Package org.intermine.bio.web.struts

Class GFF3ExportForm

  • All Implemented Interfaces:
    java.io.Serializable
    public class GFF3ExportForm
extends org.intermine.web.struts.TableExportForm
    Form for sequence export (FASTA probably)
    See Also:
    Serialized Form

    • Field Summary

      • Fields inherited from class org.apache.struts.action.ActionForm

        multipartRequestHandler, servlet

    • Constructor Summary

      Constructors 
      Constructor Description
      GFF3ExportForm()  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      java.util.Set<java.lang.String> getOrganisms()
      Get the organisms set
      boolean makeUcscCompatible()
      Return whether to make exported GFF3 compatible with UCSC genome browser.
      void setMakeUcscCompatible​(boolean makeUcscCompatible)
      Set whether to make exported GFF3 compatible with UCSC genome browser.
      void setOrganisms​(java.util.Set<java.lang.String> taxonIds)
      Set the organisms

      • Methods inherited from class org.intermine.web.struts.TableExportForm

        getDoGzip, getExtraParams, getIncludeHeaders, getPathsString, getTable, getType, initialise, reset, setDoGzip, setIncludeHeaders, setPathsString, setTable, setType

      • Methods inherited from class org.apache.struts.action.ActionForm

        getMultipartRequestHandler, getServlet, getServletWrapper, reset, setMultipartRequestHandler, setServlet, validate, validate

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • GFF3ExportForm

        public GFF3ExportForm()

    • Method Detail

      • makeUcscCompatible

        public boolean makeUcscCompatible()
        Return whether to make exported GFF3 compatible with UCSC genome browser.
        Returns:
        true if GFF3 should be UCSC genome browser compatible

      • setMakeUcscCompatible

        public void setMakeUcscCompatible​(boolean makeUcscCompatible)
        Set whether to make exported GFF3 compatible with UCSC genome browser.
        Parameters:
        makeUcscCompatible - true if GFF3 should be UCSC genome browser compatible

      • setOrganisms

        public void setOrganisms​(java.util.Set<java.lang.String> taxonIds)
        Set the organisms
        Parameters:
        taxonIds - set of taxon ids

      • getOrganisms

        public java.util.Set<java.lang.String> getOrganisms()
        Get the organisms set
        Returns:
        a set of taxon ids