Package gorsat.process

Class ProcessSource

java.lang.Object
org.gorpipe.gor.model.GenomicIteratorBase
gorsat.process.ProcessSource
All Implemented Interfaces:
AutoCloseable, Iterator<org.gorpipe.gor.model.Row>, org.gorpipe.gor.model.GenomicIterator, org.gorpipe.gor.model.RowSourceStats
Direct Known Subclasses:
ProcessRowSource
public abstract class ProcessSource extends org.gorpipe.gor.model.GenomicIteratorBase
Created by sigmar on 12/02/16.

  • Field Summary

    Fields inherited from class org.gorpipe.gor.model.GenomicIteratorBase

    statsSenderAnnotation, statsSenderName

  • Constructor Summary

    Constructors
    Constructor
    Description
    ProcessSource()
     

  • Method Summary

    Modifier and Type
    Method
    Description
    abstract InputStream
    setRange(String seekChr, int seekPos, int endPos)
     

    Methods inherited from class org.gorpipe.gor.model.GenomicIteratorBase

    clone, decStat, getBufferSize, getContext, getHeader, getSourceName, getTypes, incStat, init, initStats, isSourceAlreadyInserted, setBufferSize, setContext, setHeader, setSourceAlreadyInserted, setSourceName, setTypes

    Methods inherited from class java.lang.Object

    equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    Methods inherited from interface org.gorpipe.gor.model.GenomicIterator

    close, filter, getMonitor, isBuffered, moveToPosition, moveToPosition, pushdownCalc, pushdownCmd, pushdownFilter, pushdownGor, pushdownSelect, pushdownTop, pushdownWrite, seek, seek, select, setRequestedRange

    Methods inherited from interface java.util.Iterator

    forEachRemaining, hasNext, next, remove

    Methods inherited from interface org.gorpipe.gor.model.RowSourceStats

    getAvgBasesPerMilliSecond, getAvgBatchSize, getAvgRowsPerMilliSecond, getAvgSeekTimeMilliSecond, getCurrentBatchLoc, getCurrentBatchRow, getCurrentBatchSize

  • Constructor Details

    • ProcessSource

      public ProcessSource()

  • Method Details

    • setRange

      public abstract InputStream setRange(String seekChr, int seekPos, int endPos)