Package org.intermine.bio.web.displayer

Class GeneOntologyDisplayer

  • public class GeneOntologyDisplayer
extends org.intermine.web.displayer.ReportDisplayer
    Builds datastructure from go parent id to go term id. Includes evidence codes.

    • Field Summary

      Fields 
      Modifier and Type Field Description
      static java.util.Set<java.lang.String> ONTOLOGIES
      The names of ontology root terms.

      • Fields inherited from class org.intermine.web.displayer.ReportDisplayer

        config, im

    • Constructor Summary

      Constructors 
      Constructor Description
      GeneOntologyDisplayer​(org.intermine.web.logic.config.ReportDisplayerConfig config, org.intermine.api.InterMineAPI im)
      Construct with config and the InterMineAPI.

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void display​(javax.servlet.http.HttpServletRequest request, org.intermine.web.logic.results.ReportObject reportObject)  

      • Methods inherited from class org.intermine.web.displayer.ReportDisplayer

        execute, getDisplayerName, getJspPage, getNicerDisplayerName, getReplacedFieldExprs, getShowImmediately

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Field Detail

      • ONTOLOGIES

        public static final java.util.Set<java.lang.String> ONTOLOGIES
        The names of ontology root terms.

    • Constructor Detail

      • GeneOntologyDisplayer

        public GeneOntologyDisplayer​(org.intermine.web.logic.config.ReportDisplayerConfig config,
                             org.intermine.api.InterMineAPI im)
        Construct with config and the InterMineAPI.
        Parameters:
        config - to describe the report displayer
        im - the InterMine API

    • Method Detail

      • display

        public void display​(javax.servlet.http.HttpServletRequest request,
                    org.intermine.web.logic.results.ReportObject reportObject)
        Specified by:
        display in class org.intermine.web.displayer.ReportDisplayer