Package org.intermine.model.bio

Class OntologyTermShadow

java.lang.Object

org.intermine.model.bio.OntologyTermShadow

All Implemented Interfaces:

OntologyTerm, org.intermine.model.FastPathObject, org.intermine.model.InterMineFastPathObject, org.intermine.model.InterMineObject, org.intermine.model.ShadowClass

public class OntologyTermShadow
extends java.lang.Object
implements OntologyTerm, org.intermine.model.ShadowClass

Field Summary

Fields

Modifier and Type	Field	Description
protected java.util.Set<OntologyTerm>	crossReferences
protected java.util.Set<DataSet>	dataSets
protected java.lang.String	description
protected java.lang.Integer	id
protected java.lang.String	identifier
protected java.lang.String	name
protected java.lang.String	namespace
protected java.lang.Boolean	obsolete
protected org.intermine.model.InterMineObject	ontology
protected java.util.Set<OntologyAnnotation>	ontologyAnnotations
protected java.util.Set<OntologyTerm>	parents
protected java.util.Set<OntologyRelation>	relations
static java.lang.Class<OntologyTerm>	shadowOf
protected java.util.Set<OntologyTermSynonym>	synonyms

Constructor Summary

Constructors

Constructor	Description
OntologyTermShadow()

Method Summary

Modifier and Type	Method	Description
void	addCollectionElement(java.lang.String fieldName, org.intermine.model.InterMineObject element)
void	addCrossReferences(OntologyTerm arg)
void	addDataSets(DataSet arg)
void	addOntologyAnnotations(OntologyAnnotation arg)
void	addParents(OntologyTerm arg)
void	addRelations(OntologyRelation arg)
void	addSynonyms(OntologyTermSynonym arg)
boolean	equals(java.lang.Object o)
java.util.Set<OntologyTerm>	getCrossReferences()
java.util.Set<DataSet>	getDataSets()
java.lang.String	getDescription()
java.lang.Class<?>	getElementType(java.lang.String fieldName)
java.lang.Object	getFieldProxy(java.lang.String fieldName)
java.lang.Class<?>	getFieldType(java.lang.String fieldName)
java.lang.Object	getFieldValue(java.lang.String fieldName)
java.lang.Integer	getId()
java.lang.String	getIdentifier()
java.lang.String	getName()
java.lang.String	getNamespace()
org.intermine.model.StringConstructor	getoBJECT()
java.lang.Boolean	getObsolete()
Ontology	getOntology()
java.util.Set<OntologyAnnotation>	getOntologyAnnotations()
java.util.Set<OntologyTerm>	getParents()
java.util.Set<OntologyRelation>	getRelations()
java.util.Set<OntologyTermSynonym>	getSynonyms()
int	hashCode()
org.intermine.model.InterMineObject	proxGetOntology()
void	proxyOntology(org.intermine.objectstore.proxy.ProxyReference ontology)
void	setCrossReferences(java.util.Set<OntologyTerm> crossReferences)
void	setDataSets(java.util.Set<DataSet> dataSets)
void	setDescription(java.lang.String description)
void	setFieldValue(java.lang.String fieldName, java.lang.Object value)
void	setId(java.lang.Integer id)
void	setIdentifier(java.lang.String identifier)
void	setName(java.lang.String name)
void	setNamespace(java.lang.String namespace)
void	setoBJECT(java.lang.String[] notXml, org.intermine.objectstore.ObjectStore os)
void	setoBJECT(java.lang.String notXml, org.intermine.objectstore.ObjectStore os)
void	setObsolete(java.lang.Boolean obsolete)
void	setOntology(Ontology ontology)
void	setOntologyAnnotations(java.util.Set<OntologyAnnotation> ontologyAnnotations)
void	setParents(java.util.Set<OntologyTerm> parents)
void	setRelations(java.util.Set<OntologyRelation> relations)
void	setSynonyms(java.util.Set<OntologyTermSynonym> synonyms)
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

shadowOf

public static final java.lang.Class<OntologyTerm> shadowOf

identifier

protected java.lang.String identifier

description

protected java.lang.String description

obsolete

protected java.lang.Boolean obsolete

name

protected java.lang.String name

namespace

protected java.lang.String namespace

ontology

protected org.intermine.model.InterMineObject ontology

relations

protected java.util.Set<OntologyRelation> relations

synonyms

protected java.util.Set<OntologyTermSynonym> synonyms

ontologyAnnotations

protected java.util.Set<OntologyAnnotation> ontologyAnnotations

parents

protected java.util.Set<OntologyTerm> parents

dataSets

protected java.util.Set<DataSet> dataSets

crossReferences

protected java.util.Set<OntologyTerm> crossReferences

id

protected java.lang.Integer id

Constructor Detail

OntologyTermShadow

public OntologyTermShadow()

Method Detail

getIdentifier

public java.lang.String getIdentifier()

Specified by:

getIdentifier in interface OntologyTerm

setIdentifier

public void setIdentifier(java.lang.String identifier)

Specified by:

setIdentifier in interface OntologyTerm

getDescription

public java.lang.String getDescription()

Specified by:

getDescription in interface OntologyTerm

setDescription

public void setDescription(java.lang.String description)

Specified by:

setDescription in interface OntologyTerm

getObsolete

public java.lang.Boolean getObsolete()

Specified by:

getObsolete in interface OntologyTerm

setObsolete

public void setObsolete(java.lang.Boolean obsolete)

Specified by:

setObsolete in interface OntologyTerm

getName

public java.lang.String getName()

Specified by:

getName in interface OntologyTerm

setName

public void setName(java.lang.String name)

Specified by:

setName in interface OntologyTerm

getNamespace

public java.lang.String getNamespace()

Specified by:

getNamespace in interface OntologyTerm

setNamespace

public void setNamespace(java.lang.String namespace)

Specified by:

setNamespace in interface OntologyTerm

getOntology

public Ontology getOntology()

Specified by:

getOntology in interface OntologyTerm

setOntology

public void setOntology(Ontology ontology)

Specified by:

setOntology in interface OntologyTerm

proxyOntology

public void proxyOntology(org.intermine.objectstore.proxy.ProxyReference ontology)

Specified by:

proxyOntology in interface OntologyTerm

proxGetOntology

public org.intermine.model.InterMineObject proxGetOntology()

Specified by:

proxGetOntology in interface OntologyTerm

getRelations

public java.util.Set<OntologyRelation> getRelations()

Specified by:

getRelations in interface OntologyTerm

setRelations

public void setRelations(java.util.Set<OntologyRelation> relations)

Specified by:

setRelations in interface OntologyTerm

addRelations

public void addRelations(OntologyRelation arg)

Specified by:

addRelations in interface OntologyTerm

getSynonyms

public java.util.Set<OntologyTermSynonym> getSynonyms()

Specified by:

getSynonyms in interface OntologyTerm

setSynonyms

public void setSynonyms(java.util.Set<OntologyTermSynonym> synonyms)

Specified by:

setSynonyms in interface OntologyTerm

addSynonyms

public void addSynonyms(OntologyTermSynonym arg)

Specified by:

addSynonyms in interface OntologyTerm

getOntologyAnnotations

public java.util.Set<OntologyAnnotation> getOntologyAnnotations()

Specified by:

getOntologyAnnotations in interface OntologyTerm

setOntologyAnnotations

public void setOntologyAnnotations(java.util.Set<OntologyAnnotation> ontologyAnnotations)

Specified by:

setOntologyAnnotations in interface OntologyTerm

addOntologyAnnotations

public void addOntologyAnnotations(OntologyAnnotation arg)

Specified by:

addOntologyAnnotations in interface OntologyTerm

getParents

public java.util.Set<OntologyTerm> getParents()

Specified by:

getParents in interface OntologyTerm

setParents

public void setParents(java.util.Set<OntologyTerm> parents)

Specified by:

setParents in interface OntologyTerm

addParents

public void addParents(OntologyTerm arg)

Specified by:

addParents in interface OntologyTerm

getDataSets

public java.util.Set<DataSet> getDataSets()

Specified by:

getDataSets in interface OntologyTerm

setDataSets

public void setDataSets(java.util.Set<DataSet> dataSets)

Specified by:

setDataSets in interface OntologyTerm

addDataSets

public void addDataSets(DataSet arg)

Specified by:

addDataSets in interface OntologyTerm

getCrossReferences

public java.util.Set<OntologyTerm> getCrossReferences()

Specified by:

getCrossReferences in interface OntologyTerm

setCrossReferences

public void setCrossReferences(java.util.Set<OntologyTerm> crossReferences)

Specified by:

setCrossReferences in interface OntologyTerm

addCrossReferences

public void addCrossReferences(OntologyTerm arg)

Specified by:

addCrossReferences in interface OntologyTerm

getId

public java.lang.Integer getId()

Specified by:

getId in interface org.intermine.model.InterMineFastPathObject

Specified by:

getId in interface org.intermine.model.InterMineObject

setId

public void setId(java.lang.Integer id)

Specified by:

setId in interface org.intermine.model.InterMineFastPathObject

Specified by:

setId in interface org.intermine.model.InterMineObject

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

getFieldValue

public java.lang.Object getFieldValue(java.lang.String fieldName)
                               throws java.lang.IllegalAccessException

Specified by:

getFieldValue in interface org.intermine.model.FastPathObject

Throws:

java.lang.IllegalAccessException

getFieldProxy

public java.lang.Object getFieldProxy(java.lang.String fieldName)
                               throws java.lang.IllegalAccessException

Specified by:

getFieldProxy in interface org.intermine.model.FastPathObject

Throws:

java.lang.IllegalAccessException

setFieldValue

public void setFieldValue(java.lang.String fieldName,
                          java.lang.Object value)

Specified by:

setFieldValue in interface org.intermine.model.FastPathObject

getFieldType

public java.lang.Class<?> getFieldType(java.lang.String fieldName)

Specified by:

getFieldType in interface org.intermine.model.FastPathObject

getoBJECT

public org.intermine.model.StringConstructor getoBJECT()

Specified by:

getoBJECT in interface org.intermine.model.InterMineFastPathObject

Specified by:

getoBJECT in interface org.intermine.model.InterMineObject

setoBJECT

public void setoBJECT(java.lang.String notXml,
                      org.intermine.objectstore.ObjectStore os)

Specified by:

setoBJECT in interface org.intermine.model.InterMineObject

setoBJECT

public void setoBJECT(java.lang.String[] notXml,
                      org.intermine.objectstore.ObjectStore os)

Specified by:

setoBJECT in interface org.intermine.model.InterMineObject

addCollectionElement

public void addCollectionElement(java.lang.String fieldName,
                                 org.intermine.model.InterMineObject element)

getElementType

public java.lang.Class<?> getElementType(java.lang.String fieldName)

Specified by:

getElementType in interface org.intermine.model.InterMineFastPathObject

Specified by:

getElementType in interface org.intermine.model.InterMineObject