Package org.intermine.model.bio

Class BioEntityShadow

java.lang.Object

org.intermine.model.bio.BioEntityShadow

All Implemented Interfaces:

Annotatable, BioEntity, org.intermine.model.FastPathObject, org.intermine.model.InterMineFastPathObject, org.intermine.model.InterMineObject, org.intermine.model.ShadowClass

public class BioEntityShadow
extends java.lang.Object
implements BioEntity, org.intermine.model.ShadowClass

Field Summary

Fields

Modifier and Type	Field	Description
protected java.util.Set<CrossReference>	crossReferences
protected java.util.Set<DataSet>	dataSets
protected java.lang.Integer	id
protected java.util.Set<Location>	locatedFeatures
protected java.util.Set<Location>	locations
protected java.lang.String	name
protected java.util.Set<OntologyAnnotation>	ontologyAnnotations
protected org.intermine.model.InterMineObject	organism
protected java.lang.String	primaryIdentifier
protected java.util.Set<Publication>	publications
protected java.lang.String	secondaryIdentifier
static java.lang.Class<BioEntity>	shadowOf
protected java.lang.String	symbol
protected java.util.Set<Synonym>	synonyms

Constructor Summary

Constructors

Constructor	Description
BioEntityShadow()

Method Summary

Modifier and Type	Method	Description
void	addCollectionElement(java.lang.String fieldName, org.intermine.model.InterMineObject element)
void	addCrossReferences(CrossReference arg)
void	addDataSets(DataSet arg)
void	addLocatedFeatures(Location arg)
void	addLocations(Location arg)
void	addOntologyAnnotations(OntologyAnnotation arg)
void	addPublications(Publication arg)
void	addSynonyms(Synonym arg)
boolean	equals(java.lang.Object o)
java.util.Set<CrossReference>	getCrossReferences()
java.util.Set<DataSet>	getDataSets()
java.lang.Class<?>	getElementType(java.lang.String fieldName)
java.lang.Object	getFieldProxy(java.lang.String fieldName)
java.lang.Class<?>	getFieldType(java.lang.String fieldName)
java.lang.Object	getFieldValue(java.lang.String fieldName)
java.lang.Integer	getId()
java.util.Set<Location>	getLocatedFeatures()
java.util.Set<Location>	getLocations()
java.lang.String	getName()
org.intermine.model.StringConstructor	getoBJECT()
java.util.Set<OntologyAnnotation>	getOntologyAnnotations()
Organism	getOrganism()
java.lang.String	getPrimaryIdentifier()
java.util.Set<Publication>	getPublications()
java.lang.String	getSecondaryIdentifier()
java.lang.String	getSymbol()
java.util.Set<Synonym>	getSynonyms()
int	hashCode()
org.intermine.model.InterMineObject	proxGetOrganism()
void	proxyOrganism(org.intermine.objectstore.proxy.ProxyReference organism)
void	setCrossReferences(java.util.Set<CrossReference> crossReferences)
void	setDataSets(java.util.Set<DataSet> dataSets)
void	setFieldValue(java.lang.String fieldName, java.lang.Object value)
void	setId(java.lang.Integer id)
void	setLocatedFeatures(java.util.Set<Location> locatedFeatures)
void	setLocations(java.util.Set<Location> locations)
void	setName(java.lang.String name)
void	setoBJECT(java.lang.String[] notXml, org.intermine.objectstore.ObjectStore os)
void	setoBJECT(java.lang.String notXml, org.intermine.objectstore.ObjectStore os)
void	setOntologyAnnotations(java.util.Set<OntologyAnnotation> ontologyAnnotations)
void	setOrganism(Organism organism)
void	setPrimaryIdentifier(java.lang.String primaryIdentifier)
void	setPublications(java.util.Set<Publication> publications)
void	setSecondaryIdentifier(java.lang.String secondaryIdentifier)
void	setSymbol(java.lang.String symbol)
void	setSynonyms(java.util.Set<Synonym> synonyms)
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

shadowOf

public static final java.lang.Class<BioEntity> shadowOf

symbol

protected java.lang.String symbol

name

protected java.lang.String name

secondaryIdentifier

protected java.lang.String secondaryIdentifier

organism

protected org.intermine.model.InterMineObject organism

locatedFeatures

protected java.util.Set<Location> locatedFeatures

locations

protected java.util.Set<Location> locations

synonyms

protected java.util.Set<Synonym> synonyms

dataSets

protected java.util.Set<DataSet> dataSets

crossReferences

protected java.util.Set<CrossReference> crossReferences

primaryIdentifier

protected java.lang.String primaryIdentifier

ontologyAnnotations

protected java.util.Set<OntologyAnnotation> ontologyAnnotations

publications

protected java.util.Set<Publication> publications

id

protected java.lang.Integer id

Constructor Detail

BioEntityShadow

public BioEntityShadow()

Method Detail

getSymbol

public java.lang.String getSymbol()

Specified by:

getSymbol in interface BioEntity

setSymbol

public void setSymbol(java.lang.String symbol)

Specified by:

setSymbol in interface BioEntity

getName

public java.lang.String getName()

Specified by:

getName in interface BioEntity

setName

public void setName(java.lang.String name)

Specified by:

setName in interface BioEntity

getSecondaryIdentifier

public java.lang.String getSecondaryIdentifier()

Specified by:

getSecondaryIdentifier in interface BioEntity

setSecondaryIdentifier

public void setSecondaryIdentifier(java.lang.String secondaryIdentifier)

Specified by:

setSecondaryIdentifier in interface BioEntity

getOrganism

public Organism getOrganism()

Specified by:

getOrganism in interface BioEntity

setOrganism

public void setOrganism(Organism organism)

Specified by:

setOrganism in interface BioEntity

proxyOrganism

public void proxyOrganism(org.intermine.objectstore.proxy.ProxyReference organism)

Specified by:

proxyOrganism in interface BioEntity

proxGetOrganism

public org.intermine.model.InterMineObject proxGetOrganism()

Specified by:

proxGetOrganism in interface BioEntity

getLocatedFeatures

public java.util.Set<Location> getLocatedFeatures()

Specified by:

getLocatedFeatures in interface BioEntity

setLocatedFeatures

public void setLocatedFeatures(java.util.Set<Location> locatedFeatures)

Specified by:

setLocatedFeatures in interface BioEntity

addLocatedFeatures

public void addLocatedFeatures(Location arg)

Specified by:

addLocatedFeatures in interface BioEntity

getLocations

public java.util.Set<Location> getLocations()

Specified by:

getLocations in interface BioEntity

setLocations

public void setLocations(java.util.Set<Location> locations)

Specified by:

setLocations in interface BioEntity

addLocations

public void addLocations(Location arg)

Specified by:

addLocations in interface BioEntity

getSynonyms

public java.util.Set<Synonym> getSynonyms()

Specified by:

getSynonyms in interface BioEntity

setSynonyms

public void setSynonyms(java.util.Set<Synonym> synonyms)

Specified by:

setSynonyms in interface BioEntity

addSynonyms

public void addSynonyms(Synonym arg)

Specified by:

addSynonyms in interface BioEntity

getDataSets

public java.util.Set<DataSet> getDataSets()

Specified by:

getDataSets in interface BioEntity

setDataSets

public void setDataSets(java.util.Set<DataSet> dataSets)

Specified by:

setDataSets in interface BioEntity

addDataSets

public void addDataSets(DataSet arg)

Specified by:

addDataSets in interface BioEntity

getCrossReferences

public java.util.Set<CrossReference> getCrossReferences()

Specified by:

getCrossReferences in interface BioEntity

setCrossReferences

public void setCrossReferences(java.util.Set<CrossReference> crossReferences)

Specified by:

setCrossReferences in interface BioEntity

addCrossReferences

public void addCrossReferences(CrossReference arg)

Specified by:

addCrossReferences in interface BioEntity

getPrimaryIdentifier

public java.lang.String getPrimaryIdentifier()

Specified by:

getPrimaryIdentifier in interface Annotatable

setPrimaryIdentifier

public void setPrimaryIdentifier(java.lang.String primaryIdentifier)

Specified by:

setPrimaryIdentifier in interface Annotatable

getOntologyAnnotations

public java.util.Set<OntologyAnnotation> getOntologyAnnotations()

Specified by:

getOntologyAnnotations in interface Annotatable

setOntologyAnnotations

public void setOntologyAnnotations(java.util.Set<OntologyAnnotation> ontologyAnnotations)

Specified by:

setOntologyAnnotations in interface Annotatable

addOntologyAnnotations

public void addOntologyAnnotations(OntologyAnnotation arg)

Specified by:

addOntologyAnnotations in interface Annotatable

getPublications

public java.util.Set<Publication> getPublications()

Specified by:

getPublications in interface Annotatable

setPublications

public void setPublications(java.util.Set<Publication> publications)

Specified by:

setPublications in interface Annotatable

addPublications

public void addPublications(Publication arg)

Specified by:

addPublications in interface Annotatable

getId

public java.lang.Integer getId()

Specified by:

getId in interface org.intermine.model.InterMineFastPathObject

Specified by:

getId in interface org.intermine.model.InterMineObject

setId

public void setId(java.lang.Integer id)

Specified by:

setId in interface org.intermine.model.InterMineFastPathObject

Specified by:

setId in interface org.intermine.model.InterMineObject

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

getFieldValue

public java.lang.Object getFieldValue(java.lang.String fieldName)
                               throws java.lang.IllegalAccessException

Specified by:

getFieldValue in interface org.intermine.model.FastPathObject

Throws:

java.lang.IllegalAccessException

getFieldProxy

public java.lang.Object getFieldProxy(java.lang.String fieldName)
                               throws java.lang.IllegalAccessException

Specified by:

getFieldProxy in interface org.intermine.model.FastPathObject

Throws:

java.lang.IllegalAccessException

setFieldValue

public void setFieldValue(java.lang.String fieldName,
                          java.lang.Object value)

Specified by:

setFieldValue in interface org.intermine.model.FastPathObject

getFieldType

public java.lang.Class<?> getFieldType(java.lang.String fieldName)

Specified by:

getFieldType in interface org.intermine.model.FastPathObject

getoBJECT

public org.intermine.model.StringConstructor getoBJECT()

Specified by:

getoBJECT in interface org.intermine.model.InterMineFastPathObject

Specified by:

getoBJECT in interface org.intermine.model.InterMineObject

setoBJECT

public void setoBJECT(java.lang.String notXml,
                      org.intermine.objectstore.ObjectStore os)

Specified by:

setoBJECT in interface org.intermine.model.InterMineObject

setoBJECT

public void setoBJECT(java.lang.String[] notXml,
                      org.intermine.objectstore.ObjectStore os)

Specified by:

setoBJECT in interface org.intermine.model.InterMineObject

addCollectionElement

public void addCollectionElement(java.lang.String fieldName,
                                 org.intermine.model.InterMineObject element)

getElementType

public java.lang.Class<?> getElementType(java.lang.String fieldName)

Specified by:

getElementType in interface org.intermine.model.InterMineFastPathObject

Specified by:

getElementType in interface org.intermine.model.InterMineObject