| CombinationIterator |
Iterate through all combinations (n choose k) and provide permutations representing the combinations.
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| DominantLogLikelihood |
Log likelihood calculator for dominant variant association.
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| GavaLogLikelihood |
Log-likelihood ratio calculator for variant association.
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| MathArrayUtils |
Provides various useful functions on arrays.
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| RecessiveLogLikelihood |
Log likelihood calculator for recessive variant association.
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| RegularLogLikelihood |
Log likelihood calculator for regular variant association.
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| VariantAssociation |
Variant association algorithm, based on the VAAST algorithm.
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| VariantCounts |
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