Package org.intermine.model.bio

Interface BioEntity

All Superinterfaces:

Annotatable, org.intermine.model.FastPathObject, org.intermine.model.InterMineFastPathObject, org.intermine.model.InterMineObject

All Known Subinterfaces:

CDS, Chromosome, Exon, Gene, GeneFlankingRegion, IntergenicRegion, Intron, Protein, SequenceCollection, SequenceFeature, Strain, SyntenicRegion, Transcript, UTR

All Known Implementing Classes:

BioEntityShadow, CDSShadow, ChromosomeShadow, ExonShadow, GeneFlankingRegionShadow, GeneShadow, IntergenicRegionShadow, IntronShadow, ProteinShadow, SequenceCollectionShadow, SequenceFeatureShadow, StrainShadow, SyntenicRegionShadow, TranscriptShadow, UTRShadow

public interface BioEntity
extends Annotatable

Method Summary

Modifier and Type	Method	Description
void	addCrossReferences(CrossReference arg)
void	addDataSets(DataSet arg)
void	addLocatedFeatures(Location arg)
void	addLocations(Location arg)
void	addSynonyms(Synonym arg)
java.util.Set<CrossReference>	getCrossReferences()
java.util.Set<DataSet>	getDataSets()
java.util.Set<Location>	getLocatedFeatures()
java.util.Set<Location>	getLocations()
java.lang.String	getName()
Organism	getOrganism()
java.lang.String	getSecondaryIdentifier()
java.lang.String	getSymbol()
java.util.Set<Synonym>	getSynonyms()
org.intermine.model.InterMineObject	proxGetOrganism()
void	proxyOrganism(org.intermine.objectstore.proxy.ProxyReference organism)
void	setCrossReferences(java.util.Set<CrossReference> crossReferences)
void	setDataSets(java.util.Set<DataSet> dataSets)
void	setLocatedFeatures(java.util.Set<Location> locatedFeatures)
void	setLocations(java.util.Set<Location> locations)
void	setName(java.lang.String name)
void	setOrganism(Organism organism)
void	setSecondaryIdentifier(java.lang.String secondaryIdentifier)
void	setSymbol(java.lang.String symbol)
void	setSynonyms(java.util.Set<Synonym> synonyms)

Methods inherited from interface org.intermine.model.bio.Annotatable

addOntologyAnnotations, addPublications, getOntologyAnnotations, getPrimaryIdentifier, getPublications, setOntologyAnnotations, setPrimaryIdentifier, setPublications

Methods inherited from interface org.intermine.model.FastPathObject

getFieldProxy, getFieldType, getFieldValue, setFieldValue

Methods inherited from interface org.intermine.model.InterMineObject

getElementType, getId, getoBJECT, setId, setoBJECT, setoBJECT

Method Detail

getSymbol

java.lang.String getSymbol()

setSymbol

void setSymbol(java.lang.String symbol)

getName

java.lang.String getName()

setName

void setName(java.lang.String name)

getSecondaryIdentifier

java.lang.String getSecondaryIdentifier()

setSecondaryIdentifier

void setSecondaryIdentifier(java.lang.String secondaryIdentifier)

getOrganism

Organism getOrganism()

setOrganism

void setOrganism(Organism organism)

proxyOrganism

void proxyOrganism(org.intermine.objectstore.proxy.ProxyReference organism)

proxGetOrganism

org.intermine.model.InterMineObject proxGetOrganism()

getLocatedFeatures

java.util.Set<Location> getLocatedFeatures()

setLocatedFeatures

void setLocatedFeatures(java.util.Set<Location> locatedFeatures)

addLocatedFeatures

void addLocatedFeatures(Location arg)

getLocations

java.util.Set<Location> getLocations()

setLocations

void setLocations(java.util.Set<Location> locations)

addLocations

void addLocations(Location arg)

getSynonyms

java.util.Set<Synonym> getSynonyms()

setSynonyms

void setSynonyms(java.util.Set<Synonym> synonyms)

addSynonyms

void addSynonyms(Synonym arg)

getDataSets

java.util.Set<DataSet> getDataSets()

setDataSets

void setDataSets(java.util.Set<DataSet> dataSets)

addDataSets

void addDataSets(DataSet arg)

getCrossReferences

java.util.Set<CrossReference> getCrossReferences()

setCrossReferences

void setCrossReferences(java.util.Set<CrossReference> crossReferences)

addCrossReferences

void addCrossReferences(CrossReference arg)