheClient

lr - Variable in class org.gorpipe.gor.function.ListRowAdaptor

lra - Variable in class org.gorpipe.gor.function.GorRowQueryFunction

LT - Static variable in class org.gorpipe.gor.GorScriptLexer

LT - Static variable in class org.gorpipe.gor.GorScriptParser

LT() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

M

macro_name() - Method in class org.gorpipe.gor.GorScriptParser.Def_macroContext

macro_name() - Method in class org.gorpipe.gor.GorScriptParser.Input_sourceContext

macro_name() - Method in class org.gorpipe.gor.GorScriptParser

macro_name() - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

macro_name(int) - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

Macro_nameContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Macro_nameContext

macro_value() - Method in class org.gorpipe.gor.GorScriptParser.Def_macroContext

macro_value() - Method in class org.gorpipe.gor.GorScriptParser

Macro_valueContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Macro_valueContext

MathArrayUtils - Class in org.gorpipe.gor.gava

Provides various useful functions on arrays.

maximumNumberOfSamples - Variable in class gorsat.Regression.LogisticRegression

mergeArrays(String[], String[]) - Static method in class gorsat.process.GorJavaUtilities

message - Variable in class org.gorpipe.gor.GorParsingError

minBucketSize(int) - Method in class org.gorpipe.gor.manager.BucketManager.Builder

minBucketSize(int) - Method in class org.gorpipe.gor.manager.TableManager.Builder

MINUS - Static variable in class org.gorpipe.gor.GorScriptLexer

MINUS - Static variable in class org.gorpipe.gor.GorScriptParser

MINUS() - Method in class org.gorpipe.gor.GorScriptParser.Column_rangeContext

MINUS() - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

MINUS() - Method in class org.gorpipe.gor.GorScriptParser.OptionContext

MINUS() - Method in class org.gorpipe.gor.GorScriptParser.Signed_factorContext

MINUS(int) - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

MIXED - gorsat.process.GorJavaUtilities.Phenotypes

modeNames - Static variable in class org.gorpipe.gor.GorScriptLexer

multiLookup(String[], boolean) - Method in class org.gorpipe.gor.clients.LocalFileCacheClient

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaBoolean

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDouble

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDoubleConstant

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaInteger

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaIntegerConstant

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLong

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLongConstant

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaString

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaStringConstant

multipliedWith(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaVariable

multipliedWith(TypedCalcLambda) - Method in interface gorsat.parser.TypedCalcLambda

multiply(double) - Method in class gorsat.parser.CalcLambdaBoolean

multiply(double) - Method in class gorsat.parser.CalcLambdaDouble

multiply(double) - Method in class gorsat.parser.CalcLambdaDoubleConstant

multiply(double) - Method in class gorsat.parser.CalcLambdaInteger

multiply(double) - Method in class gorsat.parser.CalcLambdaIntegerConstant

multiply(double) - Method in class gorsat.parser.CalcLambdaLong

multiply(double) - Method in class gorsat.parser.CalcLambdaLongConstant

multiply(double) - Method in class gorsat.parser.CalcLambdaString

multiply(double) - Method in class gorsat.parser.CalcLambdaStringConstant

multiply(double) - Method in class gorsat.parser.CalcLambdaVariable

multiply(double) - Method in interface gorsat.parser.TypedCalcLambda

multiply(int) - Method in class gorsat.parser.CalcLambdaBoolean

multiply(int) - Method in class gorsat.parser.CalcLambdaDouble

multiply(int) - Method in class gorsat.parser.CalcLambdaDoubleConstant

multiply(int) - Method in class gorsat.parser.CalcLambdaInteger

multiply(int) - Method in class gorsat.parser.CalcLambdaIntegerConstant

multiply(int) - Method in class gorsat.parser.CalcLambdaLong

multiply(int) - Method in class gorsat.parser.CalcLambdaLongConstant

multiply(int) - Method in class gorsat.parser.CalcLambdaString

multiply(int) - Method in class gorsat.parser.CalcLambdaStringConstant

multiply(int) - Method in class gorsat.parser.CalcLambdaVariable

multiply(int) - Method in interface gorsat.parser.TypedCalcLambda

multiply(long) - Method in class gorsat.parser.CalcLambdaBoolean

multiply(long) - Method in class gorsat.parser.CalcLambdaDouble

multiply(long) - Method in class gorsat.parser.CalcLambdaDoubleConstant

multiply(long) - Method in class gorsat.parser.CalcLambdaInteger

multiply(long) - Method in class gorsat.parser.CalcLambdaIntegerConstant

multiply(long) - Method in class gorsat.parser.CalcLambdaLong

multiply(long) - Method in class gorsat.parser.CalcLambdaLongConstant

multiply(long) - Method in class gorsat.parser.CalcLambdaString

multiply(long) - Method in class gorsat.parser.CalcLambdaStringConstant

multiply(long) - Method in class gorsat.parser.CalcLambdaVariable

multiply(long) - Method in interface gorsat.parser.TypedCalcLambda

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaBoolean

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaDouble

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaDoubleConstant

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaInteger

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaIntegerConstant

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaLong

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaLongConstant

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaString

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaStringConstant

multiply(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaVariable

multiply(CalcLambdaDouble) - Method in interface gorsat.parser.TypedCalcLambda

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaBoolean

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaDouble

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaDoubleConstant

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaInteger

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaIntegerConstant

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaLong

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaLongConstant

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaString

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaStringConstant

multiply(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaVariable

multiply(CalcLambdaInteger) - Method in interface gorsat.parser.TypedCalcLambda

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaBoolean

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaDouble

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaDoubleConstant

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaInteger

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaIntegerConstant

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaLong

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaLongConstant

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaString

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaStringConstant

multiply(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaVariable

multiply(CalcLambdaLong) - Method in interface gorsat.parser.TypedCalcLambda

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaBoolean

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaDouble

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaDoubleConstant

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaInteger

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaIntegerConstant

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaLong

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaLongConstant

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaString

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaStringConstant

multiply(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaVariable

multiply(CalcLambdaVariable) - Method in interface gorsat.parser.TypedCalcLambda

N

name - Variable in class org.gorpipe.querydialogs.ArgumentDescription

name - Variable in class org.gorpipe.querydialogs.DialogDescription

Dialog name.

name - Variable in class org.gorpipe.querydialogs.factory.ColumnGroup

Name of this group.

NAN - Static variable in class org.gorpipe.gor.GorScriptLexer

NAN - Static variable in class org.gorpipe.gor.GorScriptParser

NAN() - Method in class org.gorpipe.gor.GorScriptParser.NumberContext

NE - Static variable in class org.gorpipe.gor.GorScriptLexer

NE - Static variable in class org.gorpipe.gor.GorScriptParser

NE() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

negate() - Method in class gorsat.parser.CalcLambdaBoolean

negate() - Method in class gorsat.parser.CalcLambdaDouble

negate() - Method in class gorsat.parser.CalcLambdaDoubleConstant

negate() - Method in class gorsat.parser.CalcLambdaInteger

negate() - Method in class gorsat.parser.CalcLambdaIntegerConstant

negate() - Method in class gorsat.parser.CalcLambdaLong

negate() - Method in class gorsat.parser.CalcLambdaLongConstant

negate() - Method in class gorsat.parser.CalcLambdaString

negate() - Method in class gorsat.parser.CalcLambdaStringConstant

negate() - Method in class gorsat.parser.CalcLambdaVariable

negate() - Method in interface gorsat.parser.TypedCalcLambda

nested_query() - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

nested_query() - Method in class org.gorpipe.gor.GorScriptParser

Nested_queryContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Nested_queryContext

NetworkTemplateLoader - Class in org.gorpipe.querydialogs.templating

NetworkTemplateLoader(String, FileReader) - Constructor for class org.gorpipe.querydialogs.templating.NetworkTemplateLoader

newBuilder() - Static method in class org.gorpipe.gor.manager.TableManager

newBuilder(BaseTable) - Static method in class org.gorpipe.gor.manager.BucketManager

next() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

next() - Method in class gorsat.BatchedReadSource

Make sure hasNext is called before this method

next() - Method in class gorsat.external.plink.AdjustedGORLineIterator

next() - Method in class gorsat.external.plink.GORLine

next() - Method in class gorsat.process.BaseStreamIterator

next() - Method in class gorsat.process.GorStreamIterator

next() - Method in class gorsat.process.NordIterator

next() - Method in class gorsat.process.NorStreamIterator

next() - Method in class gorsat.process.ProcessIteratorAdaptor

next() - Method in class gorsat.process.ProcessRowSource

next() - Method in class gorsat.RowBuffer

next() - Method in class org.gorpipe.gor.gava.CombinationIterator

Advance to the next combination.

nextRowBuffer() - Method in class gorsat.RowBuffer

NO_PACKING - org.gorpipe.gor.manager.BucketManager.BucketPackLevel

NoCacheFileCacheClient - Class in org.gorpipe.gor.clients

Stub implememntation of FileCache, that doesn't do any caching - for running with caching disabled.

NoCacheFileCacheClient(Path) - Constructor for class org.gorpipe.gor.clients.NoCacheFileCacheClient

nodeAddedOrUpdated(GorScriptTask) - Method in class org.gorpipe.gor.RequestStats

nodes - Variable in class org.gorpipe.gor.RequestStats

noMaxAlleleCounts - Variable in class org.gorpipe.gor.gava.GavaLogLikelihood

No max allele count for each case in dominant/recessive models.

NOR - Static variable in class org.gorpipe.gor.GorScriptLexer

NOR - Static variable in class org.gorpipe.gor.GorScriptParser

NOR() - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

nor_expression() - Method in class org.gorpipe.gor.GorScriptParser.Gornor_expressionContext

nor_expression() - Method in class org.gorpipe.gor.GorScriptParser

Nor_expressionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

NordIterator - Class in gorsat.process

Iterator to access data from a nor dictionary file.

NordIterator(String, boolean, String[], String, boolean, boolean) - Constructor for class gorsat.process.NordIterator

Nor dictionary constructor.

NordIteratorEntry - Class in gorsat.process

NordIteratorEntry(String, String) - Constructor for class gorsat.process.NordIteratorEntry

NorStreamIterator - Class in gorsat.process

NorStreamIterator(Supplier<Stream<String>>) - Constructor for class gorsat.process.NorStreamIterator

NorToGorPipeStep - Class in gorsat.process

Created by sigmar on 16/08/2016.

NorToGorPipeStep(String) - Constructor for class gorsat.process.NorToGorPipeStep

NOT - Static variable in class org.gorpipe.gor.GorScriptLexer

NOT - Static variable in class org.gorpipe.gor.GorScriptParser

NOT() - Method in class org.gorpipe.gor.GorScriptParser.Not_rel_exprContext

not_rel_expr() - Method in class org.gorpipe.gor.GorScriptParser

not_rel_expr() - Method in class org.gorpipe.gor.GorScriptParser.Predicate_factorContext

Not_rel_exprContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Not_rel_exprContext

number() - Method in class org.gorpipe.gor.GorScriptParser

number() - Method in class org.gorpipe.gor.GorScriptParser.ValueContext

NUMBER - Static variable in class org.gorpipe.gor.GorScriptLexer

NUMBER - Static variable in class org.gorpipe.gor.GorScriptParser

NUMBER - Static variable in class org.gorpipe.querydialogs.ArgumentType

NUMBER() - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

NUMBER() - Method in class org.gorpipe.gor.GorScriptParser.Column_numberContext

NUMBER() - Method in class org.gorpipe.gor.GorScriptParser.Column_rename_ruleContext

NUMBER() - Method in class org.gorpipe.gor.GorScriptParser.NumberContext

NUMBER() - Method in class org.gorpipe.gor.GorScriptParser.Option_valueContext

NUMBER(int) - Method in class org.gorpipe.gor.GorScriptParser.Option_valueContext

NUMBER_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

NumberArgument - Class in org.gorpipe.querydialogs.argument

Represents an argument that expects a numeric value.

NumberArgument(NumberArgument) - Constructor for class org.gorpipe.querydialogs.argument.NumberArgument

Constructor that copies the input number argument.

NumberArgument(ArgumentDescription, Boolean, Object, List<? extends Object>, URI, List<String>, Boolean, Integer, Number, Number, ArgumentType) - Constructor for class org.gorpipe.querydialogs.argument.NumberArgument

NumberArgumentBuilder - Class in org.gorpipe.querydialogs.factory.builder

Responsible for building number arguments.

NumberArgumentBuilder(FileReader) - Constructor for class org.gorpipe.querydialogs.factory.builder.NumberArgumentBuilder

NumberContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.NumberContext

numberOfDepVars - Variable in class gorsat.Regression.LogisticRegression

numberOfIterations - Variable in class gorsat.Regression.LogisticRegression

numberOfSamples - Variable in class gorsat.Regression.LogisticRegression

numCases - Variable in class org.gorpipe.gor.gava.GavaLogLikelihood

numchar2Genotype - Static variable in class gorsat.process.GenotypeLookupUtilities

numControls - Variable in class org.gorpipe.gor.gava.GavaLogLikelihood

O

oneOver - Variable in class gorsat.Regression.LogisticRegression

OPEN_BRACE - Static variable in class org.gorpipe.gor.GorScriptLexer

OPEN_BRACE - Static variable in class org.gorpipe.gor.GorScriptParser

OPEN_BRACE() - Method in class org.gorpipe.gor.GorScriptParser.Column_rename_ruleContext

OPEN_PAREN - Static variable in class org.gorpipe.gor.GorScriptLexer

OPEN_PAREN - Static variable in class org.gorpipe.gor.GorScriptParser

OPEN_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Column_wildcardContext

OPEN_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Function_callContext

OPEN_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

OPEN_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

OPEN_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Paren_exprContext

OPEN_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.Paren_rel_exprContext

OPEN_PAREN() - Method in class org.gorpipe.gor.GorScriptParser.String_literal_listContext

option() - Method in class org.gorpipe.gor.GorScriptParser

option() - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

option(int) - Method in class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

option_value() - Method in class org.gorpipe.gor.GorScriptParser

option_value() - Method in class org.gorpipe.gor.GorScriptParser.OptionContext

OPTION_VALUE - Static variable in class org.gorpipe.gor.GorScriptLexer

OPTION_VALUE - Static variable in class org.gorpipe.gor.GorScriptParser

Option_valueContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Option_valueContext

optional_power_factor() - Method in class org.gorpipe.gor.GorScriptParser

optional_power_factor() - Method in class org.gorpipe.gor.GorScriptParser.TermContext

optional_power_factor(int) - Method in class org.gorpipe.gor.GorScriptParser.TermContext

Optional_power_factorContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Optional_power_factorContext

OptionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.OptionContext

OptionEvaluator - Class in gorsat.process

OptionEvaluator(GorContext) - Constructor for class gorsat.process.OptionEvaluator

options_and_args() - Method in class org.gorpipe.gor.GorScriptParser.Generic_commandContext

options_and_args() - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

options_and_args() - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

options_and_args() - Method in class org.gorpipe.gor.GorScriptParser

options_and_args() - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

Options_and_argsContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Options_and_argsContext

OR - Static variable in class org.gorpipe.gor.GorScriptLexer

OR - Static variable in class org.gorpipe.gor.GorScriptParser

OR() - Method in class org.gorpipe.gor.GorScriptParser.Rel_exprContext

OR(int) - Method in class org.gorpipe.gor.GorScriptParser.Rel_exprContext

order - Variable in class org.gorpipe.querydialogs.factory.ColumnGroup

For groups that are predefined, this is the ranking between them.

ordinal() - Method in class org.gorpipe.querydialogs.ArgumentType

org.gorpipe.gor - package org.gorpipe.gor

org.gorpipe.gor.clients - package org.gorpipe.gor.clients

org.gorpipe.gor.function - package org.gorpipe.gor.function

org.gorpipe.gor.gava - package org.gorpipe.gor.gava

org.gorpipe.gor.haplotype - package org.gorpipe.gor.haplotype

org.gorpipe.gor.manager - package org.gorpipe.gor.manager

org.gorpipe.gor.util - package org.gorpipe.gor.util

org.gorpipe.querydialogs - package org.gorpipe.querydialogs

org.gorpipe.querydialogs.argument - package org.gorpipe.querydialogs.argument

org.gorpipe.querydialogs.factory - package org.gorpipe.querydialogs.factory

org.gorpipe.querydialogs.factory.builder - package org.gorpipe.querydialogs.factory.builder

org.gorpipe.querydialogs.templating - package org.gorpipe.querydialogs.templating

org.gorpipe.querydialogs.util - package org.gorpipe.querydialogs.util

OTHER_DIALOG_CATEGORY - Static variable in class org.gorpipe.querydialogs.factory.PerspectiveDialogFactory

Group used for dialogs where dialog group attribute is not defined

P

packageVersion - Variable in class org.gorpipe.querydialogs.Dialog

parallelExecute() - Method in class gorsat.process.ParallelExecutor

ParallelExecutor - Class in gorsat.process

This class encapsulates a general execution in parallel of the pgor command when a standard parallel query handler is not used.

ParallelExecutor(int, Function0<Unit>[]) - Constructor for class gorsat.process.ParallelExecutor

paren_expr() - Method in class org.gorpipe.gor.GorScriptParser

paren_expr() - Method in class org.gorpipe.gor.GorScriptParser.XfactorContext

Paren_exprContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Paren_exprContext

paren_rel_expr() - Method in class org.gorpipe.gor.GorScriptParser

paren_rel_expr() - Method in class org.gorpipe.gor.GorScriptParser.Predicate_factorContext

Paren_rel_exprContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Paren_rel_exprContext

pArray - Static variable in class gorsat.process.GorJavaUtilities

parse(String) - Method in class gorsat.process.FreemarkerReportBuilder

parse(String) - Static method in class gorsat.process.NordIteratorEntry

parse(String) - Method in class org.gorpipe.gor.SyntaxChecker

parseCalc(String) - Method in class org.gorpipe.gor.SyntaxChecker

parseContent(String) - Static method in class org.gorpipe.querydialogs.factory.ArgumentContent

Parse content string.

parseDouble(CharSequence, int, int) - Static method in class gorsat.gtgen.GPParser

Parses a double from a subsequence of a character sequence.

parseDoubleTriplet(CharSequence, char) - Static method in class gorsat.gtgen.GPParser

The method does not do any validations so the the functionality is undefined if the input is bad.

parseFilter(String) - Method in class org.gorpipe.gor.SyntaxChecker

parseInt(CharSequence, int, int) - Static method in class gorsat.gtgen.GPParser

Parses an integer from a subsequence of a character sequence.

parseIntTriplet(CharSequence, char) - Static method in class gorsat.gtgen.GPParser

The method does not do any validations so the the functionality is undefined if the input is bad.

parseValue(String) - Method in class org.gorpipe.querydialogs.argument.DateArgument

parseValue(String) - Method in class org.gorpipe.querydialogs.argument.NumberArgument

parseValue(String) - Method in class org.gorpipe.querydialogs.Argument

path2LoadedValues - Static variable in class org.gorpipe.querydialogs.Argument

path2LoadedValuesHeader - Static variable in class org.gorpipe.querydialogs.Argument

Perspective - Class in org.gorpipe.querydialogs.factory

Represents a particular perspective onto data returned from a dialog query.

Perspective(String, String, String, Boolean, String, String, List<Object>, List<Object>) - Constructor for class org.gorpipe.querydialogs.factory.Perspective

Perspective(Perspective) - Constructor for class org.gorpipe.querydialogs.factory.Perspective

Constructor that copies the input perspective.

Perspective.VIEW_TYPE - Enum in org.gorpipe.querydialogs.factory

Defines the type of view that should be selected by default when the perspective is activated.

PerspectiveDialog - Class in org.gorpipe.querydialogs.factory

PerspectiveDialog(Map<String, ? extends Object>, FileReader, QueryEvaluator, DialogDescription, PerspectiveDialogDisplayParams, DialogType, String, String, String, String, ChartDataType, List<Argument>, String, List<? extends Object>, List<Perspective>, List<ColumnGroup>, List<ReportCommand>, String, String, String, String, String, String) - Constructor for class org.gorpipe.querydialogs.factory.PerspectiveDialog

PerspectiveDialog(PerspectiveDialog) - Constructor for class org.gorpipe.querydialogs.factory.PerspectiveDialog

PerspectiveDialogDisplayParams - Class in org.gorpipe.querydialogs.factory

Class for defining a perspective dialog display parameters.

PerspectiveDialogDisplayParams(String, String) - Constructor for class org.gorpipe.querydialogs.factory.PerspectiveDialogDisplayParams

Constructor.

PerspectiveDialogFactory - Class in org.gorpipe.querydialogs.factory

PerspectiveDialogFactory(FileReader, QueryEvaluator) - Constructor for class org.gorpipe.querydialogs.factory.PerspectiveDialogFactory

PerspectiveDialogFactory(FileReader, QueryEvaluator, boolean) - Constructor for class org.gorpipe.querydialogs.factory.PerspectiveDialogFactory

PGOR - Static variable in class org.gorpipe.gor.GorScriptLexer

PGOR - Static variable in class org.gorpipe.gor.GorScriptParser

PGOR() - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

pgor_expression() - Method in class org.gorpipe.gor.GorScriptParser.Gornor_expressionContext

pgor_expression() - Method in class org.gorpipe.gor.GorScriptParser

Pgor_expressionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

PhenoInfo(GorJavaUtilities.Phenotypes, String[]) - Constructor for class gorsat.process.GorJavaUtilities.PhenoInfo

phenotype - Variable in class gorsat.process.GorJavaUtilities.PhenoInfo

phenotypeNames - Variable in class gorsat.process.GorJavaUtilities.PhenoInfo

pickBucketDir() - Method in class org.gorpipe.gor.manager.BucketManager

Pick a bucket dir from a list.

PIPE - Static variable in class org.gorpipe.gor.GorScriptLexer

PIPE - Static variable in class org.gorpipe.gor.GorScriptParser

PIPE() - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

PIPE() - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

PIPE() - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

PIPE(int) - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

PIPE(int) - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

PIPE(int) - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

pipe_command() - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

pipe_command() - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

pipe_command() - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

pipe_command() - Method in class org.gorpipe.gor.GorScriptParser

pipe_command(int) - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

pipe_command(int) - Method in class org.gorpipe.gor.GorScriptParser.Nor_expressionContext

pipe_command(int) - Method in class org.gorpipe.gor.GorScriptParser.Pgor_expressionContext

Pipe_commandContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

PLAINTEXT - org.gorpipe.querydialogs.ChartDataType

PlinkAdjustAdaptor - Class in gorsat.external.plink

This analysis class collects gor or vcf lines and writes them in batches to a temporary vcf files read by plink2 process

PlinkAdjustAdaptor(String, boolean) - Constructor for class gorsat.external.plink.PlinkAdjustAdaptor

PlinkAdjustAdaptor(String, String, boolean) - Constructor for class gorsat.external.plink.PlinkAdjustAdaptor

PlinkAdjustment - Class in gorsat.external.plink

PlinkAdjustment(String[], Path, String, String, String, boolean) - Constructor for class gorsat.external.plink.PlinkAdjustment

PlinkArguments - Class in gorsat.external.plink

This class stores the phenotype file for plink vcf input header generation Also the argument to the plink external process

PlinkArguments(String[], String, String, String, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, float, float, float) - Constructor for class gorsat.external.plink.PlinkArguments

PlinkProcessAdaptor - Class in gorsat.external.plink

This analysis class collects gor or vcf lines and writes them in batches to a temporary vcf files read by plink2 process

PlinkProcessAdaptor(GorSession, PlinkArguments, int, int, int, int, boolean, float, boolean, String) - Constructor for class gorsat.external.plink.PlinkProcessAdaptor

PlinkVcfProcessAdaptor - Class in gorsat.external.plink

This analysis class collects gor or vcf lines and writes them in batches to a temporary vcf files read by plink2 process

PlinkVcfProcessAdaptor(GorSession, PlinkArguments, int, int, int, int, boolean, float, boolean, String, String) - Constructor for class gorsat.external.plink.PlinkVcfProcessAdaptor

plToGp(CharSequence, char) - Static method in class gorsat.gtgen.GPParser

PLUS - Static variable in class org.gorpipe.gor.GorScriptLexer

PLUS - Static variable in class org.gorpipe.gor.GorScriptParser

PLUS() - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

PLUS() - Method in class org.gorpipe.gor.GorScriptParser.Signed_factorContext

PLUS(int) - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

PN_LISTS - Static variable in class org.gorpipe.querydialogs.ArgumentType

PN_LISTS_ENTRIES - Static variable in class org.gorpipe.querydialogs.ArgumentType

PN_LISTS_ENTRIES_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

PN_LISTS_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

pop() - Method in class gorsat.RowBuffer

pos - Variable in class org.gorpipe.gor.GorParsingError

POSITION_RANGE - Static variable in class org.gorpipe.querydialogs.ArgumentType

POSITION_RANGE_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

pow(double, int) - Static method in class gorsat.gtgen.PowerLookupTable

Computes x^n, n ≥ 0.

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaBoolean

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDouble

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDoubleConstant

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaInteger

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaIntegerConstant

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLong

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLongConstant

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaString

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaStringConstant

pow(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaVariable

pow(TypedCalcLambda) - Method in interface gorsat.parser.TypedCalcLambda

POW - Static variable in class org.gorpipe.gor.GorScriptLexer

POW - Static variable in class org.gorpipe.gor.GorScriptParser

POW() - Method in class org.gorpipe.gor.GorScriptParser.Power_factorContext

power_factor() - Method in class org.gorpipe.gor.GorScriptParser.Optional_power_factorContext

power_factor() - Method in class org.gorpipe.gor.GorScriptParser

Power_factorContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Power_factorContext

PowerLookupTable - Class in gorsat.gtgen

prArray - Static variable in class gorsat.process.GorJavaUtilities

predicate() - Method in class org.gorpipe.gor.GorScriptParser

predicate() - Method in class org.gorpipe.gor.GorScriptParser.Predicate_factorContext

predicate_factor() - Method in class org.gorpipe.gor.GorScriptParser

predicate_factor() - Method in class org.gorpipe.gor.GorScriptParser.Rel_termContext

predicate_factor(int) - Method in class org.gorpipe.gor.GorScriptParser.Rel_termContext

Predicate_factorContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Predicate_factorContext

PredicateContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.PredicateContext

prepareForWrite(RecordConsumer) - Method in class gorsat.parquet.GorParquetWriteSupport

print(BaseTable.TableFilter) - Method in class org.gorpipe.gor.manager.TableManager

process(Row) - Method in class gorsat.external.plink.PlinkAdjustAdaptor

process(Row) - Method in class gorsat.external.plink.PlinkProcessAdaptor

process(Row) - Method in class gorsat.IOTestAnalyser

process(Row) - Method in class gorsat.parquet.GorParquetFileOut

process(Row) - Method in class gorsat.process.NorToGorPipeStep

process(Row) - Method in class org.gorpipe.gor.function.ListRowAdaptor

ProcessIteratorAdaptor - Class in gorsat.process

Created by sigmar on 03/11/15.

ProcessIteratorAdaptor(GorContext, String, String, Iterator<Row>, Analysis, String, boolean, Optional<String>, boolean, boolean) - Constructor for class gorsat.process.ProcessIteratorAdaptor

ProcessRowSource - Class in gorsat.process

Created by sigmar on 12/02/16.

ProcessRowSource(String, String, boolean, GorSession, GenomicRange.Range, String) - Constructor for class gorsat.process.ProcessRowSource

ProcessRowSource(String, String, boolean, GorSession, GenomicRange.Range, String, int) - Constructor for class gorsat.process.ProcessRowSource

ProcessSource - Class in gorsat.process

Created by sigmar on 12/02/16.

ProcessSource() - Constructor for class gorsat.process.ProcessSource

prod - Variable in class gorsat.Regression.LogisticRegression

produceHeaderFromData() - Method in class gorsat.process.BaseStreamIterator

projectDataReplacement(String, String) - Static method in class gorsat.process.GorJavaUtilities

projectReplacement(String, String, String, String) - Static method in class gorsat.process.GorJavaUtilities

projectReplacement(String, GorSession) - Static method in class gorsat.process.GorJavaUtilities

PROPERTY_BASE_CHARTCOLUMNS - Static variable in class org.gorpipe.querydialogs.Dialog

The property name for the dialog's base query (not interpolated).

PROPERTY_BASE_CHARTDF - Static variable in class org.gorpipe.querydialogs.Dialog

The property name for dialog's interpolated query (read only).

PROPERTY_BASE_CHARTEXEC - Static variable in class org.gorpipe.querydialogs.Dialog

The property name for the dialog's base query (not interpolated).

PROPERTY_BASE_CHARTSCRIPT - Static variable in class org.gorpipe.querydialogs.Dialog

The property name for the dialog's base query (not interpolated).

PROPERTY_BASE_QUERY - Static variable in class org.gorpipe.querydialogs.Dialog

The property name for the dialog's base query (not interpolated).

PROPERTY_CHART - Static variable in class org.gorpipe.querydialogs.Dialog

The property name for dialog's interpolated query (read only).

PROPERTY_DATE_VALUE - Static variable in class org.gorpipe.querydialogs.argument.DateArgument

The property name for the argument's date value.

PROPERTY_EXECUTABLE - Static variable in class org.gorpipe.querydialogs.Dialog

The property name for the dialog's executable state.

PROPERTY_HTML_TEMPLATE - Static variable in class org.gorpipe.querydialogs.factory.PerspectiveDialog

PROPERTY_NUMBER_VALUE - Static variable in class org.gorpipe.querydialogs.argument.NumberArgument

The property name for the argument's numeric value.

PROPERTY_OPERATOR - Static variable in class org.gorpipe.querydialogs.Argument

The property name for the argument's current operator.

PROPERTY_QUERY - Static variable in class org.gorpipe.querydialogs.Dialog

The property name for dialog's interpolated query (read only).

PROPERTY_TYPE - Static variable in class org.gorpipe.querydialogs.Dialog

The property name for the dialog's type.

PROPERTY_VALUE - Static variable in class org.gorpipe.querydialogs.Argument

The property name for the argument's raw value.

prprFunction - Static variable in class gorsat.process.GorJavaUtilities

prprprFunction - Static variable in class gorsat.process.GorJavaUtilities

pValues - Variable in class gorsat.Regression.LinearRegression

pValues - Variable in class gorsat.Regression.LogisticRegression

Q

QRFactorize(double[][], double[], int) - Static method in class gorsat.Regression.LinearAlgebra

QR decomposes X.

QUANTITATIVE - gorsat.process.GorJavaUtilities.Phenotypes

query - Variable in class org.gorpipe.gor.RequestStats

query(String) - Method in class org.gorpipe.gor.RequestStats

QUERY - Static variable in class org.gorpipe.querydialogs.ArgumentType

query_expression() - Method in class org.gorpipe.gor.GorScriptParser.Create_statementContext

query_expression() - Method in class org.gorpipe.gor.GorScriptParser

query_expression() - Method in class org.gorpipe.gor.GorScriptParser.ScriptContext

Query_expressionContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Query_expressionContext

QUERY_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

For creating a selection dialog from a nor/gor query

QueryArgument - Class in org.gorpipe.querydialogs.argument

Represents an argument that uses a gor/nor query to create the values the user can select from.

QueryArgument(QueryArgument) - Constructor for class org.gorpipe.querydialogs.argument.QueryArgument

QueryArgument(ArgumentDescription, Boolean, Object, String, List<String>, Boolean, Integer, QueryEvaluator) - Constructor for class org.gorpipe.querydialogs.argument.QueryArgument

QueryArgumentBuilder - Class in org.gorpipe.querydialogs.factory.builder

Responsible for building GOR/NOR query arguments.

QueryArgumentBuilder(FileReader, QueryEvaluator) - Constructor for class org.gorpipe.querydialogs.factory.builder.QueryArgumentBuilder

QueryEvalMethodModel - Class in org.gorpipe.querydialogs.templating

QueryEvalMethodModel(QueryEvaluator) - Constructor for class org.gorpipe.querydialogs.templating.QueryEvalMethodModel

R

RangedNumberFormatter - Class in org.gorpipe.querydialogs

A number formatter that can constrain values to a minimum and/or maximum value.

RangedNumberFormatter(Double, Double) - Constructor for class org.gorpipe.querydialogs.RangedNumberFormatter

readWhiteList(String) - Static method in class gorsat.process.GorJavaUtilities

readWhiteList(Path) - Static method in class gorsat.process.GorJavaUtilities

RecessiveLogLikelihood - Class in org.gorpipe.gor.gava

Log likelihood calculator for recessive variant association.

RecessiveLogLikelihood() - Constructor for class org.gorpipe.gor.gava.RecessiveLogLikelihood

reduce(int) - Method in class gorsat.RowBuffer

registerArgumentBuilder(ArgumentType, ArgumentBuilder) - Method in class org.gorpipe.querydialogs.factory.AbstractDialogFactory

Registers an ArgumentBuilder to use for the given ArgumentType.

RegularLogLikelihood - Class in org.gorpipe.gor.gava

Log likelihood calculator for regular variant association.

RegularLogLikelihood() - Constructor for class org.gorpipe.gor.gava.RegularLogLikelihood

rel_expr() - Method in class org.gorpipe.gor.GorScriptParser.If_exprContext

rel_expr() - Method in class org.gorpipe.gor.GorScriptParser.Not_rel_exprContext

rel_expr() - Method in class org.gorpipe.gor.GorScriptParser.Paren_rel_exprContext

rel_expr() - Method in class org.gorpipe.gor.GorScriptParser

rel_expr() - Method in class org.gorpipe.gor.GorScriptParser.Where_commandContext

Rel_exprContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Rel_exprContext

rel_term() - Method in class org.gorpipe.gor.GorScriptParser.Rel_exprContext

rel_term() - Method in class org.gorpipe.gor.GorScriptParser

rel_term(int) - Method in class org.gorpipe.gor.GorScriptParser.Rel_exprContext

Rel_termContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Rel_termContext

remove() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

removeListDataListener(ListDataListener) - Method in class org.gorpipe.querydialogs.AbstractListBean

removePropertyChangeListener(PropertyChangeListener) - Method in class org.gorpipe.querydialogs.BasicBean

Removes a PropertyChangeListener from the listener list.

removePropertyChangeListener(String, PropertyChangeListener) - Method in class org.gorpipe.querydialogs.BasicBean

Removes a PropertyChangeListener from the listener list for a specific property.

RENAME - Static variable in class org.gorpipe.gor.GorScriptLexer

RENAME - Static variable in class org.gorpipe.gor.GorScriptParser

RENAME() - Method in class org.gorpipe.gor.GorScriptParser.Rename_commandContext

rename_command() - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

rename_command() - Method in class org.gorpipe.gor.GorScriptParser

Rename_commandContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Rename_commandContext

REPLACE - Static variable in class org.gorpipe.gor.GorScriptLexer

REPLACE - Static variable in class org.gorpipe.gor.GorScriptParser

REPLACE() - Method in class org.gorpipe.gor.GorScriptParser.Function_nameContext

REPLACE() - Method in class org.gorpipe.gor.GorScriptParser.Replace_commandContext

replace_command() - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

replace_command() - Method in class org.gorpipe.gor.GorScriptParser

Replace_commandContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Replace_commandContext

REPORT - org.gorpipe.querydialogs.DialogType

A dialog representing a SDL report query (EVR)

ReportViewer - Interface in org.gorpipe.querydialogs.factory

Report container is implemented by viewmanagers that will display Reports created from Report Forms.

requestQuery(String, FileReader, QueryEvaluator, String, Map<String, String>, String) - Static method in class gorsat.FreemarkerQueryUtilities

Returns a gor query from the input resource file.

RequestStats - Class in org.gorpipe.gor

RequestStats(GorSession) - Constructor for class org.gorpipe.gor.RequestStats

requiredColumns - Variable in class org.gorpipe.querydialogs.GridArgument

Grid required columns.

requiredColumnsOnly - Variable in class org.gorpipe.querydialogs.GridArgument

Defines if only required columns may exist in grid.

reset() - Method in class gorsat.gtgen.GTGen

Resets the object.

reset() - Method in class org.gorpipe.querydialogs.templating.SkipFirstMethodModel

resolveWhiteListFilePath(String, Path) - Static method in class gorsat.process.GorJavaUtilities

Helper method to resolve whitelist file path (from config file) to full path.

RLIKE - Static variable in class org.gorpipe.gor.GorScriptLexer

RLIKE - Static variable in class org.gorpipe.gor.GorScriptParser

RLIKE() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

RowBuffer - Class in gorsat

An array of GOR row objects implementing iterator interface The user class, BatchedReadSource, ensures thread safety

RowBuffer() - Constructor for class gorsat.RowBuffer

RowBuffer(int) - Constructor for class gorsat.RowBuffer

RowBuffer(int, int, RowBuffer) - Constructor for class gorsat.RowBuffer

RowBuffer(int, RowBuffer) - Constructor for class gorsat.RowBuffer

RowBuffer(RowBuffer) - Constructor for class gorsat.RowBuffer

ROWMODEL - org.gorpipe.querydialogs.ChartDataType

RULE_argument - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_calc_command - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_calc_expression - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_calc_expression_list - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_column_list - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_column_name - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_column_number - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_column_range - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_column_ref - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_column_rename_rule - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_column_selection - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_column_wildcard - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_compare_expressions - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_create_statement - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_def_macro - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_expression - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_factor - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_filename - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_function_call - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_function_expr - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_function_name - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_generic_command - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_gor_expression - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_gornor_expression - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_hide_command - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_if_expr - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_in_expression - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_indag_expression - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_input_source - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_macro_name - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_macro_value - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_nested_query - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_nor_expression - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_not_rel_expr - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_number - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_option - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_option_value - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_optional_power_factor - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_options_and_args - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_paren_expr - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_paren_rel_expr - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_pgor_expression - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_pipe_command - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_power_factor - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_predicate - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_predicate_factor - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_query_expression - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_rel_expr - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_rel_term - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_rename_command - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_replace_command - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_script - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_select_command - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_signed_factor - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_string_literal - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_string_literal_list - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_term - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_value - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_variable - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_virtual_relation - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_virtual_relation_name - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_where_command - Static variable in class org.gorpipe.gor.GorScriptParser

RULE_xfactor - Static variable in class org.gorpipe.gor.GorScriptParser

ruleNames - Static variable in class org.gorpipe.gor.GorScriptLexer

ruleNames - Static variable in class org.gorpipe.gor.GorScriptParser

run(GenomicIterator, Processor) - Method in class gorsat.process.GenericGorRunner

runRegression(double[]) - Method in class gorsat.Regression.LinearRegression

runRegression(double[][], boolean[], int, double, int) - Method in class gorsat.Regression.LogisticRegression

S

S_EQ - Static variable in class org.gorpipe.gor.GorScriptLexer

S_EQ - Static variable in class org.gorpipe.gor.GorScriptParser

S_EQ() - Method in class org.gorpipe.gor.GorScriptParser.Calc_commandContext

S_EQ() - Method in class org.gorpipe.gor.GorScriptParser.Compare_expressionsContext

S_EQ() - Method in class org.gorpipe.gor.GorScriptParser.Create_statementContext

S_EQ() - Method in class org.gorpipe.gor.GorScriptParser.Def_macroContext

safeString(Object) - Static method in class org.gorpipe.querydialogs.factory.ArgumentBuilder

save(BaseTable, BucketManager.BucketPackLevel, int) - Method in class org.gorpipe.gor.manager.TableManager

Save the given table.

saveArgumentValues(Path) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

saveToJson() - Method in class org.gorpipe.gor.RequestStats

script() - Method in class org.gorpipe.gor.GorScriptParser

ScriptContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.ScriptContext

securityContext(String) - Method in class org.gorpipe.gor.manager.TableManager.Builder

seek(String, int) - Method in class gorsat.BatchedPipeStepIteratorAdaptor

seek(String, int) - Method in class gorsat.BatchedReadSource

seek(String, int) - Method in class gorsat.process.NordIterator

seek(String, int) - Method in class gorsat.process.ProcessIteratorAdaptor

seek(String, int) - Method in class gorsat.process.ProcessRowSource

seekReplacement(String, String, int, int) - Static method in class gorsat.process.GorJavaUtilities

select(Path, String[], String[], String[], String[], String, boolean) - Method in class org.gorpipe.gor.manager.TableManager

Select entries from the table.

SELECT - Static variable in class org.gorpipe.gor.GorScriptLexer

SELECT - Static variable in class org.gorpipe.gor.GorScriptParser

SELECT() - Method in class org.gorpipe.gor.GorScriptParser.Select_commandContext

select_command() - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

select_command() - Method in class org.gorpipe.gor.GorScriptParser

Select_commandContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Select_commandContext

selectAll(Path) - Method in class org.gorpipe.gor.manager.TableManager

Select all entries from table.

self() - Method in class gorsat.parquet.GorParquetWriter.GorParquetBuilder

semanticCheck() - Method in class org.gorpipe.gor.GorScriptAnalyzer

SemanticChecker - Class in org.gorpipe.gor

SemanticChecker() - Constructor for class org.gorpipe.gor.SemanticChecker

session - Variable in class org.gorpipe.gor.RequestStats

SessionBasedQueryEvaluator - Class in gorsat.process

SessionBasedQueryEvaluator(GorSession) - Constructor for class gorsat.process.SessionBasedQueryEvaluator

SET - org.gorpipe.querydialogs.DialogType

A dialog representing a SDL set query

setAdvancedArgumentsVisible(boolean) - Method in class org.gorpipe.querydialogs.Dialog

setAF(double) - Method in class gorsat.gtgen.GTGen

Sets the allele frequency which we are assuming to have been used when computing the given triplets.

setAFsinglePriors(double, double) - Method in class gorsat.gtgen.GTGen

setArgument(String, Argument) - Method in class org.gorpipe.querydialogs.Dialog

setArgumentMap(Map<String, ? extends Object>) - Method in class org.gorpipe.querydialogs.factory.Perspective

Set the perspective argument map.

setArgumentValues(Path) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Read argument values from file and set.

setArgumentValues(Map<String, ArgumentContent>) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Set values for arguments.

setBaseChartColumns(String) - Method in class org.gorpipe.querydialogs.Dialog

setBaseChartDF(ChartDataType) - Method in class org.gorpipe.querydialogs.Dialog

setBaseChartExec(String) - Method in class org.gorpipe.querydialogs.Dialog

setBaseChartScript(String) - Method in class org.gorpipe.querydialogs.Dialog

setBaseQuery(String) - Method in class org.gorpipe.querydialogs.Dialog

setBucketDirs(List<Path>) - Method in class org.gorpipe.gor.manager.BucketManager

Set the bucket dir list.

setBucketSize(int) - Method in class org.gorpipe.gor.manager.BucketManager

setBucketSize(int) - Method in class org.gorpipe.gor.manager.TableManager

Set the bucket size.

setCancelMonitor(CancelMonitor) - Method in class org.gorpipe.gor.gava.VariantAssociation

setCollapseThreshold(int) - Method in class org.gorpipe.gor.gava.VariantAssociation

setColumnNamesAndTypes(String[], String[]) - Method in class gorsat.parser.CalcCompiler

setConfigFile(String) - Method in class gorsat.process.GenericSessionFactory

setCurrentChrom(String) - Method in class gorsat.BatchedPipeStepIteratorAdaptor

setCurrentColumn(int) - Method in class gorsat.parser.HeaderCVP

setData(double[][], int) - Method in class gorsat.Regression.LinearRegression

setData(List<String>, List<String[]>) - Method in class org.gorpipe.querydialogs.util.SubjectLists

Set data for lists other than default.

setDebug(boolean) - Method in class org.gorpipe.gor.gava.VariantAssociation

setDefaultListsData(List<String>, List<String[]>, String[]) - Method in class org.gorpipe.querydialogs.util.SubjectLists

Set data for default lists.

setDeferUpdates(boolean) - Method in class org.gorpipe.querydialogs.Dialog

Defer updates to interpolated query.

setDialogsFilePath(Path) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

setDisplayWidth(Integer) - Method in class org.gorpipe.querydialogs.Argument

Set the display width for argument.

setEx(Throwable) - Method in class gorsat.BatchedPipeStepIteratorAdaptor

setEx(Throwable) - Method in class gorsat.BatchedReadSource

setFormat(String) - Method in class org.gorpipe.querydialogs.argument.StringArgument

setHelpDefinition(FilteringColumnDefinition) - Method in class org.gorpipe.querydialogs.argument.StringArgument

Set help definition for argument.

setHtmlTemplate(String) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Deprecated.

Should define an html template for perspectives instead

setIgnoreAllowedMismatch(boolean) - Method in class org.gorpipe.querydialogs.factory.ArgumentBuilder

setIncludeProtective(boolean) - Method in class org.gorpipe.gor.gava.GavaLogLikelihood

Set if protective variants should be included (default is false).

setMax(Double) - Method in class org.gorpipe.querydialogs.argument.NumberArgument

setMaxTextFieldMinWidth(int) - Method in class org.gorpipe.querydialogs.argument.NumberArgument

Set the minium width of a text field for the argument maximum value.

setMin(Double) - Method in class org.gorpipe.querydialogs.argument.NumberArgument

setMinBucketSize(int) - Method in class org.gorpipe.gor.manager.BucketManager

setMinBucketSize(int) - Method in class org.gorpipe.gor.manager.TableManager

setMinTextFieldMinWidth(int) - Method in class org.gorpipe.querydialogs.argument.NumberArgument

Set the minium width of a text field for the argument minimum value.

setModel(boolean, boolean, int, int, boolean, double, boolean) - Method in class org.gorpipe.gor.gava.VariantAssociation

Set the disease model (inheritance and penetrance patterns).

setNextRowBuffer(RowBuffer) - Method in class gorsat.RowBuffer

setNumberValue(Number) - Method in class org.gorpipe.querydialogs.argument.NumberArgument

setNumRandomIterations(int, int) - Method in class org.gorpipe.gor.gava.VariantAssociation

setOperator(String) - Method in class org.gorpipe.querydialogs.Argument

setPenetrance(int, int, boolean) - Method in class org.gorpipe.gor.gava.GavaLogLikelihood

setPersistingValueObject(SubjectLists) - Method in class org.gorpipe.querydialogs.argument.StringArgument

Set the persisting value.

setPnLists(String[], String[]) - Method in class org.gorpipe.gor.gava.VariantAssociation

setPosition(String, int) - Method in class gorsat.process.BaseStreamIterator

setPrior(double, double, int) - Method in class gorsat.gtgen.GTGen

Indicates that our n samples are a part of a bigger cohort of m + n samples, and for the m ones, excluding ours, the estimated allele frequency is af.

setPrior(double, int) - Method in class gorsat.gtgen.GTGen

setRange(String, int, int) - Method in class gorsat.process.ProcessRowSource

setRange(String, int, int) - Method in class gorsat.process.ProcessSource

setReportViewer(ReportViewer) - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

setSecurityContext(String) - Method in class org.gorpipe.gor.manager.TableManager

setSubjectCounts(int, int) - Method in class org.gorpipe.gor.gava.GavaLogLikelihood

setType(DialogType) - Method in class org.gorpipe.querydialogs.Dialog

setUnknownAllele(byte) - Method in class org.gorpipe.gor.haplotype.GBasicRulesCalculator

Set the value for an unknown allele (default is Byte.MIN_VALUE) .

setup() - Method in class gorsat.external.plink.PlinkAdjustAdaptor

setup() - Method in class gorsat.external.plink.PlinkProcessAdaptor

setup() - Method in class gorsat.external.plink.PlinkVcfProcessAdaptor

setup() - Method in class gorsat.IOTestAnalyser

setup() - Method in class gorsat.parquet.GorParquetFileOut

setUpperFreqThreshold(double) - Method in class org.gorpipe.gor.gava.GavaLogLikelihood

setValue(Object) - Method in class org.gorpipe.querydialogs.argument.NumberArgument

setValue(Object) - Method in class org.gorpipe.querydialogs.Argument

setValue(Object, boolean) - Method in class org.gorpipe.querydialogs.Argument

setValueTextFieldMinWidth(int) - Method in class org.gorpipe.querydialogs.argument.NumberArgument

Set the minium width of a text field for the argument value.

sf - Variable in class gorsat.Regression.LogisticRegression

shortDescr - Variable in class org.gorpipe.querydialogs.ArgumentDescription

shortDescr - Variable in class org.gorpipe.querydialogs.DialogDescription

Dialog short description.

sidak_sd(double[], double[]) - Static method in class gorsat.process.StatisticalAdjustment

Runs a Sidak step down correction on an ordered vector of p values.

sidak_ss(double, int) - Static method in class gorsat.process.StatisticalAdjustment

sigmoid(double) - Method in class gorsat.Regression.SigmoidFunction

SigmoidFunction - Class in gorsat.Regression

A class which uses a lookup table to compute the sigmoid function x -> 1/(1 + e^(-x)) up to a precision of 10^(-10).

signed_factor() - Method in class org.gorpipe.gor.GorScriptParser.FactorContext

signed_factor() - Method in class org.gorpipe.gor.GorScriptParser

Signed_factorContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Signed_factorContext

SingleQuoteString - Static variable in class org.gorpipe.gor.GorScriptLexer

SingleQuoteString - Static variable in class org.gorpipe.gor.GorScriptParser

SingleQuoteString() - Method in class org.gorpipe.gor.GorScriptParser.String_literalContext

size() - Method in class gorsat.RowBuffer

SkipFirstMethodModel - Class in org.gorpipe.querydialogs.templating

Template model that enables template writer to skip first occurence of a given argument.

SkipFirstMethodModel() - Constructor for class org.gorpipe.querydialogs.templating.SkipFirstMethodModel

skipHeader() - Method in class gorsat.process.GorJavaUtilities.CmdParams

skipLines() - Method in class gorsat.process.GorJavaUtilities.CmdParams

SLIDER - Static variable in class org.gorpipe.querydialogs.ArgumentType

SLIDER_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

solveLower(double[][], double[], double[], int) - Static method in class gorsat.Regression.LinearAlgebra

Solves Lx = y and writes the result to x.

solveSymPosDef(double[][], double[], double[]) - Static method in class gorsat.Regression.LinearAlgebra

Solves Ax = b and writes the results to x.

solveUpper(double[][], double[], double[], int) - Static method in class gorsat.Regression.LinearAlgebra

Solves Ux = y and writes the result to x.

splitResourceHints(String, String) - Static method in class gorsat.process.GorJavaUtilities

StatisticalAdjustment - Class in gorsat.process

stats - Variable in class org.gorpipe.gor.RequestStats

statsAdded(String, StatsCollector) - Method in class org.gorpipe.gor.RequestStats

store(Path, String, String, long) - Method in class org.gorpipe.gor.clients.LocalFileCacheClient

storeFormat - Variable in enum org.gorpipe.querydialogs.factory.ArgumentContent.Format

Store format key.

storeSibling(Path, String) - Method in class org.gorpipe.gor.clients.LocalFileCacheClient

storeWithSpecificCacheFilename(Path, String, String, long) - Method in class org.gorpipe.gor.clients.LocalFileCacheClient

storingAllowed() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

stream() - Method in class org.gorpipe.gor.function.ListRowAdaptor

stream2RowList(Stream<Row>) - Static method in class gorsat.process.GorJavaUtilities

STRING - Static variable in class org.gorpipe.querydialogs.ArgumentType

string_literal() - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

string_literal() - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

string_literal() - Method in class org.gorpipe.gor.GorScriptParser

string_literal() - Method in class org.gorpipe.gor.GorScriptParser.String_literal_listContext

string_literal() - Method in class org.gorpipe.gor.GorScriptParser.ValueContext

string_literal(int) - Method in class org.gorpipe.gor.GorScriptParser.String_literal_listContext

string_literal_list() - Method in class org.gorpipe.gor.GorScriptParser.In_expressionContext

string_literal_list() - Method in class org.gorpipe.gor.GorScriptParser

String_literal_listContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.String_literal_listContext

String_literalContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.String_literalContext

STRING_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

StringArgument - Class in org.gorpipe.querydialogs.argument

Represents an argument that expects a string value.

StringArgument(StringArgument) - Constructor for class org.gorpipe.querydialogs.argument.StringArgument

StringArgument(ArgumentDescription, boolean, Boolean, Object, List<? extends Object>, URI, ValueFormatter, List<String>, Boolean, Integer, ArgumentType, Boolean) - Constructor for class org.gorpipe.querydialogs.argument.StringArgument

Constructor.

StringArgumentBuilder - Class in org.gorpipe.querydialogs.factory.builder

Responsible for building string arguments.

StringArgumentBuilder(FileReader) - Constructor for class org.gorpipe.querydialogs.factory.builder.StringArgumentBuilder

stringToValue(String) - Method in class org.gorpipe.querydialogs.RangedNumberFormatter

stringValue(int) - Method in class gorsat.parser.HeaderCVP

subCommandSplit(Path, String, List<String>) - Static method in class gorsat.process.ProcessIteratorAdaptor

SubjectLists - Class in org.gorpipe.querydialogs.util

Class holding information on lists and their content.

SubjectLists() - Constructor for class org.gorpipe.querydialogs.util.SubjectLists

Constructor.

SubjectLists(SubjectLists) - Constructor for class org.gorpipe.querydialogs.util.SubjectLists

Copy constructor.

subtract(double) - Method in class gorsat.parser.CalcLambdaBoolean

subtract(double) - Method in class gorsat.parser.CalcLambdaDouble

subtract(double) - Method in class gorsat.parser.CalcLambdaDoubleConstant

subtract(double) - Method in class gorsat.parser.CalcLambdaInteger

subtract(double) - Method in class gorsat.parser.CalcLambdaIntegerConstant

subtract(double) - Method in class gorsat.parser.CalcLambdaLong

subtract(double) - Method in class gorsat.parser.CalcLambdaLongConstant

subtract(double) - Method in class gorsat.parser.CalcLambdaString

subtract(double) - Method in class gorsat.parser.CalcLambdaStringConstant

subtract(double) - Method in class gorsat.parser.CalcLambdaVariable

subtract(double) - Method in interface gorsat.parser.TypedCalcLambda

subtract(int) - Method in class gorsat.parser.CalcLambdaBoolean

subtract(int) - Method in class gorsat.parser.CalcLambdaDouble

subtract(int) - Method in class gorsat.parser.CalcLambdaDoubleConstant

subtract(int) - Method in class gorsat.parser.CalcLambdaInteger

subtract(int) - Method in class gorsat.parser.CalcLambdaIntegerConstant

subtract(int) - Method in class gorsat.parser.CalcLambdaLong

subtract(int) - Method in class gorsat.parser.CalcLambdaLongConstant

subtract(int) - Method in class gorsat.parser.CalcLambdaString

subtract(int) - Method in class gorsat.parser.CalcLambdaStringConstant

subtract(int) - Method in class gorsat.parser.CalcLambdaVariable

subtract(int) - Method in interface gorsat.parser.TypedCalcLambda

subtract(long) - Method in class gorsat.parser.CalcLambdaBoolean

subtract(long) - Method in class gorsat.parser.CalcLambdaDouble

subtract(long) - Method in class gorsat.parser.CalcLambdaDoubleConstant

subtract(long) - Method in class gorsat.parser.CalcLambdaInteger

subtract(long) - Method in class gorsat.parser.CalcLambdaIntegerConstant

subtract(long) - Method in class gorsat.parser.CalcLambdaLong

subtract(long) - Method in class gorsat.parser.CalcLambdaLongConstant

subtract(long) - Method in class gorsat.parser.CalcLambdaString

subtract(long) - Method in class gorsat.parser.CalcLambdaStringConstant

subtract(long) - Method in class gorsat.parser.CalcLambdaVariable

subtract(long) - Method in interface gorsat.parser.TypedCalcLambda

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaBoolean

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaDouble

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaDoubleConstant

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaInteger

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaIntegerConstant

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaLong

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaLongConstant

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaString

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaStringConstant

subtract(CalcLambdaDouble) - Method in class gorsat.parser.CalcLambdaVariable

subtract(CalcLambdaDouble) - Method in interface gorsat.parser.TypedCalcLambda

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaBoolean

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaDouble

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaDoubleConstant

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaInteger

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaIntegerConstant

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaLong

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaLongConstant

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaString

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaStringConstant

subtract(CalcLambdaInteger) - Method in class gorsat.parser.CalcLambdaVariable

subtract(CalcLambdaInteger) - Method in interface gorsat.parser.TypedCalcLambda

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaBoolean

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaDouble

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaDoubleConstant

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaInteger

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaIntegerConstant

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaLong

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaLongConstant

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaString

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaStringConstant

subtract(CalcLambdaLong) - Method in class gorsat.parser.CalcLambdaVariable

subtract(CalcLambdaLong) - Method in interface gorsat.parser.TypedCalcLambda

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaBoolean

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaDouble

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaDoubleConstant

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaInteger

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaIntegerConstant

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaLong

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaLongConstant

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaString

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaStringConstant

subtract(CalcLambdaVariable) - Method in class gorsat.parser.CalcLambdaVariable

subtract(CalcLambdaVariable) - Method in interface gorsat.parser.TypedCalcLambda

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaBoolean

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDouble

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaDoubleConstant

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaInteger

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaIntegerConstant

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLong

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaLongConstant

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaString

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaStringConstant

subtractedFrom(TypedCalcLambda) - Method in class gorsat.parser.CalcLambdaVariable

subtractedFrom(TypedCalcLambda) - Method in interface gorsat.parser.TypedCalcLambda

sum(double[], int) - Static method in class gorsat.Regression.LinearAlgebra

Computes the sum of the elements of x with index < len.

sum(double[], int, int) - Static method in class gorsat.Regression.LinearAlgebra

Computes the sum the elements of x whose index is < upTo and ≥ offset.

SyntaxChecker - Class in org.gorpipe.gor

SyntaxChecker() - Constructor for class org.gorpipe.gor.SyntaxChecker

syntaxError(Recognizer<?, ?>, Object, int, int, String, RecognitionException) - Method in class org.gorpipe.gor.SyntaxChecker

T

T__0 - Static variable in class org.gorpipe.gor.GorScriptLexer

T__0 - Static variable in class org.gorpipe.gor.GorScriptParser

T__1 - Static variable in class org.gorpipe.gor.GorScriptLexer

T__1 - Static variable in class org.gorpipe.gor.GorScriptParser

T__2 - Static variable in class org.gorpipe.gor.GorScriptLexer

T__2 - Static variable in class org.gorpipe.gor.GorScriptParser

T__3 - Static variable in class org.gorpipe.gor.GorScriptLexer

T__3 - Static variable in class org.gorpipe.gor.GorScriptParser

T__4 - Static variable in class org.gorpipe.gor.GorScriptLexer

T__4 - Static variable in class org.gorpipe.gor.GorScriptParser

T__5 - Static variable in class org.gorpipe.gor.GorScriptLexer

T__5 - Static variable in class org.gorpipe.gor.GorScriptParser

TABLE - org.gorpipe.querydialogs.factory.Perspective.VIEW_TYPE

Data is displayed as a table.

TableManager - Class in org.gorpipe.gor.manager

Class to manage gor tables (dictionaries and tables).

TableManager() - Constructor for class org.gorpipe.gor.manager.TableManager

Default constructor.

TableManager.Builder - Class in org.gorpipe.gor.manager

tasks(Collection<GorScriptTask>) - Method in class org.gorpipe.gor.RequestStats

tempLocation(String, String) - Method in class org.gorpipe.gor.clients.LocalFileCacheClient

term() - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

term() - Method in class org.gorpipe.gor.GorScriptParser

term(int) - Method in class org.gorpipe.gor.GorScriptParser.ExpressionContext

TermContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.TermContext

test(T) - Method in class org.gorpipe.gor.function.GorRowFilterFunction

TIMES - Static variable in class org.gorpipe.gor.GorScriptLexer

TIMES - Static variable in class org.gorpipe.gor.GorScriptParser

TIMES() - Method in class org.gorpipe.gor.GorScriptParser.Column_wildcardContext

TIMES() - Method in class org.gorpipe.gor.GorScriptParser.TermContext

TIMES(int) - Method in class org.gorpipe.gor.GorScriptParser.TermContext

tokenNames - Static variable in class org.gorpipe.gor.GorScriptLexer

Deprecated.

Use GorScriptLexer.VOCABULARY instead.

tokenNames - Static variable in class org.gorpipe.gor.GorScriptParser

Deprecated.

Use GorScriptParser.VOCABULARY instead.

toLambda() - Method in class gorsat.parser.CalcLambdaVariable

toLambda() - Method in interface gorsat.parser.TypedCalcLambda

tooltip - Variable in class org.gorpipe.querydialogs.ArgumentDescription

toString() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

toString() - Method in class gorsat.external.plink.AdjustedGORLine

toString() - Method in class gorsat.external.plink.GORLine

toString() - Method in class gorsat.process.NordIteratorEntry

toString() - Method in class org.gorpipe.querydialogs.Argument

toString() - Method in class org.gorpipe.querydialogs.ArgumentType

toString() - Method in class org.gorpipe.querydialogs.Dialog

toString() - Method in class org.gorpipe.querydialogs.factory.ColumnGroup

toString() - Method in class org.gorpipe.querydialogs.factory.Perspective

toString() - Method in class org.gorpipe.querydialogs.util.SubjectLists

toUppercase(Collection<String>) - Static method in class gorsat.process.GorJavaUtilities

tripleDotProd(double[], double[], double[], int) - Static method in class gorsat.Regression.LinearAlgebra

Computes the triple dot product of the sub-vectors of x, y, z consisting of the elements whose index is < len.

tripleDotProd(double[], double[], double[], int, int) - Static method in class gorsat.Regression.LinearAlgebra

Computes the tripte dot product of the sub-vectors of x, y, z consisting of the elements whose index is < upTo and ≥ offset.

tryAdvance(Consumer<? super Row>) - Method in class gorsat.BatchedPipeStepIteratorAdaptor

trySplit() - Method in class gorsat.BatchedPipeStepIteratorAdaptor

tStats - Variable in class gorsat.Regression.LinearRegression

type - Variable in class org.gorpipe.querydialogs.Argument

TypedCalcLambda - Interface in gorsat.parser

U

unknown - Variable in class org.gorpipe.gor.haplotype.GBasicRulesCalculator

updateGradientAndHessian(double[][], boolean[]) - Method in class gorsat.Regression.LogisticRegression

updateGradientAndHessianFirstRun(double[][], boolean[]) - Method in class gorsat.Regression.LogisticRegression

updateTimeMeasurement(long, RowBuffer) - Method in class gorsat.BatchedPipeStepIteratorAdaptor

updateTimeMeasurement(long, RowBuffer) - Method in class gorsat.BatchedReadSource

upperFreqThreshold - Variable in class org.gorpipe.gor.gava.GavaLogLikelihood

Upper threshold for the control allele frequency.

useDefaultLists() - Method in class org.gorpipe.querydialogs.util.SubjectLists

Check if default lists should be used.

useHistory(boolean) - Method in class org.gorpipe.gor.manager.TableManager.Builder

useHttpServer() - Method in class gorsat.process.GorJavaUtilities.CmdParams

useProcessMethod() - Method in class gorsat.process.GorJavaUtilities.CmdParams

V

validate(String) - Method in class org.gorpipe.gor.SemanticChecker

validateFiles(boolean) - Method in class org.gorpipe.gor.manager.TableManager.Builder

value - Variable in class org.gorpipe.querydialogs.Argument

value - Variable in class org.gorpipe.querydialogs.factory.ArgumentContent

The value.

value() - Method in class org.gorpipe.gor.GorScriptParser

value() - Method in class org.gorpipe.gor.GorScriptParser.XfactorContext

VALUE_GRID - Static variable in class org.gorpipe.querydialogs.ArgumentType

VALUE_GRID_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

For selection from a value grid (based on class GridTableView).

ValueContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.ValueContext

valueFormat - Variable in enum org.gorpipe.querydialogs.factory.ArgumentContent.Format

Value format key.

ValueFormatter - Class in org.gorpipe.querydialogs.util

ValueFormatter(Map<Object, String>) - Constructor for class org.gorpipe.querydialogs.util.ValueFormatter

valueOf(String) - Static method in enum gorsat.process.GorJavaUtilities.Phenotypes

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.gorpipe.gor.manager.BucketManager.BucketPackLevel

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in class org.gorpipe.querydialogs.ArgumentType

valueOf(String) - Static method in enum org.gorpipe.querydialogs.ChartDataType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.gorpipe.querydialogs.DialogType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.gorpipe.querydialogs.factory.ArgumentContent.Format

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.gorpipe.querydialogs.factory.Perspective.VIEW_TYPE

Returns the enum constant of this type with the specified name.

values() - Static method in enum gorsat.process.GorJavaUtilities.Phenotypes

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.gorpipe.gor.manager.BucketManager.BucketPackLevel

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.gorpipe.querydialogs.ChartDataType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.gorpipe.querydialogs.DialogType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.gorpipe.querydialogs.factory.ArgumentContent.Format

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.gorpipe.querydialogs.factory.Perspective.VIEW_TYPE

Returns an array containing the constants of this enum type, in the order they are declared.

VALUES_FORMAT - Static variable in class org.gorpipe.querydialogs.util.ValueFormatter

valueToString(Object) - Method in class org.gorpipe.querydialogs.RangedNumberFormatter

variable() - Method in class org.gorpipe.gor.GorScriptParser.ValueContext

variable() - Method in class org.gorpipe.gor.GorScriptParser

VariableContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.VariableContext

VariantAssociation - Class in org.gorpipe.gor.gava

Variant association algorithm, based on the VAAST algorithm.

VariantAssociation() - Constructor for class org.gorpipe.gor.gava.VariantAssociation

Instantiate the class.

VariantCounts - Class in org.gorpipe.gor.gava

VariantCounts(int[], double, double) - Constructor for class org.gorpipe.gor.gava.VariantCounts

VCFValue(double) - Constructor for class gorsat.process.GorJavaUtilities.VCFValue

verify() - Method in class org.gorpipe.querydialogs.factory.PerspectiveDialog

Verify dialog by getting the error message.

verifyLinkFileLastModified(ProjectContext, String) - Static method in class gorsat.process.GorJavaUtilities

version - Variable in class org.gorpipe.querydialogs.Dialog

VIRTUAL_PN_FILE - Static variable in class org.gorpipe.querydialogs.ArgumentType

VIRTUAL_PN_FILE_ORDINAL - Static variable in class org.gorpipe.querydialogs.ArgumentType

virtual_relation() - Method in class org.gorpipe.gor.GorScriptParser.ArgumentContext

virtual_relation() - Method in class org.gorpipe.gor.GorScriptParser.Gor_expressionContext

virtual_relation() - Method in class org.gorpipe.gor.GorScriptParser.Indag_expressionContext

virtual_relation() - Method in class org.gorpipe.gor.GorScriptParser

virtual_relation_name() - Method in class org.gorpipe.gor.GorScriptParser.Create_statementContext

virtual_relation_name() - Method in class org.gorpipe.gor.GorScriptParser

Virtual_relation_nameContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Virtual_relation_nameContext

Virtual_relationContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Virtual_relationContext

visitArgument(GorScriptParser.ArgumentContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.argument().

visitArgument(GorScriptParser.ArgumentContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.argument().

visitCalc_command(GorScriptParser.Calc_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.calc_command().

visitCalc_command(GorScriptParser.Calc_commandContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.calc_command().

visitCalc_expression(GorScriptParser.Calc_expressionContext) - Method in class gorsat.parser.CalcCompiler

visitCalc_expression(GorScriptParser.Calc_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.calc_expression().

visitCalc_expression(GorScriptParser.Calc_expressionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.calc_expression().

visitCalc_expression_list(GorScriptParser.Calc_expression_listContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.calc_expression_list().

visitCalc_expression_list(GorScriptParser.Calc_expression_listContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.calc_expression_list().

visitColumn_list(GorScriptParser.Column_listContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.column_list().

visitColumn_list(GorScriptParser.Column_listContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.column_list().

visitColumn_name(GorScriptParser.Column_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.column_name().

visitColumn_name(GorScriptParser.Column_nameContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.column_name().

visitColumn_number(GorScriptParser.Column_numberContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.column_number().

visitColumn_number(GorScriptParser.Column_numberContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.column_number().

visitColumn_range(GorScriptParser.Column_rangeContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.column_range().

visitColumn_range(GorScriptParser.Column_rangeContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.column_range().

visitColumn_ref(GorScriptParser.Column_refContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.column_ref().

visitColumn_ref(GorScriptParser.Column_refContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.column_ref().

visitColumn_rename_rule(GorScriptParser.Column_rename_ruleContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.column_rename_rule().

visitColumn_rename_rule(GorScriptParser.Column_rename_ruleContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.column_rename_rule().

visitColumn_selection(GorScriptParser.Column_selectionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.column_selection().

visitColumn_selection(GorScriptParser.Column_selectionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.column_selection().

visitColumn_wildcard(GorScriptParser.Column_wildcardContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.column_wildcard().

visitColumn_wildcard(GorScriptParser.Column_wildcardContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.column_wildcard().

visitCompare_expressions(GorScriptParser.Compare_expressionsContext) - Method in class gorsat.parser.CalcCompiler

visitCompare_expressions(GorScriptParser.Compare_expressionsContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.compare_expressions().

visitCompare_expressions(GorScriptParser.Compare_expressionsContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.compare_expressions().

visitCreate_statement(GorScriptParser.Create_statementContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.create_statement().

visitCreate_statement(GorScriptParser.Create_statementContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.create_statement().

visitDef_macro(GorScriptParser.Def_macroContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.def_macro().

visitDef_macro(GorScriptParser.Def_macroContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.def_macro().

visitErrorNode(ErrorNode) - Method in class org.gorpipe.gor.GorScriptBaseListener

visitExpression(GorScriptParser.ExpressionContext) - Method in class gorsat.parser.CalcCompiler

visitExpression(GorScriptParser.ExpressionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.expression().

visitExpression(GorScriptParser.ExpressionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.expression().

visitFactor(GorScriptParser.FactorContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.factor().

visitFactor(GorScriptParser.FactorContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.factor().

visitFilename(GorScriptParser.FilenameContext) - Method in class gorsat.parser.CalcCompiler

visitFilename(GorScriptParser.FilenameContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.filename().

visitFilename(GorScriptParser.FilenameContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.filename().

visitFunction_call(GorScriptParser.Function_callContext) - Method in class gorsat.parser.CalcCompiler

visitFunction_call(GorScriptParser.Function_callContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.function_call().

visitFunction_call(GorScriptParser.Function_callContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.function_call().

visitFunction_expr(GorScriptParser.Function_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.function_expr().

visitFunction_expr(GorScriptParser.Function_exprContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.function_expr().

visitFunction_name(GorScriptParser.Function_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.function_name().

visitFunction_name(GorScriptParser.Function_nameContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.function_name().

visitGeneric_command(GorScriptParser.Generic_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.generic_command().

visitGeneric_command(GorScriptParser.Generic_commandContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.generic_command().

visitGeneric_command(GorScriptParser.Generic_commandContext) - Method in class org.gorpipe.gor.SemanticChecker

visitGor_expression(GorScriptParser.Gor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.gor_expression().

visitGor_expression(GorScriptParser.Gor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.gor_expression().

visitGornor_expression(GorScriptParser.Gornor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.gornor_expression().

visitGornor_expression(GorScriptParser.Gornor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.gornor_expression().

visitHide_command(GorScriptParser.Hide_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.hide_command().

visitHide_command(GorScriptParser.Hide_commandContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.hide_command().

visitIf_expr(GorScriptParser.If_exprContext) - Method in class gorsat.parser.CalcCompiler

visitIf_expr(GorScriptParser.If_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.if_expr().

visitIf_expr(GorScriptParser.If_exprContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.if_expr().

visitIn_expression(GorScriptParser.In_expressionContext) - Method in class gorsat.parser.CalcCompiler

visitIn_expression(GorScriptParser.In_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.in_expression().

visitIn_expression(GorScriptParser.In_expressionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.in_expression().

visitIndag_expression(GorScriptParser.Indag_expressionContext) - Method in class gorsat.parser.CalcCompiler

visitIndag_expression(GorScriptParser.Indag_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.indag_expression().

visitIndag_expression(GorScriptParser.Indag_expressionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.indag_expression().

visitInput_source(GorScriptParser.Input_sourceContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.input_source().

visitInput_source(GorScriptParser.Input_sourceContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.input_source().

visitMacro_name(GorScriptParser.Macro_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.macro_name().

visitMacro_name(GorScriptParser.Macro_nameContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.macro_name().

visitMacro_value(GorScriptParser.Macro_valueContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.macro_value().

visitMacro_value(GorScriptParser.Macro_valueContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.macro_value().

visitNested_query(GorScriptParser.Nested_queryContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.nested_query().

visitNested_query(GorScriptParser.Nested_queryContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.nested_query().

visitNor_expression(GorScriptParser.Nor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.nor_expression().

visitNor_expression(GorScriptParser.Nor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.nor_expression().

visitNot_rel_expr(GorScriptParser.Not_rel_exprContext) - Method in class gorsat.parser.CalcCompiler

visitNot_rel_expr(GorScriptParser.Not_rel_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.not_rel_expr().

visitNot_rel_expr(GorScriptParser.Not_rel_exprContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.not_rel_expr().

visitNumber(GorScriptParser.NumberContext) - Method in class gorsat.parser.CalcCompiler

visitNumber(GorScriptParser.NumberContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.number().

visitNumber(GorScriptParser.NumberContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.number().

visitOption(GorScriptParser.OptionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.option().

visitOption(GorScriptParser.OptionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.option().

visitOption_value(GorScriptParser.Option_valueContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.option_value().

visitOption_value(GorScriptParser.Option_valueContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.option_value().

visitOptional_power_factor(GorScriptParser.Optional_power_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.optional_power_factor().

visitOptional_power_factor(GorScriptParser.Optional_power_factorContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.optional_power_factor().

visitOptions_and_args(GorScriptParser.Options_and_argsContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.options_and_args().

visitOptions_and_args(GorScriptParser.Options_and_argsContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.options_and_args().

visitParen_expr(GorScriptParser.Paren_exprContext) - Method in class gorsat.parser.CalcCompiler

visitParen_expr(GorScriptParser.Paren_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.paren_expr().

visitParen_expr(GorScriptParser.Paren_exprContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.paren_expr().

visitParen_rel_expr(GorScriptParser.Paren_rel_exprContext) - Method in class gorsat.parser.CalcCompiler

visitParen_rel_expr(GorScriptParser.Paren_rel_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.paren_rel_expr().

visitParen_rel_expr(GorScriptParser.Paren_rel_exprContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.paren_rel_expr().

visitPgor_expression(GorScriptParser.Pgor_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.pgor_expression().

visitPgor_expression(GorScriptParser.Pgor_expressionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.pgor_expression().

visitPipe_command(GorScriptParser.Pipe_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.pipe_command().

visitPipe_command(GorScriptParser.Pipe_commandContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.pipe_command().

visitPower_factor(GorScriptParser.Power_factorContext) - Method in class gorsat.parser.CalcCompiler

visitPower_factor(GorScriptParser.Power_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.power_factor().

visitPower_factor(GorScriptParser.Power_factorContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.power_factor().

visitPredicate(GorScriptParser.PredicateContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.predicate().

visitPredicate(GorScriptParser.PredicateContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.predicate().

visitPredicate_factor(GorScriptParser.Predicate_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.predicate_factor().

visitPredicate_factor(GorScriptParser.Predicate_factorContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.predicate_factor().

visitQuery_expression(GorScriptParser.Query_expressionContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.query_expression().

visitQuery_expression(GorScriptParser.Query_expressionContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.query_expression().

visitRel_expr(GorScriptParser.Rel_exprContext) - Method in class gorsat.parser.CalcCompiler

visitRel_expr(GorScriptParser.Rel_exprContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.rel_expr().

visitRel_expr(GorScriptParser.Rel_exprContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.rel_expr().

visitRel_term(GorScriptParser.Rel_termContext) - Method in class gorsat.parser.CalcCompiler

visitRel_term(GorScriptParser.Rel_termContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.rel_term().

visitRel_term(GorScriptParser.Rel_termContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.rel_term().

visitRename_command(GorScriptParser.Rename_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.rename_command().

visitRename_command(GorScriptParser.Rename_commandContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.rename_command().

visitReplace_command(GorScriptParser.Replace_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.replace_command().

visitReplace_command(GorScriptParser.Replace_commandContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.replace_command().

visitScript(GorScriptParser.ScriptContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.script().

visitScript(GorScriptParser.ScriptContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.script().

visitSelect_command(GorScriptParser.Select_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.select_command().

visitSelect_command(GorScriptParser.Select_commandContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.select_command().

visitSigned_factor(GorScriptParser.Signed_factorContext) - Method in class gorsat.parser.CalcCompiler

visitSigned_factor(GorScriptParser.Signed_factorContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.signed_factor().

visitSigned_factor(GorScriptParser.Signed_factorContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.signed_factor().

visitString_literal(GorScriptParser.String_literalContext) - Method in class gorsat.parser.CalcCompiler

visitString_literal(GorScriptParser.String_literalContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.string_literal().

visitString_literal(GorScriptParser.String_literalContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.string_literal().

visitString_literal_list(GorScriptParser.String_literal_listContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.string_literal_list().

visitString_literal_list(GorScriptParser.String_literal_listContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.string_literal_list().

visitTerm(GorScriptParser.TermContext) - Method in class gorsat.parser.CalcCompiler

visitTerm(GorScriptParser.TermContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.term().

visitTerm(GorScriptParser.TermContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.term().

visitTerminal(TerminalNode) - Method in class org.gorpipe.gor.GorScriptBaseListener

visitValue(GorScriptParser.ValueContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.value().

visitValue(GorScriptParser.ValueContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.value().

visitVariable(GorScriptParser.VariableContext) - Method in class gorsat.parser.CalcCompiler

visitVariable(GorScriptParser.VariableContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.variable().

visitVariable(GorScriptParser.VariableContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.variable().

visitVirtual_relation(GorScriptParser.Virtual_relationContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.virtual_relation().

visitVirtual_relation(GorScriptParser.Virtual_relationContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.virtual_relation().

visitVirtual_relation(GorScriptParser.Virtual_relationContext) - Method in class org.gorpipe.gor.SemanticChecker

visitVirtual_relation_name(GorScriptParser.Virtual_relation_nameContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.virtual_relation_name().

visitVirtual_relation_name(GorScriptParser.Virtual_relation_nameContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.virtual_relation_name().

visitVirtual_relation_name(GorScriptParser.Virtual_relation_nameContext) - Method in class org.gorpipe.gor.SemanticChecker

visitWhere_command(GorScriptParser.Where_commandContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.where_command().

visitWhere_command(GorScriptParser.Where_commandContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.where_command().

visitXfactor(GorScriptParser.XfactorContext) - Method in class org.gorpipe.gor.GorScriptBaseVisitor

Visit a parse tree produced by GorScriptParser.xfactor().

visitXfactor(GorScriptParser.XfactorContext) - Method in interface org.gorpipe.gor.GorScriptVisitor

Visit a parse tree produced by GorScriptParser.xfactor().

VOCABULARY - Static variable in class org.gorpipe.gor.GorScriptLexer

VOCABULARY - Static variable in class org.gorpipe.gor.GorScriptParser

W

WHERE - Static variable in class org.gorpipe.gor.GorScriptLexer

WHERE - Static variable in class org.gorpipe.gor.GorScriptParser

WHERE() - Method in class org.gorpipe.gor.GorScriptParser.Where_commandContext

where_command() - Method in class org.gorpipe.gor.GorScriptParser.Pipe_commandContext

where_command() - Method in class org.gorpipe.gor.GorScriptParser

Where_commandContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.Where_commandContext

wrapObjectArrayIterator(Iterator<Object[]>) - Static method in class gorsat.process.GorJavaUtilities

Helper method for wrapping Object[] iterator to Stream.

write(Row) - Method in class gorsat.parquet.GorParquetWriteSupport

writeDictionaryFromMeta(Path, Path) - Static method in class gorsat.process.GorJavaUtilities

writePath - Variable in class org.gorpipe.querydialogs.factory.PerspectiveDialog

WS - Static variable in class org.gorpipe.gor.GorScriptLexer

WS - Static variable in class org.gorpipe.gor.GorScriptParser

X

xfactor() - Method in class org.gorpipe.gor.GorScriptParser.FactorContext

xfactor() - Method in class org.gorpipe.gor.GorScriptParser.Signed_factorContext

xfactor() - Method in class org.gorpipe.gor.GorScriptParser

XfactorContext(ParserRuleContext, int) - Constructor for class org.gorpipe.gor.GorScriptParser.XfactorContext

Z

zStats - Variable in class gorsat.Regression.LogisticRegression

_

_ATN - Static variable in class org.gorpipe.gor.GorScriptLexer

_ATN - Static variable in class org.gorpipe.gor.GorScriptParser

_decisionToDFA - Static variable in class org.gorpipe.gor.GorScriptLexer

_decisionToDFA - Static variable in class org.gorpipe.gor.GorScriptParser

_serializedATN - Static variable in class org.gorpipe.gor.GorScriptLexer

_serializedATN - Static variable in class org.gorpipe.gor.GorScriptParser

_sharedContextCache - Static variable in class org.gorpipe.gor.GorScriptLexer

_sharedContextCache - Static variable in class org.gorpipe.gor.GorScriptParser

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