Package gorsat.process

Class ProcessSource

  • All Implemented Interfaces:
    java.lang.AutoCloseable, java.util.Iterator<org.gorpipe.gor.model.Row>
    Direct Known Subclasses:
    ProcessRowSource
    public abstract class ProcessSource
extends org.gorpipe.model.gor.iterators.RowSource
    Created by sigmar on 12/02/16.

    • Nested Class Summary

      • Nested classes/interfaces inherited from class org.gorpipe.gor.model.GenomicIterator

        org.gorpipe.gor.model.GenomicIterator.ChromoLookup

    • Constructor Summary

      Constructors 
      Constructor Description
      ProcessSource()  

    • Method Summary

      All Methods Instance Methods Abstract Methods 
      Modifier and Type Method Description
      abstract java.io.InputStream setRange​(java.lang.String seekChr, int seekPos, int endPos)  

      • Methods inherited from class org.gorpipe.model.gor.iterators.RowSource

        bufferSize, bufferSize_$eq, close, getAvgBasesPerMilliSecond, getAvgBatchSize, getAvgRowsPerMilliSecond, getAvgSeekTimeMilliSecond, getBufferSize, getCurrentBatchLoc, getCurrentBatchRow, getCurrentBatchSize, getGorHeader, getParent, moveToPosition, moveToPosition$default$3, next, parent, parent_$eq, seek, setBufferSize, setParent, setPosition, terminateReading

      • Methods inherited from class org.gorpipe.gor.model.GenomicIterator

        clone, decStat, filter, getColnum, getContext, getEx, getHeader, getLookup, getMonitor, getSourceName, hasNext, incStat, init, initStats, isBuffered, isSourceAlreadyInserted, next, pushdownCalc, pushdownCmd, pushdownFilter, pushdownGor, pushdownSelect, pushdownTop, pushdownWrite, seek, select, selectHeader, setColnum, setContext, setEx, setHeader, setSourceAlreadyInserted, setSourceName

      • Methods inherited from class java.lang.Object

        equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

      • Methods inherited from interface java.util.Iterator

        forEachRemaining, remove

    • Constructor Detail

      • ProcessSource

        public ProcessSource()

    • Method Detail

      • setRange

        public abstract java.io.InputStream setRange​(java.lang.String seekChr,
                                             int seekPos,
                                             int endPos)