Package org.intermine.bio.web.logic

Class OrganismGenomeBuildLookup

java.lang.Object

org.intermine.bio.web.logic.OrganismGenomeBuildLookup

public final class OrganismGenomeBuildLookup
extends java.lang.Object

An util class to help looking up genome build by a given organism id.

Method Summary

Modifier and Type	Method	Description
static java.lang.String	getGenomeBuildbyOrgansimAbbreviation(java.lang.String abbr)	Get genome build by organism short name such as "D.
static java.util.Collection<java.lang.String>	getGenomeBuildByOrgansimCollection(java.util.Collection<java.lang.String> c)	Get genome build by a collection of ids
static java.lang.String	getGenomeBuildbyOrgansimFullName(java.lang.String fn)	Get genome build by organism full name such as "Drosophila melanogaster"
static java.lang.String	getGenomeBuildbyOrgansimId(java.lang.String id)	Get genome build by any id
static java.lang.String	getGenomeBuildbyOrgansimTaxon(java.lang.Integer taxon)	Get genome build by organism taxon such as 7227

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

getGenomeBuildbyOrgansimFullName

public static java.lang.String getGenomeBuildbyOrgansimFullName(java.lang.String fn)

Get genome build by organism full name such as "Drosophila melanogaster"

Parameters:

fn - full name of an organism

Returns:

genome build

getGenomeBuildbyOrgansimAbbreviation

public static java.lang.String getGenomeBuildbyOrgansimAbbreviation(java.lang.String abbr)

Get genome build by organism short name such as "D. melanogaster"

Parameters:

abbr - short name of an organism

Returns:

genome build

getGenomeBuildbyOrgansimTaxon

public static java.lang.String getGenomeBuildbyOrgansimTaxon(java.lang.Integer taxon)

Get genome build by organism taxon such as 7227

Parameters:

taxon - taxon of an organism

Returns:

genome build

getGenomeBuildbyOrgansimId

public static java.lang.String getGenomeBuildbyOrgansimId(java.lang.String id)

Get genome build by any id

Parameters:

id - id of an organism

Returns:

genome build

getGenomeBuildByOrgansimCollection

public static java.util.Collection<java.lang.String> getGenomeBuildByOrgansimCollection(java.util.Collection<java.lang.String> c)

Get genome build by a collection of ids

Parameters:

c - a collection of organism ids

Returns:

a collection genome builds