Package org.intermine.bio.webservice

Class FastaListService

java.lang.Object

org.intermine.webservice.server.WebService

org.intermine.webservice.server.query.AbstractQueryService

org.intermine.bio.webservice.BioQueryService

org.intermine.bio.webservice.FastaQueryService

org.intermine.bio.webservice.FastaListService

public class FastaListService
extends FastaQueryService

Export a list as FASTA.

Field Summary

Fields inherited from class org.intermine.webservice.server.WebService

dataPackageOutput, DEFAULT_CALLBACK, im, out, output, request, response, webProperties

Constructor Summary

Constructors

Constructor	Description
FastaListService(org.intermine.api.InterMineAPI im)

Method Summary

Modifier and Type	Method	Description
protected org.intermine.pathquery.PathQuery	getQuery()	Make the path-query to run, and check it has the right number of columns.

Methods inherited from class org.intermine.bio.webservice.FastaQueryService

checkPathQuery, getContentType, getExporter, getSuffix, parseExtension

Methods inherited from class org.intermine.bio.webservice.BioQueryService

execute, getDefaultFileName, getDefaultFormat, getDefaultOutput, getOutputStream, getPathQueryViews, getPrintWriter, getQueryPaths

Methods inherited from class org.intermine.webservice.server.query.AbstractQueryService

formatIsJsonObj, getQueryBuilder, getSchemaLocation, getSchemaUrl

Methods inherited from class org.intermine.webservice.server.WebService

canServe, cleanUp, formatIsFlatFile, formatIsJSON, formatIsJSONP, formatIsXML, getAuthenticatedUser, getCallback, getColumnHeaderStyle, getDefaultOutput, getExtension, getFormat, getIntParameter, getIntParameter, getLineBreak, getListManager, getOptionalParameter, getOptionalParameter, getPermission, getProperty, getRawOutput, getRequestFileName, getRequiredParameter, hasCallback, initState, isAuthenticated, isGzip, isUncompressed, isZip, makeJSONOutput, makeXMLOutput, postInit, service, setFormat, setNameSpace, validateState, wantsColumnHeaders, wantsDataPackage

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FastaListService

public FastaListService(org.intermine.api.InterMineAPI im)

Parameters:

im - intermine API

Method Detail

getQuery

protected org.intermine.pathquery.PathQuery getQuery()

Description copied from class: FastaQueryService

Make the path-query to run, and check it has the right number of columns.

Overrides:

getQuery in class FastaQueryService

Returns:

A suitable pathquery for getting FASTA data from.