Package org.intermine.bio.web.struts

Class BEDExportForm

  • All Implemented Interfaces:
    java.io.Serializable
    public class BEDExportForm
extends org.intermine.web.struts.TableExportForm
    Form for sequence export in BED format
    See Also:
    Serialized Form

    • Field Summary

      • Fields inherited from class org.apache.struts.action.ActionForm

        multipartRequestHandler, servlet

    • Constructor Summary

      Constructors 
      Constructor Description
      BEDExportForm()  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      boolean getMakeUcscCompatible()
      Return whether to make exported BED compatible with UCSC genome browser.
      java.lang.String getOrgansimString()  
      java.lang.String getTrackDescription()  
      java.lang.String getUcscCompatibleCheck()  
      void setMakeUcscCompatible​(boolean makeUcscCompatible)
      Set whether to make exported BED compatible with UCSC genome browser.
      void setOrgansimString​(java.lang.String organsimString)  
      void setTrackDescription​(java.lang.String trackDescription)  
      void setUcscCompatibleCheck​(java.lang.String ucscCompatibleCheck)  

      • Methods inherited from class org.intermine.web.struts.TableExportForm

        getDoGzip, getExtraParams, getIncludeHeaders, getPathsString, getTable, getType, initialise, reset, setDoGzip, setIncludeHeaders, setPathsString, setTable, setType

      • Methods inherited from class org.apache.struts.action.ActionForm

        getMultipartRequestHandler, getServlet, getServletWrapper, reset, setMultipartRequestHandler, setServlet, validate, validate

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • BEDExportForm

        public BEDExportForm()

    • Method Detail

      • getTrackDescription

        public java.lang.String getTrackDescription()
        Returns:
        the trackDescription

      • setTrackDescription

        public void setTrackDescription​(java.lang.String trackDescription)
        Parameters:
        trackDescription - the trackDescription to set

      • getMakeUcscCompatible

        public boolean getMakeUcscCompatible()
        Return whether to make exported BED compatible with UCSC genome browser.
        Returns:
        true if BED should be UCSC genome browser compatible

      • setMakeUcscCompatible

        public void setMakeUcscCompatible​(boolean makeUcscCompatible)
        Set whether to make exported BED compatible with UCSC genome browser.
        Parameters:
        makeUcscCompatible - true if BED should be UCSC genome browser compatible

      • getOrgansimString

        public java.lang.String getOrgansimString()
        Returns:
        the organsimString

      • setOrgansimString

        public void setOrgansimString​(java.lang.String organsimString)
        Parameters:
        organsimString - the organsimString to set

      • getUcscCompatibleCheck

        public java.lang.String getUcscCompatibleCheck()
        Returns:
        the ucscCompatibleCheck

      • setUcscCompatibleCheck

        public void setUcscCompatibleCheck​(java.lang.String ucscCompatibleCheck)
        Parameters:
        ucscCompatibleCheck - the ucscCompatibleCheck to set