Package org.intermine.bio.webservice

Class GFFQueryService

    • Field Summary

      • Fields inherited from class org.intermine.webservice.server.WebService

        dataPackageOutput, DEFAULT_CALLBACK, im, out, output, request, response, webProperties

    • Constructor Summary

      Constructors 
      Constructor Description
      GFFQueryService​(org.intermine.api.InterMineAPI im)
      Constructor.

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      protected void checkPathQuery​(org.intermine.pathquery.PathQuery pq)
      No-op stub.
      protected java.lang.String getContentType()  
      protected GFF3Exporter getExporter​(org.intermine.pathquery.PathQuery pq)  
      protected java.lang.String getSuffix()  

      • Methods inherited from class org.intermine.webservice.server.query.AbstractQueryService

        formatIsJsonObj, getQueryBuilder, getSchemaLocation, getSchemaUrl

      • Methods inherited from class org.intermine.webservice.server.WebService

        canServe, cleanUp, formatIsFlatFile, formatIsJSON, formatIsJSONP, formatIsXML, getAuthenticatedUser, getCallback, getColumnHeaderStyle, getDefaultOutput, getExtension, getFormat, getIntParameter, getIntParameter, getLineBreak, getListManager, getOptionalParameter, getOptionalParameter, getPermission, getProperty, getRawOutput, getRequestFileName, getRequiredParameter, hasCallback, initState, isAuthenticated, isGzip, isUncompressed, isZip, makeJSONOutput, makeXMLOutput, postInit, service, setFormat, setNameSpace, validateState, wantsColumnHeaders, wantsDataPackage

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • GFFQueryService

        public GFFQueryService​(org.intermine.api.InterMineAPI im)
        Constructor.
        Parameters:
        im - A reference to an InterMine API settings bundle.

    • Method Detail

      • getExporter

        protected GFF3Exporter getExporter​(org.intermine.pathquery.PathQuery pq)
        Specified by:
        getExporter in class BioQueryService
        Parameters:
        pq - pathquery
        Returns:
        the exporter

      • checkPathQuery

        protected void checkPathQuery​(org.intermine.pathquery.PathQuery pq)
                       throws java.lang.Exception
        Description copied from class: BioQueryService
        No-op stub. Put query validation here.
        Overrides:
        checkPathQuery in class BioQueryService
        Parameters:
        pq - pathquery
        Throws:
        java.lang.Exception - if something goes wrong