Package org.intermine.bio.web.model

Class GeneExpressionAtlasDiseasesExpressions

java.lang.Object

org.intermine.bio.web.model.GeneExpressionAtlasDiseasesExpressions

public class GeneExpressionAtlasDiseasesExpressions
extends java.lang.Object

Gene Expression Atlas Tissues Expressions

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
class	GeneExpressionAtlasDiseasesExpressions.ByPValueComparator	Sort by p-value inversely
class	GeneExpressionAtlasDiseasesExpressions.ByTStatisticComparator	Sort by t-statistic
class	GeneExpressionAtlasDiseasesExpressions.CaseInsensitiveComparator	Comparator used on "conditions" to sort them (their keys) case insensitively
class	GeneExpressionAtlasDiseasesExpressions.ExpressionList	Represents a list of expressions (taken from multiple probe sets) for a given tissue type

Constructor Summary

Constructors

Constructor	Description
GeneExpressionAtlasDiseasesExpressions(org.intermine.api.results.ExportResultsIterator values)	Convert Path results into a List (ProteinAtlasDisplayer.java)

Method Summary

Modifier and Type	Method	Description
java.util.Map<java.lang.String,GeneExpressionAtlasDiseasesExpressions.ExpressionList>	getByName()
java.util.Map<java.lang.String,GeneExpressionAtlasDiseasesExpressions.ExpressionList>	getByPValue()
java.util.Map<java.lang.String,GeneExpressionAtlasDiseasesExpressions.ExpressionList>	getByTStatistic()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GeneExpressionAtlasDiseasesExpressions

public GeneExpressionAtlasDiseasesExpressions(org.intermine.api.results.ExportResultsIterator values)

Convert Path results into a List (ProteinAtlasDisplayer.java)

Parameters:

values - values

Method Detail

getByName

public java.util.Map<java.lang.String,GeneExpressionAtlasDiseasesExpressions.ExpressionList> getByName()

Returns:

sorted by tissue name

getByTStatistic

public java.util.Map<java.lang.String,GeneExpressionAtlasDiseasesExpressions.ExpressionList> getByTStatistic()

Returns:

the map of lists sorted by highest t-statistic of a cell type expression

getByPValue

public java.util.Map<java.lang.String,GeneExpressionAtlasDiseasesExpressions.ExpressionList> getByPValue()

Returns:

the map of lists sorted by lowest p-value of a cell type expression