Package org.intermine.bio.web.export

Class GenomicRegionSequenceExporter

  • public class GenomicRegionSequenceExporter
extends java.lang.Object
    Exports DNA sequences of given genomic regions in FASTA format.

    • Constructor Summary

      Constructors 
      Constructor Description
      GenomicRegionSequenceExporter​(org.intermine.objectstore.ObjectStore os, java.io.OutputStream out)
      Instructor

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void export​(java.util.List<GenomicRegion> grList)
      DO export

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • GenomicRegionSequenceExporter

        public GenomicRegionSequenceExporter​(org.intermine.objectstore.ObjectStore os,
                                     java.io.OutputStream out)
        Instructor
        Parameters:
        os - ObjectStore
        out - output stream

    • Method Detail

      • export

        public void export​(java.util.List<GenomicRegion> grList)
            throws java.lang.Exception
        DO export
        Parameters:
        grList - a list of GenomicRegion objects
        Throws:
        java.lang.Exception - ex