Package org.intermine.model.bio

Class SequenceShadow

  • All Implemented Interfaces:
    Sequence, org.intermine.model.FastPathObject, org.intermine.model.InterMineFastPathObject, org.intermine.model.InterMineObject, org.intermine.model.ShadowClass
    public class SequenceShadow
extends java.lang.Object
implements Sequence, org.intermine.model.ShadowClass

    • Field Summary

      Fields 
      Modifier and Type Field Description
      protected java.lang.Integer id  
      protected int length  
      protected java.lang.String md5checksum  
      protected org.intermine.objectstore.query.ClobAccess residues  
      static java.lang.Class<Sequence> shadowOf  

    • Constructor Summary

      Constructors 
      Constructor Description
      SequenceShadow()  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void addCollectionElement​(java.lang.String fieldName, org.intermine.model.InterMineObject element)  
      boolean equals​(java.lang.Object o)  
      java.lang.Class<?> getElementType​(java.lang.String fieldName)  
      java.lang.Object getFieldProxy​(java.lang.String fieldName)  
      java.lang.Class<?> getFieldType​(java.lang.String fieldName)  
      java.lang.Object getFieldValue​(java.lang.String fieldName)  
      java.lang.Integer getId()  
      int getLength()  
      java.lang.String getMd5checksum()  
      org.intermine.model.StringConstructor getoBJECT()  
      org.intermine.objectstore.query.ClobAccess getResidues()  
      int hashCode()  
      void setFieldValue​(java.lang.String fieldName, java.lang.Object value)  
      void setId​(java.lang.Integer id)  
      void setLength​(int length)  
      void setMd5checksum​(java.lang.String md5checksum)  
      void setoBJECT​(java.lang.String[] notXml, org.intermine.objectstore.ObjectStore os)  
      void setoBJECT​(java.lang.String notXml, org.intermine.objectstore.ObjectStore os)  
      void setResidues​(org.intermine.objectstore.query.ClobAccess residues)  
      java.lang.String toString()  

      • Methods inherited from class java.lang.Object

        clone, finalize, getClass, notify, notifyAll, wait, wait, wait

    • Field Detail

      • shadowOf

        public static final java.lang.Class<Sequence> shadowOf

      • md5checksum

        protected java.lang.String md5checksum

      • residues

        protected org.intermine.objectstore.query.ClobAccess residues

      • length

        protected int length

      • id

        protected java.lang.Integer id

    • Constructor Detail

      • SequenceShadow

        public SequenceShadow()

    • Method Detail

      • getMd5checksum

        public java.lang.String getMd5checksum()
        Specified by:
        getMd5checksum in interface Sequence

      • setMd5checksum

        public void setMd5checksum​(java.lang.String md5checksum)
        Specified by:
        setMd5checksum in interface Sequence

      • getResidues

        public org.intermine.objectstore.query.ClobAccess getResidues()
        Specified by:
        getResidues in interface Sequence

      • setResidues

        public void setResidues​(org.intermine.objectstore.query.ClobAccess residues)
        Specified by:
        setResidues in interface Sequence

      • setLength

        public void setLength​(int length)
        Specified by:
        setLength in interface Sequence

      • getId

        public java.lang.Integer getId()
        Specified by:
        getId in interface org.intermine.model.InterMineFastPathObject
        Specified by:
        getId in interface org.intermine.model.InterMineObject

      • setId

        public void setId​(java.lang.Integer id)
        Specified by:
        setId in interface org.intermine.model.InterMineFastPathObject
        Specified by:
        setId in interface org.intermine.model.InterMineObject

      • equals

        public boolean equals​(java.lang.Object o)
        Overrides:
        equals in class java.lang.Object

      • hashCode

        public int hashCode()
        Overrides:
        hashCode in class java.lang.Object

      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object

      • getFieldValue

        public java.lang.Object getFieldValue​(java.lang.String fieldName)
                               throws java.lang.IllegalAccessException
        Specified by:
        getFieldValue in interface org.intermine.model.FastPathObject
        Throws:
        java.lang.IllegalAccessException

      • getFieldProxy

        public java.lang.Object getFieldProxy​(java.lang.String fieldName)
                               throws java.lang.IllegalAccessException
        Specified by:
        getFieldProxy in interface org.intermine.model.FastPathObject
        Throws:
        java.lang.IllegalAccessException

      • setFieldValue

        public void setFieldValue​(java.lang.String fieldName,
                          java.lang.Object value)
        Specified by:
        setFieldValue in interface org.intermine.model.FastPathObject

      • getFieldType

        public java.lang.Class<?> getFieldType​(java.lang.String fieldName)
        Specified by:
        getFieldType in interface org.intermine.model.FastPathObject

      • getoBJECT

        public org.intermine.model.StringConstructor getoBJECT()
        Specified by:
        getoBJECT in interface org.intermine.model.InterMineFastPathObject
        Specified by:
        getoBJECT in interface org.intermine.model.InterMineObject

      • setoBJECT

        public void setoBJECT​(java.lang.String notXml,
                      org.intermine.objectstore.ObjectStore os)
        Specified by:
        setoBJECT in interface org.intermine.model.InterMineObject

      • setoBJECT

        public void setoBJECT​(java.lang.String[] notXml,
                      org.intermine.objectstore.ObjectStore os)
        Specified by:
        setoBJECT in interface org.intermine.model.InterMineObject

      • addCollectionElement

        public void addCollectionElement​(java.lang.String fieldName,
                                 org.intermine.model.InterMineObject element)

      • getElementType

        public java.lang.Class<?> getElementType​(java.lang.String fieldName)
        Specified by:
        getElementType in interface org.intermine.model.InterMineFastPathObject
        Specified by:
        getElementType in interface org.intermine.model.InterMineObject