Package org.intermine.bio.web.model

Class ProteinAtlasExpressions

java.lang.Object

org.intermine.bio.web.model.ProteinAtlasExpressions

public class ProteinAtlasExpressions
extends java.lang.Object

Protein Atlas Expressions

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
class	ProteinAtlasExpressions.ByCellCountComparator	Reorder a TreeMap based on the number of cells contained in Expressions
class	ProteinAtlasExpressions.ByLevelComparator	Comparator used on Expressions to order them by staining level
class	ProteinAtlasExpressions.ByOverallLevelComparator	Reorder a TreeMap based on the overall staining level of the Expressions
class	ProteinAtlasExpressions.ExpressionList	Represents a treemap structure of maps of expressions
class	ProteinAtlasExpressions.StainingLevelEvaluator	Determines the "points" staining levels will get

Constructor Summary

Constructors

Constructor	Description
ProteinAtlasExpressions(org.intermine.api.results.ExportResultsIterator values)	Convert Path results into a List (ProteinAtlasDisplayer.java)

Method Summary

Modifier and Type	Method	Description
java.util.Map<java.lang.String,ProteinAtlasExpressions.ExpressionList>	getByCells()
java.util.Map<java.lang.String,ProteinAtlasExpressions.ExpressionList>	getByLevel()
java.util.Map<java.lang.String,ProteinAtlasExpressions.ExpressionList>	getByOrgan()
java.lang.String	getReliability()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProteinAtlasExpressions

public ProteinAtlasExpressions(org.intermine.api.results.ExportResultsIterator values)

Convert Path results into a List (ProteinAtlasDisplayer.java)

Parameters:

values - values to export

Method Detail

getByOrgan

public java.util.Map<java.lang.String,ProteinAtlasExpressions.ExpressionList> getByOrgan()

Returns:

the map of lists sorted by Organ name

getByCells

public java.util.Map<java.lang.String,ProteinAtlasExpressions.ExpressionList> getByCells()

Returns:

the map of lists sorted by Cell types count

getByLevel

public java.util.Map<java.lang.String,ProteinAtlasExpressions.ExpressionList> getByLevel()

Returns:

the map of lists sorted by Overall level count

getReliability

public java.lang.String getReliability()

Returns:

the expressions reliability