Package org.intermine.bio.webservice

Class GFF3ListService

  • public class GFF3ListService
extends GFFQueryService
    Export a List as GFF3.

    • Field Summary

      • Fields inherited from class org.intermine.webservice.server.WebService

        dataPackageOutput, DEFAULT_CALLBACK, im, out, output, request, response, webProperties

    • Constructor Summary

      Constructors 
      Constructor Description
      GFF3ListService​(org.intermine.api.InterMineAPI im)  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      protected org.intermine.pathquery.PathQuery getQuery()
      Return the query specified in the request, shorn of all duplicate classes in the view.

      • Methods inherited from class org.intermine.webservice.server.query.AbstractQueryService

        formatIsJsonObj, formatIsNTriples, formatIsRDF, getQueryBuilder, getSchemaLocation, getSchemaUrl

      • Methods inherited from class org.intermine.webservice.server.WebService

        canServe, cleanUp, formatIsFlatFile, formatIsJSON, formatIsJSONP, formatIsXML, getAuthenticatedUser, getCallback, getColumnHeaderStyle, getDefaultOutput, getExtension, getFormat, getIntParameter, getIntParameter, getLineBreak, getListManager, getOptionalParameter, getOptionalParameter, getPermission, getProperty, getRawOutput, getRequestFileName, getRequiredParameter, hasCallback, initState, isAuthenticated, isGzip, isUncompressed, isZip, makeJSONOutput, makeXMLOutput, postInit, service, setFormat, setNameSpace, validateState, wantsColumnHeaders, wantsDataPackage

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • GFF3ListService

        public GFF3ListService​(org.intermine.api.InterMineAPI im)
        Parameters:
        im - intermine API

    • Method Detail

      • getQuery

        protected org.intermine.pathquery.PathQuery getQuery()
        Description copied from class: BioQueryService
        Return the query specified in the request, shorn of all duplicate classes in the view. Note, it is the users responsibility to ensure that there are only SequenceFeatures in the view.
        Overrides:
        getQuery in class BioQueryService
        Returns:
        A query.