Package org.intermine.bio.webservice

Class GFFQueryService

java.lang.Object

org.intermine.webservice.server.WebService

org.intermine.webservice.server.query.AbstractQueryService

org.intermine.bio.webservice.BioQueryService

org.intermine.bio.webservice.GFFQueryService

Direct Known Subclasses:

GFF3ListService

public class GFFQueryService
extends BioQueryService

A service for exporting query results as gff3.

Field Summary

Fields inherited from class org.intermine.webservice.server.WebService

dataPackageOutput, DEFAULT_CALLBACK, im, out, output, request, response, webProperties

Constructor Summary

Constructors

Constructor	Description
GFFQueryService(org.intermine.api.InterMineAPI im)	Constructor.

Method Summary

Modifier and Type	Method	Description
protected void	checkPathQuery(org.intermine.pathquery.PathQuery pq)	No-op stub.
protected java.lang.String	getContentType()
protected GFF3Exporter	getExporter(org.intermine.pathquery.PathQuery pq)
protected java.lang.String	getSuffix()

Methods inherited from class org.intermine.bio.webservice.BioQueryService

execute, getDefaultFileName, getDefaultFormat, getDefaultOutput, getOutputStream, getPathQueryViews, getPrintWriter, getQuery, getQueryPaths

Methods inherited from class org.intermine.webservice.server.query.AbstractQueryService

formatIsJsonObj, formatIsNTriples, formatIsRDF, getQueryBuilder, getSchemaLocation, getSchemaUrl

Methods inherited from class org.intermine.webservice.server.WebService

canServe, cleanUp, formatIsFlatFile, formatIsJSON, formatIsJSONP, formatIsXML, getAuthenticatedUser, getCallback, getColumnHeaderStyle, getDefaultOutput, getExtension, getFormat, getIntParameter, getIntParameter, getLineBreak, getListManager, getOptionalParameter, getOptionalParameter, getPermission, getProperty, getRawOutput, getRequestFileName, getRequiredParameter, hasCallback, initState, isAuthenticated, isGzip, isUncompressed, isZip, makeJSONOutput, makeXMLOutput, postInit, service, setFormat, setNameSpace, validateState, wantsColumnHeaders, wantsDataPackage

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GFFQueryService

public GFFQueryService(org.intermine.api.InterMineAPI im)

Constructor.

Parameters:

im - A reference to an InterMine API settings bundle.

Method Detail

getSuffix

protected java.lang.String getSuffix()

Specified by:

getSuffix in class BioQueryService

Returns:

suffix

getContentType

protected java.lang.String getContentType()

Specified by:

getContentType in class BioQueryService

Returns:

content type

getExporter

protected GFF3Exporter getExporter(org.intermine.pathquery.PathQuery pq)

Specified by:

getExporter in class BioQueryService

Parameters:

pq - pathquery

Returns:

the exporter

checkPathQuery

protected void checkPathQuery(org.intermine.pathquery.PathQuery pq)
                       throws java.lang.Exception

Description copied from class: BioQueryService

No-op stub. Put query validation here.

Overrides:

checkPathQuery in class BioQueryService

Parameters:

pq - pathquery

Throws:

java.lang.Exception - if something goes wrong