| ComplexDisplayer |
Displayer for gene/protein interactions using complex viewer
|
| CuratedProteinsDisplayer |
|
| CytoscapeNetworkDisplayer |
Displayer for gene/protein interactions using cytoscape plugin
|
| DiseaseDisplayer |
For ratmine, display all disease ontology objects for orthologues
|
| EsynDisplayer |
displayer for esyn
|
| FlyBaseExpressionDisplayer |
FlyBase modENCODE expression data
|
| FriendlyMineLinkGenerator |
Helper class for intermine links generated on report and lists pages
|
| GBrowseDisplayer |
Displayer for GBrowse
|
| GeneExpressionAtlasDiseasesDisplayer |
Gene Expression Atlas Displayer (Blue/Green)
|
| GeneExpressionAtlasTissuesDisplayer |
Gene Expression Atlas Displayer (Blue/Green)
|
| GeneIdentifiersDisplayer |
|
| GeneOntologyDisplayer |
Builds datastructure from go parent id to go term id.
|
| GeneStructureDisplayer |
Custom displayer for gene structure.
|
| HomologueDisplayer |
Displayer for Homology
|
| JBrowseDisplayer |
Displayer for JBrowse
|
| JMOLDisplayer |
displayer for protein structures.
|
| MetabolicGeneSummaryDisplayer |
|
| MinePathwaysDisplayer |
For all friendly mines, query for pathways
|
| MouseAllelesDisplayer |
If we are mouse, fetch results straight off of us, otherwise create a PathQuery from other
organisms.
|
| OverlappingFeaturesDisplayer |
Displayer for features overlapping a particular SequenceFeature using the overlappingFeatures
collection.
|
| PathwayDescriptionDisplayer |
|
| PathwaysDisplayer |
Display pathway for this gene, plus the count of the other genes on this pathway
|
| ProteinAtlasDisplayer |
Protein Atlas Tissue Expression Displayer, showing antibody staining per organ group etc.
|
| ProteinSequenceDisplayer |
Displayer for protein sequence
|
| ProteinStructureATMDisplayer |
Protein Structure ATM Displayer turning the field into a link that shows the shebang in new
window.
|
| PublicationAnnotationsDisplayer |
Display all objects mentioned by publication
|
| PublicationCountsDisplayer |
Display publication and number of genes annotated by that publication.
|
| RegulatoryRegionsDisplayer |
TODO: merge this with OverlappingFeaturesDisplayer to reuse common functionality (preferrably wo/
creating another table type on a report page
|
| ReportWidgetDisplayer |
|
| SequenceFeatureDisplayer |
Displayer for gene sequence feature
|
| SnpToGeneDisplayer |
SNPs to nearby Genes displayer for metabolicMine report page
|
| UniProtCommentsDisplayer |
metabolicMine UniProt curated comments displayer on Gene report page
|