Package org.intermine.bio.dataconversion

Class MalariaGFF3RecordHandler

  • public class MalariaGFF3RecordHandler
extends org.intermine.bio.dataconversion.GFF3RecordHandler
    Handle special cases when converting malaria GFF3 files.

    • Field Summary

      • Fields inherited from class org.intermine.bio.dataconversion.GFF3RecordHandler

        converter, earlyItems, items, parents, refsAndCollections, synonyms, tgtSequence

    • Constructor Summary

      Constructors 
      Constructor Description
      MalariaGFF3RecordHandler​(org.intermine.metadata.Model tgtModel)
      Create a new MalariaGFF3RecordHandler object.

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void process​(org.intermine.bio.io.gff3.GFF3Record record)

      • Methods inherited from class org.intermine.bio.dataconversion.GFF3RecordHandler

        addDataSet, addEarlyItem, addItem, addParent, addPublication, addSynonym, addSynonyms, clear, clearDataSetReferenceList, clearFinalItems, clearLocation, clearPublicationReferenceList, createLocations, getDataSetReferenceList, getFeature, getFinalItems, getItems, getLocation, getOrganism, getPublicationReferenceList, getRefsAndCollections, getSequence, getSynonyms, getTargetModel, getTgtLocation, getTgtOrganism, getTgtSequence, removeFeature, setConverter, setFeature, setIdentifierMap, setLocation, setOrganism, setSequence, setTgtLocation, setTgtOrganism, setTgtSequence

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • MalariaGFF3RecordHandler

        public MalariaGFF3RecordHandler​(org.intermine.metadata.Model tgtModel)
        Create a new MalariaGFF3RecordHandler object.
        Parameters:
        tgtModel - the target Model

    • Method Detail

      • process

        public void process​(org.intermine.bio.io.gff3.GFF3Record record)
        Overrides:
        process in class org.intermine.bio.dataconversion.GFF3RecordHandler